Wall clock time and date at job start Tue Mar 31 2020 12:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34770 * 119.99936 * 2 1 4 4 O 1.21545 * 120.00079 * 186.60602 * 3 2 1 5 5 C 1.47892 * 120.00143 * 6.60756 * 3 2 1 6 6 C 1.39915 * 120.02473 * 213.93589 * 5 3 2 7 7 C 1.38333 * 120.35568 * 179.73664 * 6 5 3 8 8 C 1.37752 * 120.40956 * 0.56510 * 7 6 5 9 9 C 1.40743 * 120.04442 * 359.69406 * 8 7 6 10 10 C 1.41436 * 120.17988 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99839 * 212.31062 * 10 9 8 12 12 C 1.39931 * 119.99948 * 32.31530 * 10 9 8 13 13 N 1.30828 * 120.00417 * 7.03960 * 12 10 9 14 14 Si 1.86801 * 119.99992 * 187.04242 * 12 10 9 15 15 H 1.48499 * 109.47283 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.46989 * 119.99845 * 14 12 10 17 17 H 1.48500 * 109.47121 * 239.99635 * 14 12 10 18 18 C 1.38996 * 120.02434 * 34.21382 * 5 3 2 19 19 C 1.46502 * 119.99847 * 180.02562 * 2 1 3 20 20 H 1.08998 * 110.62512 * 169.80784 * 19 2 1 21 21 C 1.54713 * 110.70916 * 292.91588 * 19 2 1 22 22 C 1.54268 * 102.25888 * 93.34883 * 21 19 2 23 23 C 1.53003 * 110.02580 * 255.89568 * 22 21 19 24 24 C 1.52996 * 110.06294 * 134.50888 * 22 21 19 25 25 O 1.45368 * 106.62956 * 15.19140 * 22 21 19 26 26 C 1.34007 * 111.49449 * 2.27043 * 25 22 21 27 27 O 1.20820 * 125.69432 * 160.31356 * 26 25 22 28 28 H 1.08999 * 109.46478 * 275.45685 * 1 2 3 29 29 H 1.08999 * 109.47147 * 35.45993 * 1 2 3 30 30 H 1.09003 * 109.46938 * 155.46423 * 1 2 3 31 31 H 1.08002 * 119.82462 * 0.02562 * 6 5 3 32 32 H 1.07999 * 119.79039 * 180.25863 * 7 6 5 33 33 H 1.08001 * 119.97980 * 179.71669 * 8 7 6 34 34 H 0.96996 * 120.00854 * 180.02562 * 13 12 10 35 35 H 1.08004 * 120.20198 * 359.95086 * 18 5 3 36 36 H 1.08999 * 110.84609 * 335.15862 * 21 19 2 37 37 H 1.09006 * 110.84791 * 211.54181 * 21 19 2 38 38 H 1.08996 * 109.46777 * 176.16985 * 23 22 21 39 39 H 1.08998 * 109.47218 * 296.17311 * 23 22 21 40 40 H 1.09007 * 109.47026 * 56.17415 * 23 22 21 41 41 H 1.09004 * 109.47124 * 301.32070 * 24 22 21 42 42 H 1.09000 * 109.47675 * 61.32483 * 24 22 21 43 43 H 1.08999 * 109.47296 * 181.32576 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3483 1.1707 -0.1211 5 6 1.4068 2.4437 0.1474 6 6 1.8604 3.5911 -0.5125 7 6 1.1778 4.7874 -0.3838 8 6 0.0508 4.8659 0.4044 9 6 -0.4174 3.7235 1.0801 10 6 -1.5740 3.8009 1.8905 11 1 -1.6597 3.1799 2.7699 12 6 -2.6072 4.6821 1.5528 13 7 -2.5679 5.3323 0.4182 14 14 -4.0428 4.9301 2.7220 15 1 -3.8510 4.0847 3.9277 16 1 -4.1127 6.3580 3.1240 17 1 -5.3062 4.5445 2.0435 18 6 0.2710 2.5058 0.9461 19 6 2.1975 -1.2688 -0.0006 20 1 3.2590 -1.0992 -0.1810 21 6 1.9831 -2.0249 1.3320 22 6 0.7889 -2.9430 0.9992 23 6 -0.4893 -2.3908 1.6334 24 6 1.0574 -4.3597 1.5109 25 8 0.6623 -2.9524 -0.4490 26 6 1.6242 -2.2229 -1.0306 27 8 1.9762 -2.3110 -2.1830 28 1 -0.3632 0.0977 1.0230 29 1 -0.3633 0.8370 -0.5962 30 1 -0.3633 -0.9349 -0.4268 31 1 2.7455 3.5414 -1.1293 32 1 1.5337 5.6665 -0.9005 33 1 -0.4741 5.8045 0.5035 34 1 -3.2839 5.9434 0.1842 35 1 -0.0806 1.6235 1.4603 36 1 1.7281 -1.3324 2.1343 37 1 2.8639 -2.6126 1.5907 38 1 -1.3377 -3.0075 1.3368 39 1 -0.3917 -2.4048 2.7189 40 1 -0.6491 -1.3666 1.2961 41 1 1.9684 -4.7449 1.0529 42 1 1.1763 -4.3383 2.5942 43 1 0.2187 -5.0052 1.2502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816725412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:27 Heat of formation + Delta-G solvation = -93.559037 kcal Electronic energy + Delta-G solvation = -27238.191122 eV Core-core repulsion = 23441.381283 eV Total energy + Delta-G solvation = -3796.809839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.84376 -40.92068 -39.13948 -38.88937 -36.82636 -35.47485 -34.70984 -32.72722 -31.77903 -30.85078 -28.97610 -27.46342 -27.10729 -25.88433 -24.33239 -22.87975 -22.60118 -21.49494 -20.89264 -19.22297 -18.47102 -17.99607 -17.56571 -17.26727 -17.13000 -16.66266 -16.54673 -16.13663 -15.49621 -15.25368 -15.10732 -14.94887 -14.67200 -14.44663 -14.26168 -13.92624 -13.84415 -13.50273 -13.37224 -13.31173 -13.01784 -12.84520 -12.77304 -12.61218 -12.49304 -12.47886 -12.23919 -12.00721 -11.88954 -11.68758 -11.38560 -11.30556 -11.08367 -10.90192 -9.90304 -9.46341 -9.33555 -8.54892 -6.37149 0.38892 0.54391 0.93040 1.45933 1.49707 1.59148 1.68848 1.87739 2.06773 2.26221 2.64426 2.79893 3.14022 3.50544 3.58830 3.65508 3.72170 3.95686 3.99895 4.20318 4.24719 4.45512 4.55753 4.59159 4.67539 4.71467 4.77017 4.83841 4.86281 4.93564 4.99661 5.01314 5.11937 5.21598 5.25026 5.34771 5.38037 5.51651 5.70843 5.75281 5.92245 6.05246 6.08005 6.16811 6.21852 6.62775 6.92115 6.95294 6.97087 8.42322 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.004136 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.383316 B = 6768.723243 C = 8056.624476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.592 5.592 3 C 0.574 3.426 4 O -0.571 6.571 5 C -0.125 4.125 6 C -0.183 4.183 7 C -0.117 4.117 8 C -0.149 4.149 9 C 0.075 3.925 10 C -0.490 4.490 11 H 0.086 0.914 12 C 0.034 3.966 13 N -0.839 5.839 14 Si 0.981 3.019 15 H -0.253 1.253 16 H -0.273 1.273 17 H -0.271 1.271 18 C -0.176 4.176 19 C 0.077 3.923 20 H 0.126 0.874 21 C -0.149 4.149 22 C 0.100 3.900 23 C -0.184 4.184 24 C -0.150 4.150 25 O -0.344 6.344 26 C 0.487 3.513 27 O -0.484 6.484 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.285 0.715 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 -14.833 6.912 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.326 5.326 3 C 0.366 3.634 4 O -0.451 6.451 5 C -0.128 4.128 6 C -0.203 4.203 7 C -0.135 4.135 8 C -0.169 4.169 9 C 0.073 3.927 10 C -0.520 4.520 11 H 0.104 0.896 12 C -0.179 4.179 13 N -0.466 5.466 14 Si 0.803 3.197 15 H -0.176 1.176 16 H -0.198 1.198 17 H -0.196 1.196 18 C -0.195 4.195 19 C -0.029 4.029 20 H 0.144 0.856 21 C -0.187 4.187 22 C 0.064 3.936 23 C -0.240 4.240 24 C -0.207 4.207 25 O -0.261 6.261 26 C 0.326 3.674 27 O -0.368 6.368 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.127 0.873 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.041 -14.873 6.071 16.098 hybrid contribution -0.476 0.697 -0.266 0.885 sum 0.565 -14.176 5.805 15.329 Atomic orbital electron populations 1.22730 0.77463 1.03493 1.03840 1.47448 1.07797 1.03482 1.73877 1.18836 0.86439 0.84121 0.73962 1.90663 1.15464 1.87630 1.51358 1.19407 0.97828 0.92160 1.03421 1.20635 1.01476 0.92803 1.05370 1.20896 0.96083 0.96976 0.99584 1.21590 0.95654 0.99050 1.00594 1.17903 0.92330 0.90624 0.91855 1.19792 1.00824 1.21132 1.10264 0.89607 1.26661 1.02041 0.93021 0.96162 1.69825 1.33375 1.22081 1.21352 0.85151 0.76869 0.78839 0.78842 1.17616 1.19772 1.19591 1.21741 0.96579 0.98014 1.03211 1.22510 1.00118 0.84066 0.96181 0.85618 1.23608 1.00175 0.98975 0.95974 1.23339 0.97518 0.98811 0.73900 1.22706 0.95299 1.03278 1.02727 1.22145 1.03164 0.92048 1.03295 1.86840 1.47377 1.66874 1.24995 1.23458 0.76696 0.79588 0.87617 1.90696 1.58412 1.68673 1.19064 0.88379 0.91400 0.89744 0.87920 0.86511 0.87397 0.90428 0.84983 0.86454 0.85418 0.90503 0.87607 0.90514 0.91700 0.87325 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.85 6.53 127.77 0.83 2.68 16 2 N -0.59 -18.71 2.84 -825.13 -2.35 -21.06 16 3 C 0.57 22.85 7.37 86.80 0.64 23.49 16 4 O -0.57 -25.39 16.19 -3.86 -0.06 -25.45 16 5 C -0.13 -5.41 5.19 -20.13 -0.10 -5.51 16 6 C -0.18 -8.22 9.61 22.70 0.22 -8.00 16 7 C -0.12 -5.29 10.01 22.18 0.22 -5.07 16 8 C -0.15 -7.35 8.63 22.77 0.20 -7.16 16 9 C 0.07 3.64 5.52 -21.32 -0.12 3.52 16 10 C -0.49 -23.40 9.05 23.47 0.21 -23.19 16 11 H 0.09 3.83 7.86 -2.91 -0.02 3.81 16 12 C 0.03 1.58 5.30 85.25 0.45 2.04 16 13 N -0.84 -41.16 10.89 21.82 0.24 -40.93 16 14 Si 0.98 35.13 29.57 68.60 2.03 37.16 16 15 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 16 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 17 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 18 C -0.18 -7.52 7.58 23.01 0.17 -7.34 16 19 C 0.08 2.07 3.48 45.14 0.16 2.22 16 20 H 0.13 3.72 7.03 -2.39 -0.02 3.70 16 21 C -0.15 -2.47 5.81 31.61 0.18 -2.28 16 22 C 0.10 1.56 1.11 -10.36 -0.01 1.55 16 23 C -0.18 -2.47 8.29 71.98 0.60 -1.88 16 24 C -0.15 -1.51 8.76 71.98 0.63 -0.88 16 25 O -0.34 -8.31 9.22 -49.65 -0.46 -8.77 16 26 C 0.49 14.41 7.27 71.54 0.52 14.93 16 27 O -0.48 -18.18 18.00 21.62 0.39 -17.79 16 28 H 0.10 2.38 4.56 -2.39 -0.01 2.37 16 29 H 0.07 2.27 6.59 -2.39 -0.02 2.25 16 30 H 0.08 2.13 4.92 -2.39 -0.01 2.12 16 31 H 0.10 4.47 7.97 -2.91 -0.02 4.45 16 32 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.11 5.58 6.35 -2.91 -0.02 5.56 16 34 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 35 H 0.13 4.84 5.14 -2.91 -0.01 4.82 16 36 H 0.12 1.82 7.72 -2.39 -0.02 1.80 16 37 H 0.13 1.45 7.80 -2.38 -0.02 1.43 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.28 3.08 -2.38 -0.01 1.27 16 41 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -64.90 343.60 5.64 -59.25 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 1.05 Total: 28.45 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.80 Total: -10.87 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -2.11 Total: -61.99 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.13 Total: -52.01 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Total: -64.90 5.64 -59.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816725412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.304 kcal (2) G-P(sol) polarization free energy of solvation -64.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds