Wall clock time and date at job start Tue Mar 31 2020 12:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34770 * 119.99936 * 2 1 4 4 O 1.21545 * 120.00079 * 186.60602 * 3 2 1 5 5 C 1.47892 * 120.00143 * 6.60756 * 3 2 1 6 6 C 1.39915 * 120.02473 * 213.93589 * 5 3 2 7 7 C 1.38333 * 120.35568 * 179.73664 * 6 5 3 8 8 C 1.37752 * 120.40956 * 0.56510 * 7 6 5 9 9 C 1.40743 * 120.04442 * 359.69406 * 8 7 6 10 10 C 1.41436 * 120.17988 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99839 * 212.31062 * 10 9 8 12 12 C 1.39931 * 119.99948 * 32.31530 * 10 9 8 13 13 N 1.30828 * 120.00417 * 7.03960 * 12 10 9 14 14 Si 1.86801 * 119.99992 * 187.04242 * 12 10 9 15 15 H 1.48499 * 109.47283 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.46989 * 119.99845 * 14 12 10 17 17 H 1.48500 * 109.47121 * 239.99635 * 14 12 10 18 18 C 1.38996 * 120.02434 * 34.21382 * 5 3 2 19 19 C 1.46502 * 119.99847 * 180.02562 * 2 1 3 20 20 H 1.08998 * 110.62512 * 169.80784 * 19 2 1 21 21 C 1.54713 * 110.70916 * 292.91588 * 19 2 1 22 22 C 1.54268 * 102.25888 * 93.34883 * 21 19 2 23 23 C 1.53003 * 110.02580 * 255.89568 * 22 21 19 24 24 C 1.52996 * 110.06294 * 134.50888 * 22 21 19 25 25 O 1.45368 * 106.62956 * 15.19140 * 22 21 19 26 26 C 1.34007 * 111.49449 * 2.27043 * 25 22 21 27 27 O 1.20820 * 125.69432 * 160.31356 * 26 25 22 28 28 H 1.08999 * 109.46478 * 275.45685 * 1 2 3 29 29 H 1.08999 * 109.47147 * 35.45993 * 1 2 3 30 30 H 1.09003 * 109.46938 * 155.46423 * 1 2 3 31 31 H 1.08002 * 119.82462 * 0.02562 * 6 5 3 32 32 H 1.07999 * 119.79039 * 180.25863 * 7 6 5 33 33 H 1.08001 * 119.97980 * 179.71669 * 8 7 6 34 34 H 0.96996 * 120.00854 * 180.02562 * 13 12 10 35 35 H 1.08004 * 120.20198 * 359.95086 * 18 5 3 36 36 H 1.08999 * 110.84609 * 335.15862 * 21 19 2 37 37 H 1.09006 * 110.84791 * 211.54181 * 21 19 2 38 38 H 1.08996 * 109.46777 * 176.16985 * 23 22 21 39 39 H 1.08998 * 109.47218 * 296.17311 * 23 22 21 40 40 H 1.09007 * 109.47026 * 56.17415 * 23 22 21 41 41 H 1.09004 * 109.47124 * 301.32070 * 24 22 21 42 42 H 1.09000 * 109.47675 * 61.32483 * 24 22 21 43 43 H 1.08999 * 109.47296 * 181.32576 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3483 1.1707 -0.1211 5 6 1.4068 2.4437 0.1474 6 6 1.8604 3.5911 -0.5125 7 6 1.1778 4.7874 -0.3838 8 6 0.0508 4.8659 0.4044 9 6 -0.4174 3.7235 1.0801 10 6 -1.5740 3.8009 1.8905 11 1 -1.6597 3.1799 2.7699 12 6 -2.6072 4.6821 1.5528 13 7 -2.5679 5.3323 0.4182 14 14 -4.0428 4.9301 2.7220 15 1 -3.8510 4.0847 3.9277 16 1 -4.1127 6.3580 3.1240 17 1 -5.3062 4.5445 2.0435 18 6 0.2710 2.5058 0.9461 19 6 2.1975 -1.2688 -0.0006 20 1 3.2590 -1.0992 -0.1810 21 6 1.9831 -2.0249 1.3320 22 6 0.7889 -2.9430 0.9992 23 6 -0.4893 -2.3908 1.6334 24 6 1.0574 -4.3597 1.5109 25 8 0.6623 -2.9524 -0.4490 26 6 1.6242 -2.2229 -1.0306 27 8 1.9762 -2.3110 -2.1830 28 1 -0.3632 0.0977 1.0230 29 1 -0.3633 0.8370 -0.5962 30 1 -0.3633 -0.9349 -0.4268 31 1 2.7455 3.5414 -1.1293 32 1 1.5337 5.6665 -0.9005 33 1 -0.4741 5.8045 0.5035 34 1 -3.2839 5.9434 0.1842 35 1 -0.0806 1.6235 1.4603 36 1 1.7281 -1.3324 2.1343 37 1 2.8639 -2.6126 1.5907 38 1 -1.3377 -3.0075 1.3368 39 1 -0.3917 -2.4048 2.7189 40 1 -0.6491 -1.3666 1.2961 41 1 1.9684 -4.7449 1.0529 42 1 1.1763 -4.3383 2.5942 43 1 0.2187 -5.0052 1.2502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816725412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:27 Heat of formation + Delta-G solvation = -78.331679 kcal Electronic energy + Delta-G solvation = -27237.530814 eV Core-core repulsion = 23441.381283 eV Total energy + Delta-G solvation = -3796.149531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74311 -39.40381 -37.94086 -37.18108 -35.45243 -33.85709 -33.68518 -31.47718 -30.00075 -29.35933 -28.13721 -26.33577 -25.36808 -24.86681 -22.87963 -21.65680 -20.93313 -20.34944 -19.48037 -17.66714 -17.09384 -16.82447 -16.13296 -15.92776 -15.59814 -15.52185 -14.93547 -14.80127 -14.30565 -14.08153 -13.99728 -13.52946 -13.16140 -13.13572 -12.92267 -12.85895 -12.59292 -12.43406 -12.31994 -12.06284 -11.79089 -11.72891 -11.58030 -11.29059 -11.14389 -11.03811 -10.75391 -10.64030 -10.55088 -10.46993 -10.29564 -9.60349 -9.35546 -9.27610 -8.56292 -7.71530 -7.53405 -6.80940 -4.54422 1.75867 2.09665 2.65318 2.81758 3.01908 3.04525 3.05874 3.26559 3.45258 3.76078 3.86331 4.04357 4.32069 4.44532 4.54655 4.68803 4.99003 5.16372 5.21566 5.27840 5.36673 5.41392 5.45263 5.46759 5.51478 5.61843 5.65216 5.76985 5.88920 6.06322 6.14756 6.29338 6.49769 6.67124 6.67618 6.82324 6.90419 7.10058 7.21807 7.30921 7.45902 7.59499 7.80095 7.85321 8.01230 8.42787 8.50156 8.73169 8.75567 10.14428 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.004136 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.383316 B = 6768.723243 C = 8056.624476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.601 5.601 3 C 0.575 3.425 4 O -0.544 6.544 5 C -0.120 4.120 6 C -0.168 4.168 7 C -0.118 4.118 8 C -0.124 4.124 9 C 0.100 3.900 10 C -0.467 4.467 11 H 0.078 0.922 12 C 0.074 3.926 13 N -0.807 5.807 14 Si 0.911 3.089 15 H -0.262 1.262 16 H -0.273 1.273 17 H -0.274 1.274 18 C -0.186 4.186 19 C 0.083 3.917 20 H 0.138 0.862 21 C -0.161 4.161 22 C 0.106 3.894 23 C -0.184 4.184 24 C -0.153 4.153 25 O -0.339 6.339 26 C 0.482 3.518 27 O -0.441 6.441 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.280 0.720 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.503 -12.938 4.708 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.337 5.337 3 C 0.368 3.632 4 O -0.422 6.422 5 C -0.123 4.123 6 C -0.188 4.188 7 C -0.137 4.137 8 C -0.144 4.144 9 C 0.098 3.902 10 C -0.498 4.498 11 H 0.096 0.904 12 C -0.142 4.142 13 N -0.434 5.434 14 Si 0.736 3.264 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.200 1.200 18 C -0.206 4.206 19 C -0.024 4.024 20 H 0.156 0.844 21 C -0.200 4.200 22 C 0.070 3.930 23 C -0.240 4.240 24 C -0.210 4.210 25 O -0.257 6.257 26 C 0.319 3.681 27 O -0.321 6.321 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.995 -12.940 3.842 13.645 hybrid contribution -0.779 0.183 0.443 0.915 sum 1.216 -12.757 4.285 13.512 Atomic orbital electron populations 1.22640 0.78549 1.03702 1.02870 1.47526 1.07175 1.03529 1.75425 1.19096 0.86867 0.83574 0.73704 1.90679 1.14525 1.87154 1.49804 1.19162 0.97870 0.91311 1.03978 1.20453 1.01124 0.92375 1.04854 1.20717 0.96726 0.96111 1.00100 1.21627 0.94639 0.99316 0.98803 1.17555 0.91586 0.89798 0.91249 1.19512 1.00390 1.20079 1.09776 0.90387 1.25841 0.99675 0.93754 0.94942 1.69745 1.32289 1.21530 1.19823 0.86211 0.80327 0.79023 0.80848 1.18534 1.19839 1.19982 1.21551 0.97245 0.97952 1.03846 1.22323 1.01192 0.85092 0.93778 0.84446 1.23534 0.98710 0.99165 0.98576 1.22920 0.97136 0.97060 0.75925 1.22680 0.95685 1.04380 1.01279 1.22105 1.03031 0.94092 1.01753 1.86831 1.48487 1.67623 1.22710 1.23345 0.76912 0.79640 0.88165 1.90722 1.56811 1.67334 1.17264 0.90450 0.89015 0.91241 0.88286 0.88438 0.85860 0.90895 0.87406 0.87349 0.88209 0.91044 0.90111 0.88956 0.91710 0.90017 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 6.53 59.85 0.39 1.33 16 2 N -0.60 -9.77 2.84 -174.77 -0.50 -10.27 16 3 C 0.57 11.50 7.37 -12.31 -0.09 11.41 16 4 O -0.54 -12.05 16.19 5.33 0.09 -11.96 16 5 C -0.12 -2.59 5.19 -105.04 -0.55 -3.14 16 6 C -0.17 -3.72 9.61 -38.92 -0.37 -4.10 16 7 C -0.12 -2.62 10.01 -39.72 -0.40 -3.02 16 8 C -0.12 -2.99 8.63 -38.81 -0.34 -3.32 16 9 C 0.10 2.41 5.52 -106.87 -0.59 1.82 16 10 C -0.47 -11.20 9.05 -37.73 -0.34 -11.54 16 11 H 0.08 1.78 7.86 -52.49 -0.41 1.37 16 12 C 0.07 1.72 5.30 -17.35 -0.09 1.63 16 13 N -0.81 -19.55 10.89 55.55 0.60 -18.95 16 14 Si 0.91 17.47 29.57 -169.99 -5.03 12.45 16 15 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 C -0.19 -4.01 7.58 -38.44 -0.29 -4.30 16 19 C 0.08 1.16 3.48 -67.71 -0.24 0.93 16 20 H 0.14 2.06 7.03 -51.93 -0.37 1.70 16 21 C -0.16 -1.59 5.81 -25.17 -0.15 -1.73 16 22 C 0.11 1.00 1.11 -89.96 -0.10 0.90 16 23 C -0.18 -1.58 8.29 37.16 0.31 -1.27 16 24 C -0.15 -1.07 8.76 37.16 0.33 -0.74 16 25 O -0.34 -4.41 9.22 -38.29 -0.35 -4.76 16 26 C 0.48 7.30 7.27 36.48 0.27 7.56 16 27 O -0.44 -8.16 18.00 -18.37 -0.33 -8.49 16 28 H 0.08 1.03 4.56 -51.93 -0.24 0.79 16 29 H 0.09 1.55 6.59 -51.93 -0.34 1.20 16 30 H 0.07 0.93 4.92 -51.93 -0.26 0.67 16 31 H 0.10 2.12 7.97 -52.49 -0.42 1.70 16 32 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.12 3.07 6.35 -52.49 -0.33 2.74 16 34 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 35 H 0.11 2.06 5.14 -52.48 -0.27 1.79 16 36 H 0.11 1.05 7.72 -51.93 -0.40 0.65 16 37 H 0.10 0.76 7.80 -51.93 -0.40 0.36 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.92 3.08 -51.93 -0.16 0.76 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -29.24 343.60 -7.86 -37.10 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.27 Total: 7.30 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.25 Total: -7.58 kcal Atomic # 7 Polarization: -29.33 SS G_CDS: 0.11 Total: -29.22 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.60 Total: -25.22 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.24 -7.86 -37.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816725412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.233 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds