Wall clock time and date at job start Tue Mar 31 2020 10:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48505 * 109.46926 * 274.53782 * 3 2 1 5 5 H 1.48494 * 109.47636 * 34.53800 * 3 2 1 6 6 H 1.48506 * 109.47332 * 154.54101 * 3 2 1 7 7 C 1.39939 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00583 * 341.85263 * 7 2 1 9 9 C 1.41438 * 119.99542 * 161.84131 * 7 2 1 10 10 C 1.40783 * 120.18226 * 331.24503 * 9 7 2 11 11 C 1.37711 * 120.03969 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41375 * 359.78445 * 11 10 9 13 13 C 1.39877 * 120.35831 * 0.47289 * 12 11 10 14 14 C 1.47884 * 120.02491 * 179.78076 * 13 12 11 15 15 O 1.21549 * 119.99537 * 145.55672 * 14 13 12 16 16 N 1.34771 * 120.00168 * 325.55386 * 14 13 12 17 17 C 1.46931 * 120.62830 * 173.91900 * 16 14 13 18 18 C 1.53191 * 108.77065 * 126.12124 * 17 16 14 19 19 C 1.53042 * 109.31646 * 54.63825 * 18 17 16 20 20 C 1.53049 * 109.53545 * 298.63061 * 19 18 17 21 21 H 1.08994 * 109.49719 * 301.38265 * 20 19 18 22 22 C 1.52997 * 109.49816 * 181.31540 * 20 19 18 23 23 C 1.50702 * 109.47061 * 175.00249 * 22 20 19 24 24 O 1.20821 * 119.99775 * 0.02562 * 23 22 20 25 25 O 1.34231 * 119.99919 * 180.02562 * 23 22 20 26 26 C 1.46926 * 120.63082 * 353.64854 * 16 14 13 27 27 C 1.39036 * 119.94928 * 359.51136 * 13 12 11 28 28 H 0.97008 * 119.99536 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.98013 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.79080 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.82100 * 180.23372 * 12 11 10 32 32 H 1.08997 * 109.58472 * 245.90385 * 17 16 14 33 33 H 1.08989 * 109.58787 * 6.19262 * 17 16 14 34 34 H 1.09000 * 109.49634 * 174.58366 * 18 17 16 35 35 H 1.08997 * 109.50304 * 294.68333 * 18 17 16 36 36 H 1.08999 * 109.46189 * 58.64702 * 19 18 17 37 37 H 1.09001 * 109.46478 * 178.61602 * 19 18 17 38 38 H 1.09000 * 109.47178 * 295.00421 * 22 20 19 39 39 H 1.08997 * 109.46960 * 55.00003 * 22 20 19 40 40 H 0.96694 * 116.99762 * 179.97438 * 25 23 22 41 41 H 1.08998 * 109.58318 * 353.66019 * 26 16 14 42 42 H 1.08997 * 109.59038 * 114.09423 * 26 16 14 43 43 H 1.07993 * 120.20648 * 180.27545 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3938 2.1018 -1.3957 5 1 1.4911 2.6231 0.7937 6 1 3.5846 1.4144 0.6019 7 6 2.0079 -1.2119 0.0005 8 1 1.5082 -2.1239 0.2922 9 6 3.3694 -1.2426 -0.3812 10 6 3.8697 -0.2958 -1.2952 11 6 5.1960 -0.3280 -1.6644 12 6 6.0464 -1.2848 -1.1390 13 6 5.5662 -2.2369 -0.2337 14 6 6.4804 -3.2591 0.3196 15 8 6.3342 -3.6514 1.4607 16 7 7.4757 -3.7557 -0.4414 17 6 8.4717 -4.6709 0.1327 18 6 8.5216 -5.9427 -0.7197 19 6 8.7836 -5.5640 -2.1792 20 6 7.6419 -4.6833 -2.6923 21 1 6.6982 -5.2207 -2.6000 22 6 7.8882 -4.3323 -4.1609 23 6 6.7058 -3.5691 -4.7001 24 8 5.7632 -3.3300 -3.9830 25 8 6.6999 -3.1549 -5.9769 26 6 7.5820 -3.3971 -1.8622 27 6 4.2299 -2.2180 0.1498 28 1 -0.4850 0.8402 -0.0004 29 1 3.2132 0.4567 -1.7064 30 1 5.5757 0.4005 -2.3656 31 1 7.0858 -1.2989 -1.4323 32 1 9.4508 -4.1921 0.1323 33 1 8.1891 -4.9241 1.1544 34 1 9.3231 -6.5891 -0.3621 35 1 7.5695 -6.4681 -0.6455 36 1 9.7238 -5.0171 -2.2493 37 1 8.8441 -6.4689 -2.7840 38 1 8.7849 -3.7180 -4.2423 39 1 8.0221 -5.2485 -4.7359 40 1 5.9195 -2.6694 -6.2773 41 1 6.7111 -2.8120 -2.1575 42 1 8.4887 -2.8145 -2.0252 43 1 3.8557 -2.9484 0.8518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819091219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:52 Heat of formation + Delta-G solvation = -108.495677 kcal Electronic energy + Delta-G solvation = -27209.041913 eV Core-core repulsion = 23411.584373 eV Total energy + Delta-G solvation = -3797.457540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64237 -39.75608 -37.77975 -37.03908 -36.05762 -33.79309 -33.47783 -32.38862 -30.41356 -29.90244 -28.07846 -25.59418 -25.28100 -23.35126 -22.53400 -21.15888 -20.69478 -20.17210 -19.11075 -17.99420 -17.57125 -16.60810 -16.31377 -16.19126 -15.82173 -15.34268 -14.93012 -14.77265 -14.45519 -14.04124 -13.89639 -13.51911 -13.34059 -12.92516 -12.82256 -12.71512 -12.66036 -12.38794 -12.09716 -11.94213 -11.55145 -11.46616 -11.25807 -11.01272 -10.94317 -10.93291 -10.72856 -10.68692 -10.47896 -10.22169 -9.90215 -9.65339 -9.39014 -8.97807 -8.40599 -7.77591 -7.62546 -6.95810 -4.48767 2.07776 2.22103 2.58190 2.95842 3.08998 3.21002 3.27268 3.30781 3.57113 3.97767 4.43487 4.48208 4.60646 4.68209 4.88443 4.99686 5.14079 5.25824 5.29530 5.34917 5.37192 5.41677 5.54915 5.60111 5.72181 5.82115 5.93805 5.96945 6.01965 6.06658 6.17153 6.25078 6.42977 6.54011 6.70259 6.75894 6.84583 7.05860 7.29219 7.46206 7.57136 7.73547 7.81736 7.89235 8.03280 8.33325 8.59831 8.68845 8.77519 10.06562 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.004532 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.713352 B = 6177.444462 C = 7411.977660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.443 4.443 8 H 0.092 0.908 9 C 0.086 3.914 10 C -0.222 4.222 11 C -0.079 4.079 12 C -0.215 4.215 13 C -0.099 4.099 14 C 0.569 3.431 15 O -0.548 6.548 16 N -0.611 5.611 17 C 0.109 3.891 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.097 4.097 21 H 0.087 0.913 22 C -0.104 4.104 23 C 0.463 3.537 24 O -0.484 6.484 25 O -0.525 6.525 26 C 0.086 3.914 27 C -0.142 4.142 28 H 0.286 0.714 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.411 0.589 41 H 0.137 0.863 42 H 0.058 0.942 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.254 -6.881 -10.270 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.471 4.471 8 H 0.110 0.890 9 C 0.083 3.917 10 C -0.242 4.242 11 C -0.097 4.097 12 C -0.235 4.235 13 C -0.102 4.102 14 C 0.360 3.640 15 O -0.426 6.426 16 N -0.345 5.345 17 C -0.014 4.014 18 C -0.171 4.171 19 C -0.150 4.150 20 C -0.116 4.116 21 H 0.105 0.895 22 C -0.143 4.143 23 C 0.304 3.696 24 O -0.370 6.370 25 O -0.338 6.338 26 C -0.036 4.036 27 C -0.162 4.162 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.270 0.730 41 H 0.155 0.845 42 H 0.076 0.924 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.963 -7.152 -9.262 20.608 hybrid contribution -0.243 1.056 -0.427 1.165 sum 16.720 -6.096 -9.689 20.263 Atomic orbital electron populations 1.69696 1.08083 1.30281 1.34934 1.26150 0.94735 1.01717 0.90891 0.86320 0.81355 0.79729 0.78778 1.19635 1.21796 1.16679 1.19502 0.92926 0.96259 1.38401 0.88976 1.17654 0.93058 0.90922 0.90042 1.21120 0.95646 1.03939 1.03460 1.20448 0.93794 0.97051 0.98456 1.20480 0.98356 1.00333 1.04330 1.19321 0.94244 0.96596 1.00058 1.18920 0.79312 0.80853 0.84875 1.90686 1.71938 1.61133 1.18852 1.47892 1.28535 1.47651 1.10394 1.21529 0.91486 0.89612 0.98744 1.21888 1.02588 0.97620 0.95014 1.21567 0.97808 0.99311 0.96320 1.21473 1.00526 0.98024 0.91623 0.89453 1.21362 0.95322 1.01013 0.96566 1.23517 0.88976 0.77572 0.79537 1.90886 1.36073 1.52220 1.57804 1.84482 1.49313 1.69806 1.30194 1.22647 1.04987 0.96130 0.79838 1.21130 0.91164 1.02366 1.01536 0.90404 0.88025 0.88591 0.88114 0.91993 0.89051 0.90764 0.91323 0.91544 0.91535 0.87644 0.87534 0.73021 0.84548 0.92426 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.72 13.93 55.55 0.77 -20.94 16 2 C 0.08 2.24 5.41 -17.34 -0.09 2.14 16 3 Si 0.91 21.04 24.49 -169.99 -4.16 16.87 16 4 H -0.27 -5.97 6.66 56.52 0.38 -5.59 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.24 -5.80 6.87 56.52 0.39 -5.41 16 7 C -0.44 -12.28 9.57 -37.73 -0.36 -12.64 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 C 0.09 2.26 5.13 -106.87 -0.55 1.71 16 10 C -0.22 -5.40 7.17 -38.81 -0.28 -5.68 16 11 C -0.08 -1.70 10.01 -39.73 -0.40 -2.10 16 12 C -0.22 -4.46 7.37 -38.92 -0.29 -4.75 16 13 C -0.10 -2.25 5.30 -105.04 -0.56 -2.81 16 14 C 0.57 11.96 7.39 -12.31 -0.09 11.87 16 15 O -0.55 -12.94 16.21 5.32 0.09 -12.85 16 16 N -0.61 -9.92 2.97 -173.87 -0.52 -10.43 16 17 C 0.11 1.40 6.44 -3.71 -0.02 1.38 16 18 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 19 C -0.11 -0.94 5.17 -26.68 -0.14 -1.07 16 20 C -0.10 -1.05 1.98 -90.49 -0.18 -1.23 16 21 H 0.09 1.15 7.95 -51.93 -0.41 0.74 16 22 C -0.10 -0.86 5.29 -27.88 -0.15 -1.01 16 23 C 0.46 5.23 8.08 36.01 0.29 5.52 16 24 O -0.48 -7.78 14.75 -18.75 -0.28 -8.06 16 25 O -0.53 -4.74 13.42 -39.26 -0.53 -5.27 16 26 C 0.09 1.20 3.70 -3.71 -0.01 1.18 16 27 C -0.14 -3.58 9.35 -38.44 -0.36 -3.94 16 28 H 0.29 6.94 8.30 -40.82 -0.34 6.61 16 29 H 0.10 2.44 4.55 -52.48 -0.24 2.21 16 30 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.10 1.80 5.96 -52.48 -0.31 1.48 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.33 6.99 -51.94 -0.36 0.97 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.41 2.49 9.10 45.56 0.41 2.91 16 41 H 0.14 2.29 2.41 -51.93 -0.13 2.16 16 42 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 43 H 0.11 2.79 7.98 -52.49 -0.42 2.37 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -33.24 344.22 -7.63 -40.87 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.85 Total: 7.53 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.35 Total: -12.91 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.26 Total: -31.38 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.72 Total: -26.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.16 Total: 16.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.24 -7.63 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819091219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.626 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds