Wall clock time and date at job start Tue Mar 31 2020 11:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00215 * 2 1 4 4 H 1.48502 * 109.47033 * 270.00214 * 3 2 1 5 5 H 1.48504 * 109.46838 * 29.99911 * 3 2 1 6 6 H 1.48497 * 109.46998 * 149.99878 * 3 2 1 7 7 C 1.37883 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99648 * 359.97438 * 7 2 1 10 10 O 1.42911 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.42894 * 113.99944 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46696 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.47141 * 65.00157 * 12 11 10 14 14 C 1.34767 * 117.00124 * 179.97438 * 13 12 11 15 15 O 1.21518 * 119.99684 * 359.97438 * 14 13 12 16 16 C 1.47378 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.39854 * 120.07346 * 179.97438 * 16 14 13 18 18 C 1.37111 * 119.92369 * 179.97438 * 17 16 14 19 19 C 1.39244 * 120.07492 * 359.97438 * 18 17 16 20 20 N 1.39011 * 119.92800 * 180.02562 * 19 18 17 21 21 C 1.48220 * 111.00307 * 126.53451 * 20 19 18 22 22 C 1.51116 * 105.44264 * 144.85418 * 21 20 19 23 23 C 1.31121 * 109.36918 * 343.13929 * 22 21 20 24 24 C 1.48231 * 110.99901 * 240.17566 * 20 19 18 25 25 C 1.39241 * 120.14676 * 0.29004 * 19 18 17 26 26 C 1.37107 * 120.07438 * 359.45182 * 25 19 18 27 27 H 0.97002 * 120.00036 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47500 * 60.00485 * 9 7 2 29 29 H 1.08996 * 109.47592 * 299.99543 * 9 7 2 30 30 H 1.08992 * 109.47149 * 60.00530 * 11 10 9 31 31 H 1.09002 * 109.47438 * 299.99893 * 11 10 9 32 32 H 1.08995 * 109.47522 * 305.00182 * 12 11 10 33 33 H 1.09007 * 109.47144 * 185.00023 * 12 11 10 34 34 H 1.07993 * 120.03932 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.96280 * 180.02562 * 18 17 16 36 36 H 1.09001 * 110.26818 * 263.87544 * 21 20 19 37 37 H 1.08998 * 110.26818 * 25.83173 * 21 20 19 38 38 H 1.07996 * 125.27389 * 163.07273 * 22 21 20 39 39 H 1.07996 * 125.24749 * 179.97438 * 23 22 21 40 40 H 1.08995 * 110.26757 * 334.07016 * 24 20 19 41 41 H 1.08997 * 110.26330 * 96.03674 * 24 20 19 42 42 H 1.07996 * 119.95891 * 179.70668 * 25 19 18 43 43 H 1.07996 * 120.04052 * 180.29787 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5854 0.0015 11 6 1.5650 -4.8754 0.0019 12 6 2.6480 -5.9562 0.0023 13 8 3.3992 -5.8882 1.2429 14 6 4.3973 -6.7794 1.4035 15 8 4.6329 -7.5914 0.5307 16 6 5.2030 -6.7692 2.6375 17 6 6.2387 -7.6938 2.8059 18 6 6.9867 -7.6812 3.9550 19 6 6.7164 -6.7490 4.9534 20 7 7.4770 -6.7386 6.1169 21 6 8.0357 -5.3901 6.3744 22 6 8.0302 -5.2325 7.8773 23 6 7.2345 -6.1307 8.4058 24 6 6.6278 -6.9745 7.3087 25 6 5.6823 -5.8307 4.7912 26 6 4.9340 -5.8343 3.6424 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8919 30 1 0.9446 -4.9826 -0.8877 31 1 0.9452 -4.9824 0.8922 32 1 3.3215 -5.7960 -0.8395 33 1 2.1820 -6.9376 -0.0869 34 1 6.4497 -8.4162 2.0314 35 1 7.7869 -8.3946 4.0855 36 1 9.0541 -5.3239 5.9914 37 1 7.4090 -4.6272 5.9124 38 1 8.5948 -4.4957 8.4291 39 1 7.0413 -6.2480 9.4619 40 1 5.6037 -6.6578 7.1113 41 1 6.6498 -8.0286 7.5853 42 1 5.4723 -5.1120 5.5696 43 1 4.1352 -5.1187 3.5152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815214898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:51 Heat of formation + Delta-G solvation = -63.052099 kcal Electronic energy + Delta-G solvation = -25029.119371 eV Core-core repulsion = 21233.632412 eV Total energy + Delta-G solvation = -3795.486959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05517 -40.20311 -38.20110 -36.99922 -35.98987 -33.33149 -32.78687 -31.45416 -30.31194 -29.11072 -28.83862 -26.94595 -24.67062 -22.97115 -22.72739 -22.33006 -21.64661 -20.55320 -19.82023 -18.23101 -17.58388 -16.98253 -16.48602 -16.41104 -16.01254 -15.33648 -15.14212 -14.85744 -14.64696 -14.39954 -14.15871 -14.04544 -13.65300 -13.43175 -13.36981 -12.95540 -12.77936 -12.64943 -12.35990 -12.16799 -11.98301 -11.72803 -11.54820 -11.43433 -10.95743 -10.86913 -10.79223 -10.47560 -10.38573 -10.08284 -10.05217 -9.32340 -9.15311 -9.02264 -8.89937 -8.79673 -8.23701 -6.14159 -4.15867 0.38431 1.12885 1.72142 2.43359 2.73482 3.28475 3.33496 3.38909 3.41367 3.51487 4.23098 4.30454 4.40310 4.53861 4.65145 4.66697 4.74703 4.93900 5.04955 5.06300 5.08880 5.18129 5.21580 5.22482 5.27285 5.28902 5.45032 5.49968 5.75554 5.79423 5.85561 5.92092 5.93376 5.97211 6.05564 6.07800 6.17605 6.37629 6.38421 6.54467 6.92553 7.03054 7.37363 7.75804 7.81742 8.10257 8.50070 8.96809 9.48988 10.97391 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.002760 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.592431 B =10141.643100 C =12129.682726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.507 3.493 15 O -0.514 6.514 16 C -0.125 4.125 17 C -0.048 4.048 18 C -0.107 4.107 19 C 0.108 3.892 20 N -0.474 5.474 21 C 0.051 3.949 22 C -0.166 4.166 23 C -0.169 4.169 24 C 0.054 3.946 25 C -0.165 4.165 26 C -0.044 4.044 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.015 -15.825 14.633 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.252 6.252 14 C 0.352 3.648 15 O -0.405 6.405 16 C -0.126 4.126 17 C -0.066 4.066 18 C -0.126 4.126 19 C 0.013 3.987 20 N -0.195 5.195 21 C -0.075 4.075 22 C -0.184 4.184 23 C -0.187 4.187 24 C -0.071 4.071 25 C -0.185 4.185 26 C -0.063 4.063 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.148 0.852 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.510 -16.308 14.274 25.538 hybrid contribution -0.674 1.495 -0.046 1.641 sum 12.836 -14.813 14.227 24.220 Atomic orbital electron populations 1.69959 1.06106 1.27214 1.50517 1.24950 0.94985 0.99450 0.95103 0.86331 0.79671 0.82194 0.78278 1.20432 1.21047 1.19601 1.21048 0.94097 0.89292 1.50881 0.91514 1.20238 0.88738 0.83494 0.95507 1.87922 1.35312 1.12605 1.95229 1.22326 0.93226 0.85450 1.00617 1.23246 0.93631 0.98871 0.84077 1.86644 1.43247 1.53626 1.41692 1.21069 0.78859 0.78237 0.86586 1.90817 1.68252 1.38239 1.43149 1.19255 0.99000 1.00557 0.93766 1.21113 0.92044 0.96317 0.97170 1.20775 1.00471 0.99122 0.92201 1.19271 0.92276 0.94974 0.92133 1.63123 1.29018 1.26962 1.00368 1.22275 1.01823 0.89038 0.94355 1.23627 0.99785 0.99628 0.95353 1.23605 0.98504 0.97350 0.99280 1.22229 0.95680 1.01270 0.87930 1.21537 0.97207 1.00701 0.99075 1.21368 0.97813 0.95795 0.91317 0.92616 0.97601 0.97501 0.91842 0.93184 0.90354 0.90302 0.84041 0.84325 0.88973 0.91208 0.84278 0.84347 0.91484 0.89063 0.85200 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -15.14 9.43 -34.44 -0.32 -15.47 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 5.29 5.69 36.00 0.20 5.50 16 10 O -0.39 -9.43 10.30 -38.81 -0.40 -9.83 16 11 C 0.06 1.12 6.33 37.16 0.24 1.35 16 12 C 0.08 1.20 5.85 37.16 0.22 1.42 16 13 O -0.34 -5.70 9.43 -43.46 -0.41 -6.11 16 14 C 0.51 7.97 7.89 34.45 0.27 8.24 16 15 O -0.51 -8.81 16.13 -19.28 -0.31 -9.12 16 16 C -0.12 -1.64 5.88 -104.96 -0.62 -2.26 16 17 C -0.05 -0.53 9.56 -39.39 -0.38 -0.91 16 18 C -0.11 -1.05 9.93 -39.62 -0.39 -1.44 16 19 C 0.11 1.09 4.90 -83.86 -0.41 0.67 16 20 N -0.47 -4.32 5.56 -171.17 -0.95 -5.27 16 21 C 0.05 0.41 6.42 -4.04 -0.03 0.39 16 22 C -0.17 -1.13 10.96 -35.85 -0.39 -1.53 16 23 C -0.17 -1.13 10.95 -35.85 -0.39 -1.52 16 24 C 0.05 0.42 6.46 -4.04 -0.03 0.40 16 25 C -0.17 -1.72 7.62 -39.62 -0.30 -2.03 16 26 C -0.04 -0.54 9.58 -39.38 -0.38 -0.91 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.14 1.46 7.64 -52.49 -0.40 1.06 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.59 6.29 -51.93 -0.33 0.27 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.07 0.53 6.71 -51.93 -0.35 0.18 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.13 1.19 7.01 -52.49 -0.37 0.82 16 43 H 0.15 1.84 7.60 -52.49 -0.40 1.44 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -33.22 369.16 -9.64 -42.86 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.04 Total: -2.28 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.81 Total: -6.57 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: -0.22 Total: -31.25 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.12 Total: -25.05 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.22 -9.64 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815214898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.196 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds