Wall clock time and date at job start Tue Mar 31 2020 11:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00215 * 2 1 4 4 H 1.48502 * 109.47033 * 270.00214 * 3 2 1 5 5 H 1.48504 * 109.46838 * 29.99911 * 3 2 1 6 6 H 1.48497 * 109.46998 * 149.99878 * 3 2 1 7 7 C 1.37883 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99648 * 359.97438 * 7 2 1 10 10 O 1.42911 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.42894 * 113.99944 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46696 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.47141 * 65.00157 * 12 11 10 14 14 C 1.34767 * 117.00124 * 179.97438 * 13 12 11 15 15 O 1.21518 * 119.99684 * 359.97438 * 14 13 12 16 16 C 1.47378 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.39854 * 120.07346 * 179.97438 * 16 14 13 18 18 C 1.37111 * 119.92369 * 179.97438 * 17 16 14 19 19 C 1.39244 * 120.07492 * 359.97438 * 18 17 16 20 20 N 1.39011 * 119.92800 * 180.02562 * 19 18 17 21 21 C 1.48220 * 111.00307 * 126.53451 * 20 19 18 22 22 C 1.51116 * 105.44264 * 144.85418 * 21 20 19 23 23 C 1.31121 * 109.36918 * 343.13929 * 22 21 20 24 24 C 1.48231 * 110.99901 * 240.17566 * 20 19 18 25 25 C 1.39241 * 120.14676 * 0.29004 * 19 18 17 26 26 C 1.37107 * 120.07438 * 359.45182 * 25 19 18 27 27 H 0.97002 * 120.00036 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47500 * 60.00485 * 9 7 2 29 29 H 1.08996 * 109.47592 * 299.99543 * 9 7 2 30 30 H 1.08992 * 109.47149 * 60.00530 * 11 10 9 31 31 H 1.09002 * 109.47438 * 299.99893 * 11 10 9 32 32 H 1.08995 * 109.47522 * 305.00182 * 12 11 10 33 33 H 1.09007 * 109.47144 * 185.00023 * 12 11 10 34 34 H 1.07993 * 120.03932 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.96280 * 180.02562 * 18 17 16 36 36 H 1.09001 * 110.26818 * 263.87544 * 21 20 19 37 37 H 1.08998 * 110.26818 * 25.83173 * 21 20 19 38 38 H 1.07996 * 125.27389 * 163.07273 * 22 21 20 39 39 H 1.07996 * 125.24749 * 179.97438 * 23 22 21 40 40 H 1.08995 * 110.26757 * 334.07016 * 24 20 19 41 41 H 1.08997 * 110.26330 * 96.03674 * 24 20 19 42 42 H 1.07996 * 119.95891 * 179.70668 * 25 19 18 43 43 H 1.07996 * 120.04052 * 180.29787 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5854 0.0015 11 6 1.5650 -4.8754 0.0019 12 6 2.6480 -5.9562 0.0023 13 8 3.3992 -5.8882 1.2429 14 6 4.3973 -6.7794 1.4035 15 8 4.6329 -7.5914 0.5307 16 6 5.2030 -6.7692 2.6375 17 6 6.2387 -7.6938 2.8059 18 6 6.9867 -7.6812 3.9550 19 6 6.7164 -6.7490 4.9534 20 7 7.4770 -6.7386 6.1169 21 6 8.0357 -5.3901 6.3744 22 6 8.0302 -5.2325 7.8773 23 6 7.2345 -6.1307 8.4058 24 6 6.6278 -6.9745 7.3087 25 6 5.6823 -5.8307 4.7912 26 6 4.9340 -5.8343 3.6424 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8919 30 1 0.9446 -4.9826 -0.8877 31 1 0.9452 -4.9824 0.8922 32 1 3.3215 -5.7960 -0.8395 33 1 2.1820 -6.9376 -0.0869 34 1 6.4497 -8.4162 2.0314 35 1 7.7869 -8.3946 4.0855 36 1 9.0541 -5.3239 5.9914 37 1 7.4090 -4.6272 5.9124 38 1 8.5948 -4.4957 8.4291 39 1 7.0413 -6.2480 9.4619 40 1 5.6037 -6.6578 7.1113 41 1 6.6498 -8.0286 7.5853 42 1 5.4723 -5.1120 5.5696 43 1 4.1352 -5.1187 3.5152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815214898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:50 Heat of formation + Delta-G solvation = -82.676383 kcal Electronic energy + Delta-G solvation = -25029.970344 eV Core-core repulsion = 21233.632412 eV Total energy + Delta-G solvation = -3796.337932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93084 -41.27053 -39.13135 -38.61107 -37.41859 -34.96517 -34.06791 -32.35261 -31.73001 -30.09342 -29.42783 -28.98555 -25.61796 -24.57212 -23.86724 -23.76433 -22.74265 -21.51331 -20.34724 -19.27828 -18.73878 -18.48459 -17.94739 -17.87662 -17.08571 -16.87976 -16.39715 -16.24310 -15.83618 -15.75661 -15.33728 -14.85313 -14.74300 -14.52784 -14.39311 -14.09637 -13.94562 -13.71729 -13.37286 -13.22743 -13.15067 -13.00913 -12.90925 -12.72017 -12.51205 -12.35785 -12.26328 -12.04012 -11.78044 -11.68756 -11.29983 -10.91260 -10.67891 -10.29060 -10.18611 -9.90392 -9.42587 -8.33842 -6.46009 -0.56812 0.26637 1.20636 1.34585 1.39350 1.41871 1.53982 1.55717 2.33228 2.57796 2.72577 3.00136 3.04073 3.51311 3.64168 3.74445 3.81830 3.89003 3.90281 4.08296 4.12828 4.25110 4.38744 4.44807 4.46048 4.47254 4.51790 4.51969 4.62259 4.67347 4.83802 4.91507 4.95311 4.99440 5.15802 5.19080 5.26447 5.32254 5.35289 5.43101 5.52742 5.53796 5.86913 5.93519 6.15919 6.47689 6.59237 6.77858 7.25612 8.78367 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.002760 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.592431 B =10141.643100 C =12129.682726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.078 3.922 13 O -0.353 6.353 14 C 0.507 3.493 15 O -0.534 6.534 16 C -0.146 4.146 17 C -0.043 4.043 18 C -0.102 4.102 19 C 0.116 3.884 20 N -0.481 5.481 21 C 0.045 3.955 22 C -0.171 4.171 23 C -0.169 4.169 24 C 0.049 3.951 25 C -0.163 4.163 26 C -0.051 4.051 27 H 0.271 0.729 28 H -0.008 1.008 29 H -0.010 1.010 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.141 0.859 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.411 -15.758 15.967 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.269 6.269 14 C 0.354 3.646 15 O -0.426 6.426 16 C -0.147 4.147 17 C -0.062 4.062 18 C -0.121 4.121 19 C 0.021 3.979 20 N -0.202 5.202 21 C -0.081 4.081 22 C -0.189 4.189 23 C -0.187 4.187 24 C -0.076 4.076 25 C -0.183 4.183 26 C -0.070 4.070 27 H 0.080 0.920 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.166 0.834 35 H 0.178 0.822 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.159 0.841 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.903 -16.263 15.614 27.026 hybrid contribution -1.098 1.374 -0.399 1.803 sum 13.805 -14.890 15.215 25.373 Atomic orbital electron populations 1.70056 1.07665 1.28710 1.50376 1.25933 0.95972 1.03285 0.93871 0.85205 0.78382 0.77108 0.78863 1.19306 1.19740 1.18984 1.21376 0.94040 0.90941 1.52433 0.92264 1.19872 0.88545 0.84343 0.93912 1.87868 1.35541 1.14197 1.95338 1.22649 0.94398 0.83277 1.01953 1.23248 0.93119 0.99381 0.83769 1.86638 1.43902 1.54381 1.41981 1.21490 0.78423 0.77487 0.87166 1.90791 1.68798 1.38960 1.44021 1.19259 1.00044 1.02230 0.93214 1.21217 0.91378 0.95787 0.97809 1.20992 1.00464 0.99227 0.91402 1.19435 0.91654 0.94276 0.92528 1.63192 1.29017 1.27581 1.00401 1.22349 1.01747 0.88353 0.95614 1.23780 1.00326 1.00306 0.94480 1.23795 0.98087 0.96824 0.99983 1.22325 0.95448 1.02051 0.87807 1.21624 0.96997 1.01037 0.98625 1.21304 0.98082 0.95689 0.91948 0.91962 0.98993 0.99209 0.89812 0.92460 0.90900 0.87133 0.83351 0.82188 0.88722 0.91823 0.82461 0.82299 0.91766 0.88364 0.84100 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 44.31 29.54 68.60 2.03 46.33 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -32.97 9.43 25.60 0.24 -32.73 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.67 5.69 71.24 0.41 12.07 16 10 O -0.41 -20.22 10.30 -145.56 -1.50 -21.72 16 11 C 0.05 1.97 6.33 71.98 0.46 2.43 16 12 C 0.08 2.49 5.85 71.98 0.42 2.91 16 13 O -0.35 -12.16 9.43 -54.11 -0.51 -12.67 16 14 C 0.51 16.16 7.89 70.23 0.55 16.72 16 15 O -0.53 -18.36 16.13 19.78 0.32 -18.04 16 16 C -0.15 -3.87 5.88 -20.09 -0.12 -3.99 16 17 C -0.04 -0.93 9.56 22.40 0.21 -0.72 16 18 C -0.10 -1.85 9.93 22.25 0.22 -1.63 16 19 C 0.12 2.18 4.90 38.49 0.19 2.37 16 20 N -0.48 -7.95 5.56 -695.45 -3.87 -11.81 16 21 C 0.04 0.67 6.42 85.43 0.55 1.21 16 22 C -0.17 -1.97 10.96 25.66 0.28 -1.69 16 23 C -0.17 -1.86 10.95 25.66 0.28 -1.58 16 24 C 0.05 0.67 6.46 85.43 0.55 1.22 16 25 C -0.16 -3.31 7.62 22.25 0.17 -3.14 16 26 C -0.05 -1.27 9.58 22.40 0.21 -1.05 16 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 34 H 0.15 2.94 7.64 -2.91 -0.02 2.92 16 35 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.02 6.29 -2.39 -0.02 1.00 16 38 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.06 0.92 6.71 -2.39 -0.02 0.91 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.14 2.49 7.01 -2.91 -0.02 2.47 16 43 H 0.13 3.56 7.60 -2.91 -0.02 3.54 16 Total: -1.00 -71.21 369.16 2.85 -68.36 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.01 Total: 11.44 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.09 Total: -6.68 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -3.58 Total: -67.03 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -1.69 Total: -52.43 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -71.21 2.85 -68.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815214898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.313 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds