Wall clock time and date at job start Tue Mar 31 2020 11:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00224 * 2 1 4 4 H 1.48500 * 109.47486 * 270.00628 * 3 2 1 5 5 H 1.48503 * 109.47040 * 30.00745 * 3 2 1 6 6 H 1.48502 * 109.47209 * 150.00231 * 3 2 1 7 7 C 1.37882 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00186 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99589 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46918 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47413 * 179.97438 * 10 9 7 12 12 O 1.45205 * 109.47211 * 180.02562 * 11 10 9 13 13 C 1.34754 * 116.99926 * 179.97438 * 12 11 10 14 14 O 1.21517 * 119.99579 * 0.02562 * 13 12 11 15 15 C 1.47376 * 119.99867 * 180.02562 * 13 12 11 16 16 C 1.39747 * 120.20849 * 4.92664 * 15 13 12 17 17 C 1.37774 * 119.91757 * 179.72883 * 16 15 13 18 18 C 1.38578 * 120.33984 * 0.25578 * 17 16 15 19 19 C 1.38022 * 120.41528 * 0.02562 * 18 17 16 20 20 C 1.38845 * 120.07687 * 359.97438 * 19 18 17 21 21 N 1.39255 * 120.16961 * 179.97438 * 20 19 18 22 22 C 1.34776 * 120.00125 * 324.64530 * 21 20 19 23 23 O 1.21276 * 119.99910 * 4.46713 * 22 21 20 24 24 C 1.50697 * 120.00041 * 184.47305 * 22 21 20 25 25 C 1.52993 * 117.50077 * 248.74321 * 24 22 21 26 26 C 1.53002 * 117.50034 * 180.08250 * 24 22 21 27 27 H 0.97004 * 119.99471 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47326 * 60.00009 * 9 7 2 29 29 H 1.09001 * 109.47116 * 299.99488 * 9 7 2 30 30 H 1.09009 * 109.46882 * 59.99682 * 10 9 7 31 31 H 1.09000 * 109.47261 * 300.00700 * 10 9 7 32 32 H 1.08993 * 109.47033 * 60.00101 * 11 10 9 33 33 H 1.09001 * 109.46914 * 299.99883 * 11 10 9 34 34 H 1.08002 * 120.03885 * 0.02562 * 16 15 13 35 35 H 1.08002 * 119.82841 * 180.23464 * 17 16 15 36 36 H 1.07992 * 119.79429 * 179.97438 * 18 17 16 37 37 H 1.08003 * 119.96267 * 180.02562 * 19 18 17 38 38 H 0.97002 * 120.00205 * 144.64318 * 21 20 19 39 39 H 1.09002 * 115.55246 * 34.41746 * 24 22 21 40 40 H 1.09002 * 117.50109 * 0.02562 * 25 24 22 41 41 H 1.09002 * 117.50340 * 145.01762 * 25 24 22 42 42 H 1.09002 * 117.50025 * 214.98256 * 26 24 22 43 43 H 1.08999 * 117.49303 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 8 6.0354 -4.0057 -0.0027 13 6 7.3713 -4.1823 -0.0044 14 8 8.1115 -3.2186 -0.0049 15 6 7.9345 -5.5442 -0.0055 16 6 7.0912 -6.6538 -0.1087 17 6 7.6246 -7.9241 -0.1148 18 6 8.9944 -8.1086 -0.0138 19 6 9.8396 -7.0229 0.0946 20 6 9.3206 -5.7351 0.1025 21 7 10.1716 -4.6383 0.2123 22 6 11.2796 -4.7186 0.9755 23 8 11.5787 -5.7698 1.5013 24 6 12.1466 -3.5024 1.1755 25 6 13.5356 -3.5118 0.5343 26 6 13.3915 -3.6586 2.0511 27 1 -0.4849 0.8401 0.0004 28 1 3.8752 -0.6805 0.8888 29 1 3.8745 -0.6801 -0.8912 30 1 3.6577 -3.1507 -0.8908 31 1 3.6584 -3.1503 0.8892 32 1 5.9155 -2.1226 0.8872 33 1 5.9141 -2.1232 -0.8927 34 1 6.0231 -6.5155 -0.1883 35 1 6.9719 -8.7804 -0.1984 36 1 9.4029 -9.1082 -0.0191 37 1 10.9060 -7.1751 0.1724 38 1 9.9670 -3.8164 -0.2606 39 1 11.6180 -2.5500 1.2176 40 1 13.8223 -4.3975 -0.0327 41 1 13.9211 -2.5655 0.1547 42 1 13.6822 -2.8088 2.6689 43 1 13.5831 -4.6409 2.4828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815516303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:07 Heat of formation + Delta-G solvation = -74.975929 kcal Electronic energy + Delta-G solvation = -25272.581651 eV Core-core repulsion = 21476.577636 eV Total energy + Delta-G solvation = -3796.004015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31024 -40.16545 -38.79055 -36.74497 -36.53161 -34.96682 -34.11693 -32.07102 -31.48396 -30.18082 -27.70164 -25.50910 -24.44415 -23.19137 -22.85238 -22.32306 -21.15516 -20.30891 -20.23941 -18.04847 -17.90907 -17.66370 -17.06698 -16.53170 -16.45943 -15.82501 -15.43538 -15.08467 -14.90954 -14.38302 -14.28643 -14.20343 -14.10732 -13.19266 -13.04535 -12.97323 -12.78241 -12.39541 -12.35448 -11.99646 -11.95948 -11.84671 -11.11310 -11.06936 -11.01697 -10.98620 -10.89172 -10.56110 -10.50341 -10.15699 -10.03144 -9.85602 -9.76467 -9.31274 -9.28397 -8.59749 -8.51737 -6.09847 -4.09050 0.40641 1.00697 2.08957 2.41757 2.67559 2.68195 3.27095 3.34958 3.37768 3.39580 3.54785 4.20582 4.34616 4.40031 4.45153 4.48015 4.62616 4.71200 4.75879 5.03941 5.09029 5.16337 5.17493 5.23253 5.35622 5.39253 5.41572 5.51311 5.64013 5.69949 5.78241 5.86277 5.94629 6.08436 6.17976 6.25403 6.33769 6.56200 6.60302 6.73343 7.11513 7.16682 7.28120 7.65043 7.72103 7.78741 8.46619 8.94407 9.51495 11.03306 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002611 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.124646 B =10721.547777 C =12399.323549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.067 3.933 12 O -0.346 6.346 13 C 0.514 3.486 14 O -0.522 6.522 15 C -0.158 4.158 16 C -0.040 4.040 17 C -0.150 4.150 18 C -0.066 4.066 19 C -0.140 4.140 20 C 0.211 3.789 21 N -0.659 5.659 22 C 0.546 3.454 23 O -0.524 6.524 24 C -0.197 4.197 25 C -0.151 4.151 26 C -0.145 4.145 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.426 0.574 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.101 -13.208 -0.499 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.140 4.140 11 C -0.006 4.006 12 O -0.262 6.262 13 C 0.360 3.640 14 O -0.413 6.413 15 C -0.162 4.162 16 C -0.059 4.059 17 C -0.169 4.169 18 C -0.085 4.085 19 C -0.160 4.160 20 C 0.114 3.886 21 N -0.309 5.309 22 C 0.335 3.665 23 O -0.400 6.400 24 C -0.218 4.218 25 C -0.188 4.188 26 C -0.182 4.182 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.270 0.730 39 H 0.148 0.852 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 26.354 -13.419 -0.106 29.573 hybrid contribution 0.053 1.596 -0.226 1.613 sum 26.406 -11.823 -0.333 28.934 Atomic orbital electron populations 1.69908 1.06284 1.26998 1.50755 1.25019 0.94763 0.99183 0.94455 0.86781 0.80363 0.83591 0.78582 1.20200 1.21269 1.19005 1.21045 0.89002 0.94681 1.51284 0.90775 1.19516 0.97577 0.90989 0.96664 1.21575 0.88569 1.00885 1.02924 1.23557 0.97173 0.77665 1.02218 1.86562 1.22129 1.34522 1.82991 1.20941 0.81613 0.88989 0.72433 1.90621 1.60288 1.42749 1.47684 1.19020 0.91751 0.91520 1.13917 1.21413 1.00385 0.91001 0.93056 1.21168 0.95389 0.97203 1.03129 1.21333 0.93377 0.98917 0.94833 1.21250 1.01701 0.90156 1.02896 1.17689 0.87422 0.88088 0.95419 1.43795 1.22842 1.16396 1.47842 1.19898 0.80257 0.89319 0.77072 1.90679 1.70936 1.30292 1.48118 1.22173 0.90941 0.98388 1.10267 1.22991 0.95057 1.04227 0.96553 1.22996 0.97183 1.04630 0.93380 0.92619 0.96291 0.96711 0.91449 0.91431 0.91376 0.91333 0.83647 0.84853 0.84998 0.83612 0.72998 0.85155 0.88142 0.87451 0.87610 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 10 C -0.10 -1.97 5.53 -26.73 -0.15 -2.12 16 11 C 0.07 1.12 5.48 37.16 0.20 1.32 16 12 O -0.35 -5.42 9.48 -40.64 -0.39 -5.81 16 13 C 0.51 7.58 7.88 34.45 0.27 7.85 16 14 O -0.52 -8.14 13.68 -19.28 -0.26 -8.40 16 15 C -0.16 -2.01 5.89 -104.83 -0.62 -2.62 16 16 C -0.04 -0.42 9.61 -39.19 -0.38 -0.80 16 17 C -0.15 -1.30 10.02 -39.63 -0.40 -1.69 16 18 C -0.07 -0.57 10.03 -39.54 -0.40 -0.97 16 19 C -0.14 -1.52 8.68 -39.44 -0.34 -1.86 16 20 C 0.21 2.58 6.30 -83.48 -0.53 2.06 16 21 N -0.66 -7.68 4.69 -9.68 -0.05 -7.73 16 22 C 0.55 6.24 7.45 -10.99 -0.08 6.15 16 23 O -0.52 -7.13 13.71 5.56 0.08 -7.05 16 24 C -0.20 -1.66 6.19 -91.78 -0.57 -2.23 16 25 C -0.15 -0.96 10.24 -26.70 -0.27 -1.24 16 26 C -0.14 -1.04 10.05 -26.69 -0.27 -1.31 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.15 1.43 7.62 -52.49 -0.40 1.03 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.15 1.61 6.25 -52.48 -0.33 1.28 16 38 H 0.43 4.81 6.32 -40.82 -0.26 4.55 16 39 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -32.66 366.41 -9.02 -41.68 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.96 Total: 2.72 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -4.06 Total: -10.95 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.73 Total: -34.48 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.57 Total: -21.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.66 -9.02 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815516303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.298 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds