Wall clock time and date at job start Tue Mar 31 2020 12:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00179 * 2 1 4 4 O 1.21584 * 120.00070 * 183.79481 * 3 2 1 5 5 C 1.47647 * 119.99814 * 3.79630 * 3 2 1 6 6 C 1.40007 * 119.89336 * 148.74775 * 5 3 2 7 7 C 1.36321 * 120.10311 * 179.97438 * 6 5 3 8 8 C 1.40885 * 119.89253 * 0.02562 * 7 6 5 9 9 C 1.41106 * 120.10358 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00308 * 204.46715 * 9 8 7 11 11 C 1.40236 * 120.00041 * 24.46000 * 9 8 7 12 12 N 1.30642 * 119.99917 * 16.32289 * 11 9 8 13 13 Si 1.86795 * 119.99776 * 196.32100 * 11 9 8 14 14 H 1.48505 * 109.47545 * 60.00126 * 13 11 9 15 15 H 1.48503 * 109.46775 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47415 * 299.99822 * 13 11 9 17 17 C 1.40881 * 119.79540 * 0.02562 * 8 7 6 18 18 C 1.36320 * 119.89350 * 359.96285 * 17 8 7 19 19 C 1.46506 * 120.00060 * 180.02562 * 2 1 3 20 20 H 1.09000 * 110.32653 * 179.21860 * 19 2 1 21 21 C 1.54491 * 110.37048 * 56.85500 * 19 2 1 22 22 C 1.54567 * 102.14588 * 225.81978 * 21 19 2 23 23 C 1.52996 * 110.44141 * 268.10799 * 22 21 19 24 24 C 1.53004 * 110.54663 * 145.64196 * 22 21 19 25 25 O 1.45837 * 104.44481 * 26.84849 * 22 21 19 26 26 C 1.34063 * 109.90797 * 329.39582 * 25 22 21 27 27 O 1.20823 * 125.09620 * 200.83115 * 26 25 22 28 28 H 1.08997 * 109.47201 * 94.03659 * 1 2 3 29 29 H 1.09000 * 109.47219 * 214.03264 * 1 2 3 30 30 H 1.08997 * 109.47350 * 334.03554 * 1 2 3 31 31 H 1.07997 * 119.94996 * 359.97438 * 6 5 3 32 32 H 1.08002 * 120.05148 * 179.74782 * 7 6 5 33 33 H 0.96996 * 119.99831 * 180.02562 * 12 11 9 34 34 H 1.08003 * 120.05576 * 180.02562 * 17 8 7 35 35 H 1.07998 * 119.95232 * 180.02562 * 18 17 8 36 36 H 1.09003 * 110.86500 * 343.98520 * 21 19 2 37 37 H 1.09003 * 110.86785 * 107.65432 * 21 19 2 38 38 H 1.08998 * 109.47391 * 176.47779 * 23 22 21 39 39 H 1.09004 * 109.47088 * 296.47952 * 23 22 21 40 40 H 1.09000 * 109.47401 * 56.47403 * 23 22 21 41 41 H 1.09008 * 109.46765 * 303.45918 * 24 22 21 42 42 H 1.08993 * 109.46901 * 63.45816 * 24 22 21 43 43 H 1.08996 * 109.47270 * 183.46560 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3527 1.1683 -0.0697 5 6 1.4031 2.4444 0.0847 6 6 1.9891 3.5466 0.7187 7 6 1.3138 4.7281 0.7988 8 6 0.0240 4.8387 0.2429 9 6 -0.6792 6.0594 0.3238 10 1 -1.7581 6.0653 0.2752 11 6 0.0228 7.2649 0.4674 12 7 1.3029 7.3099 0.2103 13 14 -0.8725 8.8061 1.0262 14 1 -1.4663 8.5749 2.3676 15 1 0.0869 9.9374 1.0974 16 1 -1.9499 9.1316 0.0573 17 6 -0.5619 3.7266 -0.3931 18 6 0.1212 2.5493 -0.4686 19 6 2.1975 -1.2688 -0.0006 20 1 3.2719 -1.0856 -0.0144 21 6 1.7806 -2.1299 -1.2136 22 6 1.5743 -3.5200 -0.5700 23 6 2.8664 -4.3367 -0.6365 24 6 0.4341 -4.2687 -1.2632 25 8 1.2252 -3.2310 0.8161 26 6 1.8198 -2.0955 1.2094 27 8 2.0235 -1.7797 2.3577 28 1 -0.3633 -0.0723 -1.0251 29 1 -0.3634 -0.8516 0.5751 30 1 -0.3634 0.9239 0.4499 31 1 2.9777 3.4607 1.1449 32 1 1.7650 5.5766 1.2917 33 1 1.7885 8.1436 0.3100 34 1 -1.5503 3.8068 -0.8211 35 1 -0.3269 1.6962 -0.9563 36 1 0.8518 -1.7622 -1.6499 37 1 2.5753 -2.1612 -1.9590 38 1 2.7219 -5.2877 -0.1239 39 1 3.1262 -4.5215 -1.6788 40 1 3.6716 -3.7826 -0.1541 41 1 -0.4737 -3.6667 -1.2221 42 1 0.7007 -4.4537 -2.3037 43 1 0.2631 -5.2190 -0.7574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816726455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:30 Heat of formation + Delta-G solvation = -81.707916 kcal Electronic energy + Delta-G solvation = -26593.551795 eV Core-core repulsion = 22797.255859 eV Total energy + Delta-G solvation = -3796.295936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56542 -39.32986 -37.84260 -37.18594 -35.37904 -34.06281 -33.75546 -31.20184 -29.97331 -29.24812 -27.88444 -26.82107 -26.02872 -24.57730 -22.35623 -21.47241 -21.16918 -20.27451 -19.06938 -17.64204 -17.05441 -16.94892 -16.48623 -16.12049 -15.58769 -15.33723 -14.90306 -14.31000 -14.21366 -14.07676 -13.98210 -13.56524 -13.23467 -13.09104 -12.79373 -12.73822 -12.52983 -12.42373 -12.31919 -12.11763 -11.93828 -11.74749 -11.65924 -11.41421 -11.21264 -11.20439 -10.89527 -10.77601 -10.62140 -10.45692 -10.04409 -9.53570 -9.35772 -9.06796 -8.46536 -7.70310 -7.56738 -7.01056 -4.61791 1.88417 2.22668 2.83178 2.90844 2.94740 2.97300 3.00078 3.37636 3.56810 3.74336 3.86927 4.06886 4.29981 4.33972 4.48982 4.64741 4.96718 5.12747 5.19942 5.25971 5.29291 5.36211 5.43950 5.45593 5.52542 5.63426 5.68600 5.74816 5.81505 5.98619 6.04393 6.24307 6.60667 6.66199 6.79497 6.82460 7.01425 7.08261 7.39006 7.41686 7.55377 7.64689 7.83486 7.95817 8.06367 8.41365 8.62100 8.73378 8.81477 9.89960 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032097 B = 0.002797 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.146846 B =10006.802061 C =10245.811011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.605 5.605 3 C 0.579 3.421 4 O -0.560 6.560 5 C -0.280 4.280 6 C -0.037 4.037 7 C -0.179 4.179 8 C 0.127 3.873 9 C -0.442 4.442 10 H 0.084 0.916 11 C 0.073 3.927 12 N -0.770 5.770 13 Si 0.915 3.085 14 H -0.260 1.260 15 H -0.276 1.276 16 H -0.263 1.263 17 C -0.236 4.236 18 C -0.066 4.066 19 C 0.086 3.914 20 H 0.138 0.862 21 C -0.158 4.158 22 C 0.104 3.896 23 C -0.166 4.166 24 C -0.141 4.141 25 O -0.340 6.340 26 C 0.473 3.527 27 O -0.439 6.439 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.288 0.712 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -16.587 -4.858 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.341 5.341 3 C 0.376 3.624 4 O -0.440 6.440 5 C -0.285 4.285 6 C -0.057 4.057 7 C -0.199 4.199 8 C 0.124 3.876 9 C -0.470 4.470 10 H 0.102 0.898 11 C -0.149 4.149 12 N -0.393 5.393 13 Si 0.738 3.262 14 H -0.185 1.185 15 H -0.200 1.200 16 H -0.187 1.187 17 C -0.255 4.255 18 C -0.084 4.084 19 C -0.021 4.021 20 H 0.155 0.845 21 C -0.196 4.196 22 C 0.067 3.933 23 C -0.223 4.223 24 C -0.198 4.198 25 O -0.257 6.257 26 C 0.310 3.690 27 O -0.320 6.320 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.375 -16.391 -4.228 16.983 hybrid contribution -0.297 0.742 0.105 0.806 sum -1.672 -15.649 -4.123 16.269 Atomic orbital electron populations 1.22481 0.79455 1.04630 1.01186 1.47530 1.06707 1.03624 1.76221 1.18866 0.86785 0.83316 0.73432 1.90645 1.14465 1.87215 1.51693 1.18722 0.97743 0.93000 1.19002 1.20413 0.97299 0.91957 0.96012 1.21046 0.97207 0.96550 1.05055 1.17787 0.91663 0.92033 0.86136 1.19813 0.95150 0.90543 1.41487 0.89789 1.26115 0.94854 1.01577 0.92342 1.69732 1.09048 1.29307 1.31228 0.86248 0.80060 0.79322 0.80545 1.18478 1.20032 1.18694 1.20675 1.01177 0.94672 1.08979 1.20901 0.93036 0.97023 0.97480 1.22148 1.01754 0.85751 0.92446 0.84475 1.23460 1.05002 0.93087 0.98069 1.23071 0.96725 0.95661 0.77878 1.22266 0.95470 1.00841 1.03729 1.21862 0.96936 1.00808 1.00236 1.87081 1.65080 1.42505 1.31084 1.23478 0.73896 0.80978 0.90643 1.90724 1.47761 1.71978 1.21541 0.92363 0.92820 0.87220 0.88537 0.85890 0.90096 0.88409 0.87399 0.88281 0.87849 0.90871 0.89859 0.91681 0.91117 0.89927 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 7.76 59.85 0.46 1.38 16 2 N -0.61 -10.27 2.84 -175.19 -0.50 -10.77 16 3 C 0.58 12.39 7.44 -12.42 -0.09 12.30 16 4 O -0.56 -13.39 16.09 5.29 0.09 -13.31 16 5 C -0.28 -6.37 5.50 -104.73 -0.58 -6.94 16 6 C -0.04 -0.92 9.53 -39.61 -0.38 -1.29 16 7 C -0.18 -4.57 8.63 -39.27 -0.34 -4.91 16 8 C 0.13 3.20 5.58 -106.81 -0.60 2.60 16 9 C -0.44 -10.89 9.05 -37.74 -0.34 -11.23 16 10 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 11 C 0.07 1.70 5.17 -17.31 -0.09 1.61 16 12 N -0.77 -18.83 10.85 55.56 0.60 -18.22 16 13 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 14 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 15 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 16 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 17 C -0.24 -5.31 9.73 -39.27 -0.38 -5.69 16 18 C -0.07 -1.36 7.36 -39.61 -0.29 -1.66 16 19 C 0.09 1.24 3.38 -67.99 -0.23 1.01 16 20 H 0.14 2.14 6.97 -51.93 -0.36 1.78 16 21 C -0.16 -1.52 5.80 -25.13 -0.15 -1.66 16 22 C 0.10 0.90 1.24 -89.80 -0.11 0.79 16 23 C -0.17 -1.16 8.77 37.16 0.33 -0.84 16 24 C -0.14 -0.87 8.92 37.16 0.33 -0.54 16 25 O -0.34 -4.39 10.48 -38.47 -0.40 -4.79 16 26 C 0.47 7.40 6.97 36.32 0.25 7.65 16 27 O -0.44 -8.64 18.00 -18.41 -0.33 -8.97 16 28 H 0.06 0.67 6.91 -51.93 -0.36 0.31 16 29 H 0.05 0.69 7.27 -51.93 -0.38 0.31 16 30 H 0.11 1.75 4.76 -51.93 -0.25 1.50 16 31 H 0.10 2.33 7.93 -52.49 -0.42 1.91 16 32 H 0.12 3.21 6.09 -52.49 -0.32 2.89 16 33 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 34 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 35 H 0.11 1.83 4.70 -52.49 -0.25 1.58 16 36 H 0.10 0.89 6.60 -51.93 -0.34 0.55 16 37 H 0.10 0.82 7.92 -51.93 -0.41 0.41 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.07 0.45 8.13 -51.92 -0.42 0.03 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -31.07 352.17 -8.05 -39.12 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.59 Total: 6.74 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.20 Total: -7.42 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: 0.11 Total: -28.99 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.65 Total: -27.07 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.07 -8.05 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816726455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.587 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds