Wall clock time and date at job start Tue Mar 31 2020 12:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99946 * 2 1 4 4 O 1.21550 * 120.00435 * 183.35323 * 3 2 1 5 5 C 1.47889 * 119.99861 * 3.34707 * 3 2 1 6 6 C 1.39910 * 120.02732 * 328.70056 * 5 3 2 7 7 C 1.38327 * 120.36227 * 179.97438 * 6 5 3 8 8 C 1.37758 * 120.40894 * 359.73950 * 7 6 5 9 9 C 1.40749 * 120.03748 * 0.51807 * 8 7 6 10 10 C 1.41444 * 120.17736 * 179.76547 * 9 8 7 11 11 H 1.07992 * 119.99774 * 155.11519 * 10 9 8 12 12 C 1.39938 * 119.99700 * 335.12097 * 10 9 8 13 13 N 1.30832 * 119.99669 * 329.81572 * 12 10 9 14 14 Si 1.86802 * 120.00072 * 149.54796 * 12 10 9 15 15 H 1.48493 * 109.47270 * 180.27216 * 14 12 10 16 16 H 1.48500 * 109.46742 * 300.27207 * 14 12 10 17 17 H 1.48501 * 109.47105 * 60.26928 * 14 12 10 18 18 C 1.38994 * 120.02387 * 148.67434 * 5 3 2 19 19 C 1.46501 * 120.00411 * 179.97438 * 2 1 3 20 20 H 1.09002 * 110.32966 * 180.70369 * 19 2 1 21 21 C 1.54490 * 110.36603 * 58.46090 * 19 2 1 22 22 C 1.54783 * 102.05221 * 225.87436 * 21 19 2 23 23 C 1.52998 * 110.36075 * 268.01260 * 22 21 19 24 24 C 1.52991 * 110.47012 * 145.52271 * 22 21 19 25 25 O 1.45834 * 104.49039 * 26.73841 * 22 21 19 26 26 C 1.34061 * 109.90779 * 329.46157 * 25 22 21 27 27 O 1.20829 * 125.09241 * 200.80289 * 26 25 22 28 28 H 1.09001 * 109.46709 * 94.99572 * 1 2 3 29 29 H 1.08999 * 109.46658 * 214.98811 * 1 2 3 30 30 H 1.08998 * 109.47010 * 334.99063 * 1 2 3 31 31 H 1.08000 * 119.81956 * 359.97438 * 6 5 3 32 32 H 1.07998 * 119.79662 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.98228 * 180.25575 * 8 7 6 34 34 H 0.96992 * 120.00241 * 352.41705 * 13 12 10 35 35 H 1.08001 * 120.20326 * 0.04722 * 18 5 3 36 36 H 1.08999 * 110.86854 * 343.98743 * 21 19 2 37 37 H 1.09005 * 110.86516 * 107.66104 * 21 19 2 38 38 H 1.08995 * 109.47311 * 176.49228 * 23 22 21 39 39 H 1.09008 * 109.47158 * 296.48658 * 23 22 21 40 40 H 1.08992 * 109.47638 * 56.48667 * 23 22 21 41 41 H 1.09000 * 109.47492 * 303.44962 * 24 22 21 42 42 H 1.09007 * 109.47377 * 63.44961 * 24 22 21 43 43 H 1.08998 * 109.47311 * 183.44657 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3528 1.1682 -0.0616 5 6 1.4013 2.4468 0.0748 6 6 0.1247 2.5530 -0.4878 7 6 -0.5716 3.7464 -0.4214 8 6 -0.0188 4.8424 0.2038 9 6 1.2665 4.7562 0.7708 10 6 1.8390 5.8811 1.4092 11 1 2.5957 5.7446 2.1675 12 6 1.4247 7.1708 1.0581 13 7 1.0108 7.4164 -0.1585 14 14 1.4556 8.5400 2.3285 15 1 0.9656 9.7987 1.7117 16 1 0.5799 8.1749 3.4710 17 1 2.8458 8.7345 2.8129 18 6 1.9755 3.5448 0.7045 19 6 2.1976 -1.2687 0.0006 20 1 3.2720 -1.0855 0.0130 21 6 1.8104 -2.1137 -1.2334 22 6 1.5876 -3.5128 -0.6101 23 6 2.8810 -4.3287 -0.6573 24 6 0.4623 -4.2501 -1.3386 25 8 1.2074 -3.2406 0.7712 26 6 1.7928 -2.1101 1.1915 27 8 1.9701 -1.8080 2.3479 28 1 -0.3633 -0.0895 -1.0238 29 1 -0.3632 -0.8419 0.5893 30 1 -0.3633 0.9313 0.4345 31 1 -0.3196 1.6986 -0.9767 32 1 -1.5563 3.8183 -0.8592 33 1 -0.5703 5.7696 0.2553 34 1 1.0936 6.7367 -0.8454 35 1 2.9609 3.4675 1.1399 36 1 0.8924 -1.7402 -1.6873 37 1 2.6230 -2.1353 -1.9597 38 1 2.7253 -5.2859 -0.1598 39 1 3.1643 -4.5009 -1.6958 40 1 3.6751 -3.7807 -0.1503 41 1 -0.4451 -3.6468 -1.3108 42 1 0.7523 -4.4226 -2.3751 43 1 0.2780 -5.2064 -0.8491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816725411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:24 Heat of formation + Delta-G solvation = -86.238285 kcal Electronic energy + Delta-G solvation = -26673.278451 eV Core-core repulsion = 22876.786064 eV Total energy + Delta-G solvation = -3796.492387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67031 -39.57396 -37.93131 -37.34660 -35.60631 -34.17000 -33.81209 -31.22898 -29.99124 -29.19030 -27.94207 -27.06128 -25.14462 -24.90971 -22.89114 -21.66834 -21.11321 -20.42505 -19.33182 -18.19512 -17.05379 -16.93587 -16.56782 -16.08108 -15.58966 -15.37807 -14.88135 -14.34284 -14.23678 -14.14898 -14.10904 -13.89317 -13.50064 -13.06421 -12.86233 -12.81474 -12.70957 -12.58940 -12.47337 -12.18588 -12.13137 -11.82711 -11.77642 -11.39259 -11.27523 -10.96233 -10.84052 -10.56735 -10.46487 -10.44607 -10.29581 -9.62082 -9.38010 -9.00789 -8.64983 -7.87031 -7.76757 -7.31753 -4.54120 1.77391 2.01055 2.64459 2.72011 3.11957 3.16984 3.21118 3.33026 3.41733 3.74333 3.95667 3.97062 4.21485 4.26386 4.41889 4.56008 4.83536 5.05010 5.11379 5.16868 5.21769 5.26631 5.30295 5.31136 5.38838 5.53383 5.55462 5.63539 5.71477 5.91222 5.96863 6.10842 6.43242 6.55802 6.61307 6.71340 6.83520 7.11918 7.26952 7.37520 7.52160 7.59577 7.60298 7.71888 8.03076 8.11278 8.47720 8.59718 8.72618 9.91289 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.002911 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.722589 B = 9615.543252 C = 9912.253334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.600 5.600 3 C 0.572 3.428 4 O -0.541 6.541 5 C -0.100 4.100 6 C -0.245 4.245 7 C -0.088 4.088 8 C -0.203 4.203 9 C 0.090 3.910 10 C -0.520 4.520 11 H 0.079 0.921 12 C 0.044 3.956 13 N -0.785 5.785 14 Si 1.062 2.938 15 H -0.273 1.273 16 H -0.273 1.273 17 H -0.274 1.274 18 C -0.159 4.159 19 C 0.083 3.917 20 H 0.139 0.861 21 C -0.157 4.157 22 C 0.104 3.896 23 C -0.166 4.166 24 C -0.142 4.142 25 O -0.339 6.339 26 C 0.474 3.526 27 O -0.437 6.437 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.299 0.701 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -18.408 -5.206 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.335 5.335 3 C 0.365 3.635 4 O -0.418 6.418 5 C -0.103 4.103 6 C -0.264 4.264 7 C -0.106 4.106 8 C -0.223 4.223 9 C 0.087 3.913 10 C -0.547 4.547 11 H 0.098 0.902 12 C -0.180 4.180 13 N -0.406 5.406 14 Si 0.885 3.115 15 H -0.198 1.198 16 H -0.198 1.198 17 H -0.200 1.200 18 C -0.180 4.180 19 C -0.023 4.023 20 H 0.156 0.844 21 C -0.196 4.196 22 C 0.067 3.933 23 C -0.223 4.223 24 C -0.199 4.199 25 O -0.256 6.256 26 C 0.311 3.689 27 O -0.318 6.318 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.421 -16.795 -4.372 17.522 hybrid contribution 0.399 -1.685 -0.375 1.772 sum -2.022 -18.480 -4.747 19.187 Atomic orbital electron populations 1.22620 0.78862 1.05291 1.01502 1.47497 1.07106 1.03604 1.75265 1.19100 0.86992 0.83709 0.73744 1.90689 1.14107 1.87186 1.49857 1.19188 0.95310 0.91607 1.04172 1.20856 0.95842 0.98513 1.11231 1.20547 0.98086 0.93175 0.98805 1.21271 0.96050 0.98445 1.06523 1.17586 0.91024 0.92375 0.90346 1.20588 1.21761 0.91915 1.20432 0.90248 1.27059 0.90964 1.00943 0.99012 1.70454 1.29366 1.38696 1.02116 0.83687 0.78074 0.74784 0.74951 1.19791 1.19820 1.19957 1.21086 0.98926 0.92885 1.05073 1.22214 1.01698 0.85508 0.92912 0.84365 1.23502 1.05135 0.93102 0.97819 1.23122 0.96565 0.95659 0.77992 1.22268 0.95364 1.00892 1.03809 1.21862 0.97077 1.00941 0.99975 1.87091 1.64532 1.42821 1.31122 1.23384 0.74046 0.81106 0.90386 1.90739 1.48198 1.72479 1.20381 0.92122 0.92692 0.86564 0.87081 0.88557 0.87517 0.88802 0.87739 0.88220 0.87716 0.90798 0.89801 0.91665 0.91106 0.89876 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 7.84 59.85 0.47 1.27 16 2 N -0.60 -9.78 2.83 -175.10 -0.50 -10.27 16 3 C 0.57 11.87 7.45 -12.31 -0.09 11.78 16 4 O -0.54 -12.57 16.09 5.32 0.09 -12.49 16 5 C -0.10 -2.23 5.46 -105.04 -0.57 -2.80 16 6 C -0.25 -4.89 7.44 -38.92 -0.29 -5.18 16 7 C -0.09 -1.85 10.01 -39.72 -0.40 -2.25 16 8 C -0.20 -4.93 8.15 -38.81 -0.32 -5.25 16 9 C 0.09 2.33 5.27 -106.87 -0.56 1.76 16 10 C -0.52 -13.63 8.93 -37.73 -0.34 -13.96 16 11 H 0.08 2.06 8.00 -52.49 -0.42 1.64 16 12 C 0.04 1.08 4.81 -17.34 -0.08 1.00 16 13 N -0.78 -20.19 12.31 55.55 0.68 -19.51 16 14 Si 1.06 21.10 30.03 -169.99 -5.10 16.00 16 15 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 16 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 18 C -0.16 -4.01 9.34 -38.44 -0.36 -4.37 16 19 C 0.08 1.15 3.37 -67.99 -0.23 0.92 16 20 H 0.14 2.06 6.97 -51.93 -0.36 1.70 16 21 C -0.16 -1.43 5.82 -25.01 -0.15 -1.57 16 22 C 0.10 0.85 1.24 -89.69 -0.11 0.74 16 23 C -0.17 -1.10 8.78 37.16 0.33 -0.77 16 24 C -0.14 -0.81 8.92 37.15 0.33 -0.48 16 25 O -0.34 -4.20 10.48 -38.47 -0.40 -4.60 16 26 C 0.47 7.15 6.91 36.31 0.25 7.40 16 27 O -0.44 -8.38 18.00 -18.41 -0.33 -8.71 16 28 H 0.06 0.66 6.93 -51.93 -0.36 0.30 16 29 H 0.05 0.68 7.21 -51.93 -0.37 0.31 16 30 H 0.12 1.79 4.73 -51.93 -0.25 1.55 16 31 H 0.11 1.82 4.76 -52.49 -0.25 1.57 16 32 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.11 2.65 6.64 -52.48 -0.35 2.31 16 34 H 0.30 7.89 7.18 -40.82 -0.29 7.60 16 35 H 0.10 2.69 7.94 -52.49 -0.42 2.27 16 36 H 0.10 0.84 6.66 -51.93 -0.35 0.49 16 37 H 0.10 0.77 7.92 -51.93 -0.41 0.36 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 40 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 41 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 42 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -31.40 352.55 -7.95 -39.35 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.58 Total: 6.68 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.12 Total: -11.76 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.19 Total: -29.78 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.65 Total: -25.80 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.10 Total: 16.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.40 -7.95 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816725411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.889 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds