Wall clock time and date at job start Tue Mar 31 2020 11:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46970 * 270.00479 * 3 2 1 5 5 H 1.48503 * 109.46978 * 30.00136 * 3 2 1 6 6 H 1.48492 * 109.47388 * 150.00147 * 3 2 1 7 7 C 1.37877 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00297 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00162 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.42896 * 113.99874 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47248 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47459 * 64.99770 * 12 11 10 14 14 C 1.34703 * 117.00214 * 179.97438 * 13 12 11 15 15 O 1.21470 * 120.00277 * 0.02562 * 14 13 12 16 16 C 1.47742 * 119.99828 * 179.97438 * 14 13 12 17 17 C 1.39663 * 120.11447 * 0.02808 * 16 14 13 18 18 C 1.37976 * 119.99730 * 179.97438 * 17 16 14 19 19 C 1.38247 * 120.23288 * 359.74075 * 18 17 16 20 20 C 1.38990 * 120.23288 * 0.51565 * 19 18 17 21 21 N 1.39712 * 120.00147 * 179.76171 * 20 19 18 22 22 C 1.48229 * 111.00245 * 239.84622 * 21 20 19 23 23 C 1.51115 * 105.36076 * 215.10286 * 22 21 20 24 24 C 1.30967 * 109.45938 * 16.97986 * 23 22 21 25 25 C 1.48235 * 110.99683 * 126.21335 * 21 20 19 26 26 C 1.38664 * 119.99617 * 359.48724 * 20 19 18 27 27 H 0.97000 * 120.00325 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46701 * 59.99848 * 9 7 2 29 29 H 1.09008 * 109.46905 * 300.00405 * 9 7 2 30 30 H 1.08998 * 109.47480 * 59.99617 * 11 10 9 31 31 H 1.09008 * 109.46907 * 299.99864 * 11 10 9 32 32 H 1.09004 * 109.47276 * 304.99593 * 12 11 10 33 33 H 1.09008 * 109.47734 * 185.00003 * 12 11 10 34 34 H 1.07992 * 120.00442 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.87916 * 180.02562 * 18 17 16 36 36 H 1.08009 * 119.88624 * 180.25415 * 19 18 17 37 37 H 1.09001 * 110.26443 * 96.13254 * 22 21 20 38 38 H 1.08997 * 110.26495 * 334.07804 * 22 21 20 39 39 H 1.08000 * 125.26778 * 197.23471 * 23 22 21 40 40 H 1.07993 * 125.27082 * 179.97438 * 24 23 22 41 41 H 1.08994 * 110.26796 * 25.92505 * 25 21 20 42 42 H 1.09007 * 110.26569 * 263.86980 * 25 21 20 43 43 H 1.07996 * 120.11829 * 180.27350 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6482 -5.9561 -0.0017 13 8 3.3996 -5.8892 1.2390 14 6 4.3972 -6.7801 1.3986 15 8 4.6334 -7.5906 0.5252 16 6 5.2050 -6.7708 2.6357 17 6 4.9359 -5.8397 3.6413 18 6 5.6914 -5.8336 4.7958 19 6 6.7124 -6.7503 4.9645 20 6 6.9919 -7.6777 3.9677 21 7 8.0281 -8.5988 4.1411 22 6 9.0535 -8.4506 3.0811 23 6 9.5489 -9.8513 2.8048 24 6 8.6962 -10.7192 3.2895 25 6 7.5454 -9.9856 3.9385 26 6 6.2388 -7.6925 2.8035 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 0.9453 -4.9822 -0.8913 31 1 0.9448 -4.9827 0.8887 32 1 3.3217 -5.7952 -0.8436 33 1 2.1823 -6.9375 -0.0917 34 1 4.1365 -5.1246 3.5153 35 1 5.4814 -5.1130 5.5724 36 1 7.2976 -6.7431 5.8722 37 1 9.8724 -7.8231 3.4330 38 1 8.6086 -8.0233 2.1825 39 1 10.4662 -10.0983 2.2911 40 1 8.7993 -11.7927 3.2337 41 1 6.6759 -9.9905 3.2814 42 1 7.2983 -10.4431 4.8965 43 1 6.4514 -8.4151 2.0297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815214144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:08 Heat of formation + Delta-G solvation = -83.444824 kcal Electronic energy + Delta-G solvation = -25145.150274 eV Core-core repulsion = 21348.779020 eV Total energy + Delta-G solvation = -3796.371254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96961 -41.20210 -39.09841 -38.64811 -37.47858 -34.95898 -34.03950 -32.56988 -31.57217 -29.68707 -29.44585 -29.02382 -25.89136 -24.55687 -24.47854 -23.51195 -22.27123 -21.72651 -20.36006 -19.27740 -18.73498 -18.36691 -17.96629 -17.30906 -17.09522 -17.04279 -16.72968 -16.39337 -16.19935 -15.57700 -15.32595 -15.04092 -14.85182 -14.51769 -14.31479 -14.00160 -13.92020 -13.74462 -13.26220 -13.24058 -13.01445 -12.96256 -12.91793 -12.71584 -12.54206 -12.38537 -12.28619 -12.04241 -11.81962 -11.74850 -11.29515 -10.91021 -10.73250 -10.28783 -10.17789 -9.87015 -9.46907 -8.32998 -6.45087 -0.45315 0.09680 1.19877 1.35572 1.40163 1.42567 1.49244 1.54776 2.33871 2.58091 2.74150 3.00905 3.03033 3.44668 3.61229 3.74319 3.86554 3.87476 3.97479 4.05998 4.09870 4.22920 4.34871 4.41077 4.41885 4.48925 4.49879 4.53249 4.60332 4.66807 4.72448 4.84230 4.94108 5.13409 5.16123 5.17819 5.25553 5.32843 5.34198 5.39973 5.53441 5.59976 5.84569 5.94147 6.14450 6.47493 6.54639 6.78311 7.26381 8.79079 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.002371 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.452051 B =11805.020124 C =12514.942573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.078 3.922 13 O -0.349 6.349 14 C 0.506 3.494 15 O -0.538 6.538 16 C -0.133 4.133 17 C -0.066 4.066 18 C -0.114 4.114 19 C -0.049 4.049 20 C 0.057 3.943 21 N -0.468 5.468 22 C 0.046 3.954 23 C -0.171 4.171 24 C -0.170 4.170 25 C 0.045 3.955 26 C -0.090 4.090 27 H 0.271 0.729 28 H -0.008 1.008 29 H -0.009 1.009 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.962 -20.180 10.874 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.022 4.022 12 C 0.004 3.996 13 O -0.265 6.265 14 C 0.353 3.647 15 O -0.430 6.430 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.133 4.133 19 C -0.067 4.067 20 C -0.037 4.037 21 N -0.189 5.189 22 C -0.080 4.080 23 C -0.189 4.189 24 C -0.188 4.188 25 C -0.081 4.081 26 C -0.110 4.110 27 H 0.080 0.920 28 H 0.010 0.990 29 H 0.009 0.991 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.156 0.844 35 H 0.185 0.815 36 H 0.179 0.821 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.247 -20.163 11.152 28.194 hybrid contribution -0.825 0.522 -1.430 1.731 sum 15.423 -19.641 9.723 26.798 Atomic orbital electron populations 1.70054 1.07636 1.28691 1.50365 1.25935 0.95991 1.03292 0.93915 0.85201 0.78403 0.77118 0.78816 1.19383 1.19758 1.18950 1.21365 0.94023 0.90908 1.52401 0.92273 1.19879 0.88544 0.84317 0.93951 1.87865 1.35548 1.14171 1.95343 1.22639 0.94289 0.83244 1.02034 1.23264 0.93129 0.99454 0.83703 1.86626 1.43716 1.54152 1.41981 1.21625 0.78462 0.77439 0.87175 1.90773 1.68888 1.39215 1.44113 1.19023 0.99186 1.01876 0.93399 1.21744 0.98704 0.95571 0.92453 1.21487 0.94731 0.99466 0.97568 1.21569 0.95468 0.91314 0.98370 1.19035 0.94273 0.96975 0.93452 1.63435 1.08826 1.01992 1.44613 1.22326 0.95363 0.97691 0.92593 1.23760 1.00818 0.93491 1.00865 1.23766 0.95055 1.00781 0.99200 1.22357 0.96858 0.87347 1.01556 1.21678 0.93925 0.97237 0.98205 0.91981 0.99012 0.99111 0.89807 0.92300 0.90997 0.87223 0.84364 0.81501 0.82066 0.88260 0.92936 0.82354 0.82251 0.92616 0.88143 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 2 C 0.01 0.42 5.46 84.65 0.46 0.89 16 3 Si 0.98 44.25 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -32.80 9.43 25.60 0.24 -32.56 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.61 5.69 71.24 0.41 12.02 16 10 O -0.41 -20.14 10.30 -145.57 -1.50 -21.64 16 11 C 0.05 1.99 6.33 71.98 0.46 2.45 16 12 C 0.08 2.49 5.85 71.98 0.42 2.91 16 13 O -0.35 -12.08 9.44 -53.47 -0.50 -12.59 16 14 C 0.51 16.55 7.90 70.33 0.56 17.11 16 15 O -0.54 -19.22 16.13 19.93 0.32 -18.90 16 16 C -0.13 -3.63 5.87 -20.11 -0.12 -3.75 16 17 C -0.07 -1.57 9.61 22.55 0.22 -1.35 16 18 C -0.11 -1.97 10.02 22.21 0.22 -1.75 16 19 C -0.05 -0.81 9.96 22.45 0.22 -0.58 16 20 C 0.06 1.13 4.91 38.17 0.19 1.32 16 21 N -0.47 -8.34 5.58 -695.55 -3.88 -12.22 16 22 C 0.05 0.76 6.47 85.43 0.55 1.31 16 23 C -0.17 -2.24 10.95 25.81 0.28 -1.96 16 24 C -0.17 -2.18 10.95 25.81 0.28 -1.89 16 25 C 0.04 0.71 6.44 85.43 0.55 1.26 16 26 C -0.09 -2.17 7.23 22.68 0.16 -2.01 16 27 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 34 H 0.14 3.46 7.60 -2.91 -0.02 3.43 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.01 6.75 -2.39 -0.02 0.99 16 39 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.06 1.01 6.30 -2.39 -0.02 0.99 16 42 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.13 3.18 6.62 -2.91 -0.02 3.16 16 Total: -1.00 -72.04 369.41 2.86 -69.18 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.01 Total: 11.51 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.11 Total: -6.58 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -3.60 Total: -67.26 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -1.68 Total: -53.13 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -72.04 2.86 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815214144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.260 kcal (2) G-P(sol) polarization free energy of solvation -72.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds