Wall clock time and date at job start Tue Mar 31 2020 11:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00224 * 2 1 4 4 H 1.48500 * 109.47486 * 270.00628 * 3 2 1 5 5 H 1.48503 * 109.47040 * 30.00745 * 3 2 1 6 6 H 1.48502 * 109.47209 * 150.00231 * 3 2 1 7 7 C 1.37882 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00186 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99589 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46918 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47413 * 179.97438 * 10 9 7 12 12 O 1.45205 * 109.47211 * 180.02562 * 11 10 9 13 13 C 1.34754 * 116.99926 * 179.97438 * 12 11 10 14 14 O 1.21517 * 119.99579 * 0.02562 * 13 12 11 15 15 C 1.47376 * 119.99867 * 180.02562 * 13 12 11 16 16 C 1.39747 * 120.20849 * 4.92664 * 15 13 12 17 17 C 1.37774 * 119.91757 * 179.72883 * 16 15 13 18 18 C 1.38578 * 120.33984 * 0.25578 * 17 16 15 19 19 C 1.38022 * 120.41528 * 0.02562 * 18 17 16 20 20 C 1.38845 * 120.07687 * 359.97438 * 19 18 17 21 21 N 1.39255 * 120.16961 * 179.97438 * 20 19 18 22 22 C 1.34776 * 120.00125 * 324.64530 * 21 20 19 23 23 O 1.21276 * 119.99910 * 4.46713 * 22 21 20 24 24 C 1.50697 * 120.00041 * 184.47305 * 22 21 20 25 25 C 1.52993 * 117.50077 * 248.74321 * 24 22 21 26 26 C 1.53002 * 117.50034 * 180.08250 * 24 22 21 27 27 H 0.97004 * 119.99471 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47326 * 60.00009 * 9 7 2 29 29 H 1.09001 * 109.47116 * 299.99488 * 9 7 2 30 30 H 1.09009 * 109.46882 * 59.99682 * 10 9 7 31 31 H 1.09000 * 109.47261 * 300.00700 * 10 9 7 32 32 H 1.08993 * 109.47033 * 60.00101 * 11 10 9 33 33 H 1.09001 * 109.46914 * 299.99883 * 11 10 9 34 34 H 1.08002 * 120.03885 * 0.02562 * 16 15 13 35 35 H 1.08002 * 119.82841 * 180.23464 * 17 16 15 36 36 H 1.07992 * 119.79429 * 179.97438 * 18 17 16 37 37 H 1.08003 * 119.96267 * 180.02562 * 19 18 17 38 38 H 0.97002 * 120.00205 * 144.64318 * 21 20 19 39 39 H 1.09002 * 115.55246 * 34.41746 * 24 22 21 40 40 H 1.09002 * 117.50109 * 0.02562 * 25 24 22 41 41 H 1.09002 * 117.50340 * 145.01762 * 25 24 22 42 42 H 1.09002 * 117.50025 * 214.98256 * 26 24 22 43 43 H 1.08999 * 117.49303 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 8 6.0354 -4.0057 -0.0027 13 6 7.3713 -4.1823 -0.0044 14 8 8.1115 -3.2186 -0.0049 15 6 7.9345 -5.5442 -0.0055 16 6 7.0912 -6.6538 -0.1087 17 6 7.6246 -7.9241 -0.1148 18 6 8.9944 -8.1086 -0.0138 19 6 9.8396 -7.0229 0.0946 20 6 9.3206 -5.7351 0.1025 21 7 10.1716 -4.6383 0.2123 22 6 11.2796 -4.7186 0.9755 23 8 11.5787 -5.7698 1.5013 24 6 12.1466 -3.5024 1.1755 25 6 13.5356 -3.5118 0.5343 26 6 13.3915 -3.6586 2.0511 27 1 -0.4849 0.8401 0.0004 28 1 3.8752 -0.6805 0.8888 29 1 3.8745 -0.6801 -0.8912 30 1 3.6577 -3.1507 -0.8908 31 1 3.6584 -3.1503 0.8892 32 1 5.9155 -2.1226 0.8872 33 1 5.9141 -2.1232 -0.8927 34 1 6.0231 -6.5155 -0.1883 35 1 6.9719 -8.7804 -0.1984 36 1 9.4029 -9.1082 -0.0191 37 1 10.9060 -7.1751 0.1724 38 1 9.9670 -3.8164 -0.2606 39 1 11.6180 -2.5500 1.2176 40 1 13.8223 -4.3975 -0.0327 41 1 13.9211 -2.5655 0.1547 42 1 13.6822 -2.8088 2.6689 43 1 13.5831 -4.6409 2.4828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815516303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:07 Heat of formation + Delta-G solvation = -92.938201 kcal Electronic energy + Delta-G solvation = -25273.360554 eV Core-core repulsion = 21476.577636 eV Total energy + Delta-G solvation = -3796.782917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23684 -41.20487 -39.64264 -37.89578 -37.23432 -36.04777 -35.74623 -33.91886 -32.51100 -30.98508 -29.44650 -26.39524 -25.51739 -24.51772 -23.48120 -23.22589 -22.24373 -21.93081 -21.08234 -19.05573 -19.02566 -18.71652 -18.51116 -17.79421 -17.71216 -16.65481 -16.30448 -16.21896 -15.87693 -15.77250 -15.56862 -15.18233 -14.95485 -14.81071 -14.36668 -14.15909 -13.80040 -13.65257 -13.65061 -13.13324 -12.87013 -12.67343 -12.58294 -12.47011 -12.13806 -12.04993 -11.77625 -11.72711 -11.64553 -11.55518 -11.43041 -11.38037 -11.34432 -10.96793 -10.77913 -10.14401 -9.35085 -8.30533 -6.35607 -0.48130 0.20794 1.28430 1.36619 1.38279 1.38907 1.49694 1.52194 1.88604 2.35383 2.68884 2.83008 3.04693 3.46585 3.50759 3.74182 3.74890 3.92097 3.99179 3.99748 4.03127 4.14219 4.30168 4.31125 4.33852 4.38015 4.69459 4.70188 4.73011 4.83143 4.85978 4.94389 4.97304 5.07118 5.17238 5.19806 5.22791 5.34918 5.41695 5.46265 5.48111 5.61648 5.83422 6.24929 6.25431 6.53614 6.72433 6.91048 7.28884 8.86024 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002611 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.124646 B =10721.547777 C =12399.323549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.035 0.965 9 C -0.009 4.009 10 C -0.093 4.093 11 C 0.076 3.924 12 O -0.350 6.350 13 C 0.511 3.489 14 O -0.535 6.535 15 C -0.179 4.179 16 C -0.045 4.045 17 C -0.142 4.142 18 C -0.054 4.054 19 C -0.151 4.151 20 C 0.193 3.807 21 N -0.660 5.660 22 C 0.540 3.460 23 O -0.553 6.553 24 C -0.213 4.213 25 C -0.134 4.134 26 C -0.144 4.144 27 H 0.267 0.733 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.141 0.859 38 H 0.426 0.574 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.358 -13.286 -0.736 31.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.046 4.046 10 C -0.130 4.130 11 C 0.003 3.997 12 O -0.265 6.265 13 C 0.359 3.641 14 O -0.427 6.427 15 C -0.183 4.183 16 C -0.063 4.063 17 C -0.160 4.160 18 C -0.072 4.072 19 C -0.171 4.171 20 C 0.096 3.904 21 N -0.309 5.309 22 C 0.331 3.669 23 O -0.431 6.431 24 C -0.233 4.233 25 C -0.171 4.171 26 C -0.181 4.181 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.158 0.842 38 H 0.270 0.730 39 H 0.157 0.843 40 H 0.115 0.885 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 28.626 -13.514 -0.351 31.658 hybrid contribution -0.680 1.441 -0.158 1.601 sum 27.946 -12.073 -0.509 30.446 Atomic orbital electron populations 1.70064 1.08315 1.28251 1.52393 1.26019 0.95646 1.03573 0.94048 0.85656 0.79527 0.78150 0.79321 1.18990 1.21026 1.16874 1.21403 0.91728 0.93340 1.50718 0.94648 1.19442 0.94271 0.93658 0.97239 1.21327 0.90624 0.98441 1.02638 1.23248 0.95162 0.78522 1.02784 1.86537 1.23028 1.33590 1.83394 1.21340 0.80955 0.89873 0.71946 1.90606 1.60311 1.43358 1.48450 1.19017 0.92181 0.90889 1.16167 1.21612 1.00512 0.91381 0.92843 1.21532 0.95802 0.97307 1.01345 1.21742 0.93248 0.99755 0.92450 1.21356 1.01879 0.90337 1.03556 1.17940 0.87487 0.88852 0.96087 1.43857 1.22913 1.16329 1.47812 1.20443 0.80214 0.89908 0.76354 1.90651 1.71618 1.31565 1.49251 1.22238 0.91430 0.97344 1.12333 1.23113 0.92795 1.05276 0.95955 1.23074 0.96144 1.04687 0.94241 0.92411 0.95670 0.95579 0.91659 0.91951 0.91071 0.90545 0.83181 0.81604 0.81717 0.84158 0.73043 0.84265 0.88454 0.85083 0.85621 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.95 43.61 27.47 68.60 1.88 45.49 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.25 -10.38 6.54 99.48 0.65 -9.73 16 7 C -0.53 -30.47 9.66 25.60 0.25 -30.22 16 8 H 0.04 2.22 7.99 -2.91 -0.02 2.19 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.53 5.53 30.59 0.17 -3.36 16 11 C 0.08 2.46 5.48 71.98 0.39 2.85 16 12 O -0.35 -10.70 9.48 -56.64 -0.54 -11.23 16 13 C 0.51 14.88 7.88 70.23 0.55 15.43 16 14 O -0.53 -16.49 13.68 19.78 0.27 -16.22 16 15 C -0.18 -4.44 5.89 -20.00 -0.12 -4.56 16 16 C -0.04 -0.89 9.61 22.52 0.22 -0.67 16 17 C -0.14 -2.05 10.02 22.24 0.22 -1.82 16 18 C -0.05 -0.79 10.03 22.30 0.22 -0.57 16 19 C -0.15 -3.14 8.68 22.36 0.19 -2.95 16 20 C 0.19 4.69 6.30 38.62 0.24 4.93 16 21 N -0.66 -15.48 4.69 -302.93 -1.42 -16.90 16 22 C 0.54 12.41 7.45 87.66 0.65 13.06 16 23 O -0.55 -15.25 13.71 -3.02 -0.04 -15.29 16 24 C -0.21 -3.44 6.19 -11.54 -0.07 -3.51 16 25 C -0.13 -1.50 10.24 30.62 0.31 -1.19 16 26 C -0.14 -1.91 10.05 30.62 0.31 -1.60 16 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 29 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 30 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.15 2.76 7.62 -2.91 -0.02 2.74 16 35 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.14 3.07 6.25 -2.91 -0.02 3.05 16 38 H 0.43 9.71 6.32 -92.71 -0.59 9.12 16 39 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -72.03 366.41 4.98 -67.06 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.39 Total: 19.86 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.13 Total: -13.74 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -1.12 Total: -75.92 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.31 Total: -42.74 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -72.03 4.98 -67.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815516303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.883 kcal (2) G-P(sol) polarization free energy of solvation -72.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds