Wall clock time and date at job start Tue Mar 31 2020 12:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00179 * 2 1 4 4 O 1.21584 * 120.00070 * 183.79481 * 3 2 1 5 5 C 1.47647 * 119.99814 * 3.79630 * 3 2 1 6 6 C 1.40007 * 119.89336 * 148.74775 * 5 3 2 7 7 C 1.36321 * 120.10311 * 179.97438 * 6 5 3 8 8 C 1.40885 * 119.89253 * 0.02562 * 7 6 5 9 9 C 1.41106 * 120.10358 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00308 * 204.46715 * 9 8 7 11 11 C 1.40236 * 120.00041 * 24.46000 * 9 8 7 12 12 N 1.30642 * 119.99917 * 16.32289 * 11 9 8 13 13 Si 1.86795 * 119.99776 * 196.32100 * 11 9 8 14 14 H 1.48505 * 109.47545 * 60.00126 * 13 11 9 15 15 H 1.48503 * 109.46775 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47415 * 299.99822 * 13 11 9 17 17 C 1.40881 * 119.79540 * 0.02562 * 8 7 6 18 18 C 1.36320 * 119.89350 * 359.96285 * 17 8 7 19 19 C 1.46506 * 120.00060 * 180.02562 * 2 1 3 20 20 H 1.09000 * 110.32653 * 179.21860 * 19 2 1 21 21 C 1.54491 * 110.37048 * 56.85500 * 19 2 1 22 22 C 1.54567 * 102.14588 * 225.81978 * 21 19 2 23 23 C 1.52996 * 110.44141 * 268.10799 * 22 21 19 24 24 C 1.53004 * 110.54663 * 145.64196 * 22 21 19 25 25 O 1.45837 * 104.44481 * 26.84849 * 22 21 19 26 26 C 1.34063 * 109.90797 * 329.39582 * 25 22 21 27 27 O 1.20823 * 125.09620 * 200.83115 * 26 25 22 28 28 H 1.08997 * 109.47201 * 94.03659 * 1 2 3 29 29 H 1.09000 * 109.47219 * 214.03264 * 1 2 3 30 30 H 1.08997 * 109.47350 * 334.03554 * 1 2 3 31 31 H 1.07997 * 119.94996 * 359.97438 * 6 5 3 32 32 H 1.08002 * 120.05148 * 179.74782 * 7 6 5 33 33 H 0.96996 * 119.99831 * 180.02562 * 12 11 9 34 34 H 1.08003 * 120.05576 * 180.02562 * 17 8 7 35 35 H 1.07998 * 119.95232 * 180.02562 * 18 17 8 36 36 H 1.09003 * 110.86500 * 343.98520 * 21 19 2 37 37 H 1.09003 * 110.86785 * 107.65432 * 21 19 2 38 38 H 1.08998 * 109.47391 * 176.47779 * 23 22 21 39 39 H 1.09004 * 109.47088 * 296.47952 * 23 22 21 40 40 H 1.09000 * 109.47401 * 56.47403 * 23 22 21 41 41 H 1.09008 * 109.46765 * 303.45918 * 24 22 21 42 42 H 1.08993 * 109.46901 * 63.45816 * 24 22 21 43 43 H 1.08996 * 109.47270 * 183.46560 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3527 1.1683 -0.0697 5 6 1.4031 2.4444 0.0847 6 6 1.9891 3.5466 0.7187 7 6 1.3138 4.7281 0.7988 8 6 0.0240 4.8387 0.2429 9 6 -0.6792 6.0594 0.3238 10 1 -1.7581 6.0653 0.2752 11 6 0.0228 7.2649 0.4674 12 7 1.3029 7.3099 0.2103 13 14 -0.8725 8.8061 1.0262 14 1 -1.4663 8.5749 2.3676 15 1 0.0869 9.9374 1.0974 16 1 -1.9499 9.1316 0.0573 17 6 -0.5619 3.7266 -0.3931 18 6 0.1212 2.5493 -0.4686 19 6 2.1975 -1.2688 -0.0006 20 1 3.2719 -1.0856 -0.0144 21 6 1.7806 -2.1299 -1.2136 22 6 1.5743 -3.5200 -0.5700 23 6 2.8664 -4.3367 -0.6365 24 6 0.4341 -4.2687 -1.2632 25 8 1.2252 -3.2310 0.8161 26 6 1.8198 -2.0955 1.2094 27 8 2.0235 -1.7797 2.3577 28 1 -0.3633 -0.0723 -1.0251 29 1 -0.3634 -0.8516 0.5751 30 1 -0.3634 0.9239 0.4499 31 1 2.9777 3.4607 1.1449 32 1 1.7650 5.5766 1.2917 33 1 1.7885 8.1436 0.3100 34 1 -1.5503 3.8068 -0.8211 35 1 -0.3269 1.6962 -0.9563 36 1 0.8518 -1.7622 -1.6499 37 1 2.5753 -2.1612 -1.9590 38 1 2.7219 -5.2877 -0.1239 39 1 3.1262 -4.5215 -1.6788 40 1 3.6716 -3.7826 -0.1541 41 1 -0.4737 -3.6667 -1.2221 42 1 0.7007 -4.4537 -2.3037 43 1 0.2631 -5.2190 -0.7574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816726455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:29 Heat of formation + Delta-G solvation = -99.234692 kcal Electronic energy + Delta-G solvation = -26594.311813 eV Core-core repulsion = 22797.255859 eV Total energy + Delta-G solvation = -3797.055954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.66364 -40.89942 -39.06697 -38.94338 -36.83781 -35.73489 -34.69097 -32.56451 -31.75911 -30.75078 -28.43322 -28.11927 -27.64837 -25.66633 -23.83125 -22.99581 -22.58965 -21.52072 -20.47494 -19.41961 -18.47988 -18.13547 -17.75491 -17.38249 -17.13378 -16.62916 -16.31210 -15.87837 -15.43432 -15.16664 -15.01399 -14.85355 -14.70602 -14.44679 -14.21128 -13.88930 -13.68840 -13.58397 -13.38166 -13.24438 -13.15316 -13.07172 -12.78697 -12.74266 -12.57403 -12.45373 -12.34872 -11.95271 -11.75930 -11.73484 -11.57383 -11.28501 -11.13223 -10.76231 -9.84644 -9.52489 -9.39382 -8.77032 -6.48304 0.45797 0.64671 1.14021 1.37713 1.43330 1.51887 1.71355 1.97992 2.15700 2.19203 2.66655 2.79120 3.18983 3.52831 3.65316 3.66211 3.82266 3.96807 4.04360 4.19076 4.37202 4.43242 4.52111 4.58741 4.69937 4.75168 4.78447 4.83929 4.88907 4.93848 4.97216 5.01347 5.18282 5.19313 5.25236 5.30806 5.34917 5.58609 5.67543 5.76209 5.91345 6.00639 6.16375 6.19898 6.33012 6.56314 6.77424 6.89708 7.17176 8.16876 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032097 B = 0.002797 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.146846 B =10006.802061 C =10245.811011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.598 5.598 3 C 0.576 3.424 4 O -0.596 6.596 5 C -0.291 4.291 6 C -0.054 4.054 7 C -0.202 4.202 8 C 0.100 3.900 9 C -0.471 4.471 10 H 0.094 0.906 11 C 0.032 3.968 12 N -0.806 5.806 13 Si 0.989 3.011 14 H -0.259 1.259 15 H -0.270 1.270 16 H -0.252 1.252 17 C -0.244 4.244 18 C -0.049 4.049 19 C 0.080 3.920 20 H 0.120 0.880 21 C -0.144 4.144 22 C 0.099 3.901 23 C -0.168 4.168 24 C -0.139 4.139 25 O -0.344 6.344 26 C 0.479 3.521 27 O -0.493 6.493 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.294 0.706 34 H 0.120 0.880 35 H 0.154 0.846 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 -18.496 -7.065 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.332 5.332 3 C 0.372 3.628 4 O -0.479 6.479 5 C -0.296 4.296 6 C -0.074 4.074 7 C -0.221 4.221 8 C 0.097 3.903 9 C -0.498 4.498 10 H 0.112 0.888 11 C -0.187 4.187 12 N -0.430 5.430 13 Si 0.809 3.191 14 H -0.183 1.183 15 H -0.194 1.194 16 H -0.176 1.176 17 C -0.264 4.264 18 C -0.067 4.067 19 C -0.026 4.026 20 H 0.138 0.862 21 C -0.182 4.182 22 C 0.063 3.937 23 C -0.225 4.225 24 C -0.195 4.195 25 O -0.261 6.261 26 C 0.318 3.682 27 O -0.378 6.378 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.138 0.862 35 H 0.172 0.828 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.623 -18.369 -6.471 19.809 hybrid contribution 0.420 1.137 0.759 1.430 sum -3.203 -17.231 -5.712 18.434 Atomic orbital electron populations 1.22681 0.77448 1.04432 1.03832 1.47450 1.07971 1.03281 1.74491 1.18684 0.86290 0.84267 0.73559 1.90620 1.15879 1.87939 1.53503 1.18994 0.98769 0.93260 1.18550 1.20478 0.97078 0.92847 0.96977 1.20957 0.98231 0.96372 1.06548 1.18158 0.91709 0.93628 0.86853 1.20149 0.95777 0.91160 1.42725 0.88797 1.27041 0.95418 1.04615 0.91602 1.69801 1.10656 1.30536 1.31973 0.85132 0.78873 0.75089 0.80016 1.18282 1.19412 1.17555 1.20976 1.02247 0.94463 1.08672 1.21288 0.91715 0.97803 0.95904 1.22361 1.00740 0.85063 0.94461 0.86205 1.23537 1.06488 0.92024 0.96179 1.23557 0.98833 0.95680 0.75650 1.22347 0.94003 1.00435 1.05680 1.21941 0.95695 1.00442 1.01461 1.87089 1.64155 1.41018 1.33835 1.23627 0.72846 0.81616 0.90083 1.90694 1.50125 1.73358 1.23605 0.88236 0.91283 0.88976 0.89748 0.87737 0.89463 0.86155 0.82845 0.86619 0.85526 0.90396 0.86766 0.93303 0.90982 0.87011 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.43 7.76 127.77 0.99 2.42 16 2 N -0.60 -19.48 2.84 -826.43 -2.34 -21.82 16 3 C 0.58 24.79 7.44 86.73 0.65 25.43 16 4 O -0.60 -29.37 16.09 -3.98 -0.06 -29.43 16 5 C -0.29 -13.40 5.50 -19.93 -0.11 -13.51 16 6 C -0.05 -2.81 9.53 22.25 0.21 -2.60 16 7 C -0.20 -10.84 8.63 22.47 0.19 -10.65 16 8 C 0.10 5.14 5.58 -21.28 -0.12 5.02 16 9 C -0.47 -23.52 9.05 23.46 0.21 -23.31 16 10 H 0.09 4.34 7.90 -2.91 -0.02 4.31 16 11 C 0.03 1.50 5.17 85.36 0.44 1.94 16 12 N -0.81 -40.75 10.85 21.87 0.24 -40.52 16 13 Si 0.99 35.50 29.59 68.60 2.03 37.53 16 14 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 15 H -0.27 -9.31 7.11 99.48 0.71 -8.61 16 16 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 17 C -0.24 -10.83 9.73 22.47 0.22 -10.61 16 18 C -0.05 -1.96 7.36 22.25 0.16 -1.80 16 19 C 0.08 2.21 3.38 44.95 0.15 2.36 16 20 H 0.12 3.78 6.97 -2.39 -0.02 3.76 16 21 C -0.14 -2.24 5.80 31.63 0.18 -2.06 16 22 C 0.10 1.38 1.24 -10.26 -0.01 1.37 16 23 C -0.17 -1.84 8.77 71.98 0.63 -1.21 16 24 C -0.14 -1.06 8.92 71.98 0.64 -0.42 16 25 O -0.34 -8.25 10.48 -50.15 -0.53 -8.77 16 26 C 0.48 14.79 6.97 71.44 0.50 15.29 16 27 O -0.49 -19.98 18.00 21.65 0.39 -19.60 16 28 H 0.10 1.74 6.91 -2.39 -0.02 1.73 16 29 H 0.07 1.57 7.27 -2.39 -0.02 1.55 16 30 H 0.09 2.71 4.76 -2.39 -0.01 2.70 16 31 H 0.08 4.41 7.93 -2.91 -0.02 4.39 16 32 H 0.10 5.87 6.09 -2.91 -0.02 5.85 16 33 H 0.29 13.43 8.29 -92.71 -0.77 12.67 16 34 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.15 4.62 4.70 -2.91 -0.01 4.60 16 36 H 0.12 1.47 6.60 -2.39 -0.02 1.45 16 37 H 0.13 1.46 7.92 -2.39 -0.02 1.44 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16 41 H 0.07 0.57 8.13 -2.38 -0.02 0.55 16 42 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -73.00 352.17 5.71 -67.30 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 1.04 Total: 27.63 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 4.94 Total: -12.33 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -2.11 Total: -62.33 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -0.20 Total: -57.80 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.53 kcal Total: -73.00 5.71 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816726455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.936 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds