Wall clock time and date at job start Tue Mar 31 2020 12:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99946 * 2 1 4 4 O 1.21550 * 120.00435 * 183.35323 * 3 2 1 5 5 C 1.47889 * 119.99861 * 3.34707 * 3 2 1 6 6 C 1.39910 * 120.02732 * 328.70056 * 5 3 2 7 7 C 1.38327 * 120.36227 * 179.97438 * 6 5 3 8 8 C 1.37758 * 120.40894 * 359.73950 * 7 6 5 9 9 C 1.40749 * 120.03748 * 0.51807 * 8 7 6 10 10 C 1.41444 * 120.17736 * 179.76547 * 9 8 7 11 11 H 1.07992 * 119.99774 * 155.11519 * 10 9 8 12 12 C 1.39938 * 119.99700 * 335.12097 * 10 9 8 13 13 N 1.30832 * 119.99669 * 329.81572 * 12 10 9 14 14 Si 1.86802 * 120.00072 * 149.54796 * 12 10 9 15 15 H 1.48493 * 109.47270 * 180.27216 * 14 12 10 16 16 H 1.48500 * 109.46742 * 300.27207 * 14 12 10 17 17 H 1.48501 * 109.47105 * 60.26928 * 14 12 10 18 18 C 1.38994 * 120.02387 * 148.67434 * 5 3 2 19 19 C 1.46501 * 120.00411 * 179.97438 * 2 1 3 20 20 H 1.09002 * 110.32966 * 180.70369 * 19 2 1 21 21 C 1.54490 * 110.36603 * 58.46090 * 19 2 1 22 22 C 1.54783 * 102.05221 * 225.87436 * 21 19 2 23 23 C 1.52998 * 110.36075 * 268.01260 * 22 21 19 24 24 C 1.52991 * 110.47012 * 145.52271 * 22 21 19 25 25 O 1.45834 * 104.49039 * 26.73841 * 22 21 19 26 26 C 1.34061 * 109.90779 * 329.46157 * 25 22 21 27 27 O 1.20829 * 125.09241 * 200.80289 * 26 25 22 28 28 H 1.09001 * 109.46709 * 94.99572 * 1 2 3 29 29 H 1.08999 * 109.46658 * 214.98811 * 1 2 3 30 30 H 1.08998 * 109.47010 * 334.99063 * 1 2 3 31 31 H 1.08000 * 119.81956 * 359.97438 * 6 5 3 32 32 H 1.07998 * 119.79662 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.98228 * 180.25575 * 8 7 6 34 34 H 0.96992 * 120.00241 * 352.41705 * 13 12 10 35 35 H 1.08001 * 120.20326 * 0.04722 * 18 5 3 36 36 H 1.08999 * 110.86854 * 343.98743 * 21 19 2 37 37 H 1.09005 * 110.86516 * 107.66104 * 21 19 2 38 38 H 1.08995 * 109.47311 * 176.49228 * 23 22 21 39 39 H 1.09008 * 109.47158 * 296.48658 * 23 22 21 40 40 H 1.08992 * 109.47638 * 56.48667 * 23 22 21 41 41 H 1.09000 * 109.47492 * 303.44962 * 24 22 21 42 42 H 1.09007 * 109.47377 * 63.44961 * 24 22 21 43 43 H 1.08998 * 109.47311 * 183.44657 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3528 1.1682 -0.0616 5 6 1.4013 2.4468 0.0748 6 6 0.1247 2.5530 -0.4878 7 6 -0.5716 3.7464 -0.4214 8 6 -0.0188 4.8424 0.2038 9 6 1.2665 4.7562 0.7708 10 6 1.8390 5.8811 1.4092 11 1 2.5957 5.7446 2.1675 12 6 1.4247 7.1708 1.0581 13 7 1.0108 7.4164 -0.1585 14 14 1.4556 8.5400 2.3285 15 1 0.9656 9.7987 1.7117 16 1 0.5799 8.1749 3.4710 17 1 2.8458 8.7345 2.8129 18 6 1.9755 3.5448 0.7045 19 6 2.1976 -1.2687 0.0006 20 1 3.2720 -1.0855 0.0130 21 6 1.8104 -2.1137 -1.2334 22 6 1.5876 -3.5128 -0.6101 23 6 2.8810 -4.3287 -0.6573 24 6 0.4623 -4.2501 -1.3386 25 8 1.2074 -3.2406 0.7712 26 6 1.7928 -2.1101 1.1915 27 8 1.9701 -1.8080 2.3479 28 1 -0.3633 -0.0895 -1.0238 29 1 -0.3632 -0.8419 0.5893 30 1 -0.3633 0.9313 0.4345 31 1 -0.3196 1.6986 -0.9767 32 1 -1.5563 3.8183 -0.8592 33 1 -0.5703 5.7696 0.2553 34 1 1.0936 6.7367 -0.8454 35 1 2.9609 3.4675 1.1399 36 1 0.8924 -1.7402 -1.6873 37 1 2.6230 -2.1353 -1.9597 38 1 2.7253 -5.2859 -0.1598 39 1 3.1643 -4.5009 -1.6958 40 1 3.6751 -3.7807 -0.1503 41 1 -0.4451 -3.6468 -1.3108 42 1 0.7523 -4.4226 -2.3751 43 1 0.2780 -5.2064 -0.8491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816725411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:24 Heat of formation + Delta-G solvation = -104.461815 kcal Electronic energy + Delta-G solvation = -26674.068682 eV Core-core repulsion = 22876.786064 eV Total energy + Delta-G solvation = -3797.282619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74122 -41.10839 -39.14065 -39.10465 -37.02953 -35.87198 -34.72391 -32.52947 -31.82275 -30.68319 -28.46239 -28.28226 -26.97193 -25.94275 -24.37635 -22.92094 -22.72417 -21.66096 -20.73109 -19.86708 -18.36003 -18.17575 -17.74871 -17.37839 -17.10266 -16.68964 -16.39355 -15.86133 -15.68349 -15.44328 -15.15758 -14.90436 -14.78158 -14.44232 -14.28165 -14.25162 -13.85409 -13.65390 -13.42087 -13.38773 -13.13219 -13.08816 -12.76942 -12.63726 -12.60573 -12.23976 -12.09335 -11.99506 -11.91408 -11.78866 -11.61488 -11.40827 -11.07183 -10.82383 -9.99356 -9.69023 -9.61297 -9.24929 -6.52073 0.22422 0.57039 0.82932 1.48800 1.53219 1.58954 1.78941 1.84240 2.09649 2.30164 2.57234 2.68099 3.11707 3.41381 3.47289 3.52942 3.64715 3.92895 3.98213 4.05268 4.25894 4.40935 4.48742 4.54937 4.66372 4.70769 4.72157 4.75570 4.81012 4.85956 4.88320 4.91195 4.99864 5.16514 5.18130 5.25968 5.28933 5.59605 5.62247 5.63519 5.70364 5.79545 5.95312 6.13784 6.17282 6.26938 6.68852 6.79723 6.89866 7.94963 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.002911 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.722589 B = 9615.543252 C = 9912.253334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.590 5.590 3 C 0.567 3.433 4 O -0.578 6.578 5 C -0.107 4.107 6 C -0.211 4.211 7 C -0.086 4.086 8 C -0.213 4.213 9 C 0.066 3.934 10 C -0.566 4.566 11 H 0.063 0.937 12 C 0.013 3.987 13 N -0.802 5.802 14 Si 1.113 2.887 15 H -0.265 1.265 16 H -0.263 1.263 17 H -0.263 1.263 18 C -0.195 4.195 19 C 0.077 3.923 20 H 0.122 0.878 21 C -0.143 4.143 22 C 0.099 3.901 23 C -0.168 4.168 24 C -0.139 4.139 25 O -0.342 6.342 26 C 0.480 3.520 27 O -0.492 6.492 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.284 0.716 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 -20.979 -7.540 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.323 5.323 3 C 0.359 3.641 4 O -0.459 6.459 5 C -0.110 4.110 6 C -0.230 4.230 7 C -0.104 4.104 8 C -0.233 4.233 9 C 0.064 3.936 10 C -0.593 4.593 11 H 0.082 0.918 12 C -0.204 4.204 13 N -0.424 5.424 14 Si 0.929 3.071 15 H -0.189 1.189 16 H -0.188 1.188 17 H -0.187 1.187 18 C -0.216 4.216 19 C -0.029 4.029 20 H 0.139 0.861 21 C -0.181 4.181 22 C 0.063 3.937 23 C -0.225 4.225 24 C -0.196 4.196 25 O -0.259 6.259 26 C 0.319 3.681 27 O -0.377 6.377 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.180 0.820 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.834 -19.441 -6.745 21.138 hybrid contribution 1.070 -1.230 0.254 1.650 sum -3.764 -20.671 -6.491 21.990 Atomic orbital electron populations 1.22838 0.76817 1.05044 1.04362 1.47462 1.08374 1.03163 1.73323 1.18882 0.86516 0.84569 0.74133 1.90667 1.15562 1.87826 1.51811 1.19481 0.96438 0.91775 1.03284 1.21452 0.93977 0.99519 1.08015 1.21016 0.99742 0.92165 0.97448 1.21338 0.95430 0.99342 1.07151 1.17844 0.92085 0.92633 0.91058 1.20717 1.23410 0.93375 1.21818 0.91841 1.28365 0.89553 1.02590 0.99926 1.70571 1.31578 1.37948 1.02294 0.83070 0.78864 0.72243 0.72883 1.18914 1.18796 1.18747 1.21022 0.98553 0.94477 1.07533 1.22442 1.00686 0.84742 0.95017 0.86063 1.23590 1.06763 0.92009 0.95766 1.23605 0.98547 0.95716 0.75848 1.22352 0.94005 1.00490 1.05692 1.21942 0.95947 1.00584 1.01080 1.87101 1.63651 1.41354 1.33798 1.23540 0.72973 0.81748 0.89825 1.90710 1.50566 1.73862 1.22513 0.87675 0.91207 0.88325 0.82044 0.84303 0.88596 0.90463 0.90421 0.86395 0.85412 0.90392 0.86736 0.93299 0.90870 0.86988 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 7.84 127.77 1.00 2.15 16 2 N -0.59 -18.12 2.83 -826.18 -2.34 -20.46 16 3 C 0.57 23.54 7.45 86.80 0.65 24.19 16 4 O -0.58 -27.81 16.09 -3.87 -0.06 -27.87 16 5 C -0.11 -4.79 5.46 -20.14 -0.11 -4.90 16 6 C -0.21 -7.81 7.44 22.70 0.17 -7.64 16 7 C -0.09 -3.41 10.01 22.18 0.22 -3.19 16 8 C -0.21 -10.46 8.15 22.77 0.19 -10.28 16 9 C 0.07 3.62 5.27 -21.32 -0.11 3.51 16 10 C -0.57 -31.65 8.93 23.47 0.21 -31.44 16 11 H 0.06 3.59 8.00 -2.91 -0.02 3.57 16 12 C 0.01 0.70 4.81 85.25 0.41 1.11 16 13 N -0.80 -42.75 12.31 21.83 0.27 -42.48 16 14 Si 1.11 43.65 30.03 68.60 2.06 45.71 16 15 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 18 C -0.20 -10.42 9.34 23.01 0.21 -10.20 16 19 C 0.08 2.01 3.37 44.95 0.15 2.16 16 20 H 0.12 3.63 6.97 -2.39 -0.02 3.62 16 21 C -0.14 -2.01 5.82 31.71 0.18 -1.83 16 22 C 0.10 1.26 1.24 -10.19 -0.01 1.25 16 23 C -0.17 -1.69 8.78 71.98 0.63 -1.06 16 24 C -0.14 -0.90 8.92 71.98 0.64 -0.25 16 25 O -0.34 -7.76 10.48 -50.13 -0.53 -8.28 16 26 C 0.48 14.17 6.91 71.44 0.49 14.66 16 27 O -0.49 -19.37 18.00 21.63 0.39 -18.98 16 28 H 0.11 1.57 6.93 -2.39 -0.02 1.56 16 29 H 0.07 1.47 7.21 -2.39 -0.02 1.45 16 30 H 0.10 2.67 4.73 -2.39 -0.01 2.66 16 31 H 0.16 4.35 4.76 -2.91 -0.01 4.34 16 32 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.10 4.88 6.64 -2.91 -0.02 4.86 16 34 H 0.28 15.67 7.18 -92.71 -0.67 15.01 16 35 H 0.08 4.41 7.94 -2.91 -0.02 4.39 16 36 H 0.12 1.28 6.66 -2.39 -0.02 1.26 16 37 H 0.13 1.29 7.92 -2.38 -0.02 1.27 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.05 0.66 8.08 -2.39 -0.02 0.64 16 41 H 0.07 0.48 8.13 -2.39 -0.02 0.46 16 42 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -76.15 352.55 5.86 -70.29 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 1.14 Total: 23.82 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 4.93 Total: -21.75 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -2.07 Total: -62.94 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -0.20 Total: -55.13 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.06 Total: 45.71 kcal Total: -76.15 5.86 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816725411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.167 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds