Wall clock time and date at job start Tue Mar 31 2020 10:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48505 * 109.46926 * 274.53782 * 3 2 1 5 5 H 1.48494 * 109.47636 * 34.53800 * 3 2 1 6 6 H 1.48506 * 109.47332 * 154.54101 * 3 2 1 7 7 C 1.39939 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00583 * 341.85263 * 7 2 1 9 9 C 1.41438 * 119.99542 * 161.84131 * 7 2 1 10 10 C 1.40783 * 120.18226 * 331.24503 * 9 7 2 11 11 C 1.37711 * 120.03969 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41375 * 359.78445 * 11 10 9 13 13 C 1.39877 * 120.35831 * 0.47289 * 12 11 10 14 14 C 1.47884 * 120.02491 * 179.78076 * 13 12 11 15 15 O 1.21549 * 119.99537 * 145.55672 * 14 13 12 16 16 N 1.34771 * 120.00168 * 325.55386 * 14 13 12 17 17 C 1.46931 * 120.62830 * 173.91900 * 16 14 13 18 18 C 1.53191 * 108.77065 * 126.12124 * 17 16 14 19 19 C 1.53042 * 109.31646 * 54.63825 * 18 17 16 20 20 C 1.53049 * 109.53545 * 298.63061 * 19 18 17 21 21 H 1.08994 * 109.49719 * 301.38265 * 20 19 18 22 22 C 1.52997 * 109.49816 * 181.31540 * 20 19 18 23 23 C 1.50702 * 109.47061 * 175.00249 * 22 20 19 24 24 O 1.20821 * 119.99775 * 0.02562 * 23 22 20 25 25 O 1.34231 * 119.99919 * 180.02562 * 23 22 20 26 26 C 1.46926 * 120.63082 * 353.64854 * 16 14 13 27 27 C 1.39036 * 119.94928 * 359.51136 * 13 12 11 28 28 H 0.97008 * 119.99536 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.98013 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.79080 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.82100 * 180.23372 * 12 11 10 32 32 H 1.08997 * 109.58472 * 245.90385 * 17 16 14 33 33 H 1.08989 * 109.58787 * 6.19262 * 17 16 14 34 34 H 1.09000 * 109.49634 * 174.58366 * 18 17 16 35 35 H 1.08997 * 109.50304 * 294.68333 * 18 17 16 36 36 H 1.08999 * 109.46189 * 58.64702 * 19 18 17 37 37 H 1.09001 * 109.46478 * 178.61602 * 19 18 17 38 38 H 1.09000 * 109.47178 * 295.00421 * 22 20 19 39 39 H 1.08997 * 109.46960 * 55.00003 * 22 20 19 40 40 H 0.96694 * 116.99762 * 179.97438 * 25 23 22 41 41 H 1.08998 * 109.58318 * 353.66019 * 26 16 14 42 42 H 1.08997 * 109.59038 * 114.09423 * 26 16 14 43 43 H 1.07993 * 120.20648 * 180.27545 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3938 2.1018 -1.3957 5 1 1.4911 2.6231 0.7937 6 1 3.5846 1.4144 0.6019 7 6 2.0079 -1.2119 0.0005 8 1 1.5082 -2.1239 0.2922 9 6 3.3694 -1.2426 -0.3812 10 6 3.8697 -0.2958 -1.2952 11 6 5.1960 -0.3280 -1.6644 12 6 6.0464 -1.2848 -1.1390 13 6 5.5662 -2.2369 -0.2337 14 6 6.4804 -3.2591 0.3196 15 8 6.3342 -3.6514 1.4607 16 7 7.4757 -3.7557 -0.4414 17 6 8.4717 -4.6709 0.1327 18 6 8.5216 -5.9427 -0.7197 19 6 8.7836 -5.5640 -2.1792 20 6 7.6419 -4.6833 -2.6923 21 1 6.6982 -5.2207 -2.6000 22 6 7.8882 -4.3323 -4.1609 23 6 6.7058 -3.5691 -4.7001 24 8 5.7632 -3.3300 -3.9830 25 8 6.6999 -3.1549 -5.9769 26 6 7.5820 -3.3971 -1.8622 27 6 4.2299 -2.2180 0.1498 28 1 -0.4850 0.8402 -0.0004 29 1 3.2132 0.4567 -1.7064 30 1 5.5757 0.4005 -2.3656 31 1 7.0858 -1.2989 -1.4323 32 1 9.4508 -4.1921 0.1323 33 1 8.1891 -4.9241 1.1544 34 1 9.3231 -6.5891 -0.3621 35 1 7.5695 -6.4681 -0.6455 36 1 9.7238 -5.0171 -2.2493 37 1 8.8441 -6.4689 -2.7840 38 1 8.7849 -3.7180 -4.2423 39 1 8.0221 -5.2485 -4.7359 40 1 5.9195 -2.6694 -6.2773 41 1 6.7111 -2.8120 -2.1575 42 1 8.4887 -2.8145 -2.0252 43 1 3.8557 -2.9484 0.8518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819091219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:51 Heat of formation + Delta-G solvation = -131.762331 kcal Electronic energy + Delta-G solvation = -27210.050831 eV Core-core repulsion = 23411.584373 eV Total energy + Delta-G solvation = -3798.466458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75108 -40.95688 -39.31539 -38.49470 -36.93567 -35.67419 -34.64474 -33.57038 -32.16267 -31.65142 -28.96345 -27.21749 -26.81367 -24.51499 -23.83970 -22.59174 -22.15256 -21.16441 -20.49963 -19.28204 -18.80995 -17.91615 -17.72494 -17.39120 -17.19096 -16.68577 -16.46109 -16.23565 -15.63648 -15.40594 -15.28977 -14.70006 -14.63381 -14.42163 -14.30980 -14.02635 -13.90165 -13.64816 -13.39180 -13.26519 -12.94846 -12.77234 -12.67168 -12.35932 -12.32358 -12.04665 -11.91803 -11.76874 -11.70762 -11.63206 -11.52189 -11.24492 -11.20000 -10.65421 -9.77507 -9.59229 -9.44825 -8.94591 -6.56918 0.25284 0.71655 1.21992 1.38741 1.40463 1.45824 1.77001 2.03451 2.10806 2.29403 2.58430 3.40029 3.52401 3.78948 3.84532 3.93212 4.08656 4.20546 4.22234 4.31009 4.38098 4.46941 4.55116 4.62945 4.69383 4.76197 4.81605 4.85858 4.88826 4.96571 4.99342 5.04417 5.13152 5.16584 5.27393 5.40534 5.48094 5.59260 5.62591 5.71392 5.80886 5.83759 6.07719 6.25477 6.35947 6.63700 6.71643 7.11564 7.14731 8.14690 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.004532 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.713352 B = 6177.444462 C = 7411.977660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.047 3.953 3 Si 0.968 3.032 4 H -0.245 1.245 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.048 0.952 9 C 0.070 3.930 10 C -0.226 4.226 11 C -0.079 4.079 12 C -0.181 4.181 13 C -0.105 4.105 14 C 0.558 3.442 15 O -0.589 6.589 16 N -0.599 5.599 17 C 0.101 3.899 18 C -0.129 4.129 19 C -0.104 4.104 20 C -0.093 4.093 21 H 0.050 0.950 22 C -0.097 4.097 23 C 0.465 3.535 24 O -0.544 6.544 25 O -0.518 6.518 26 C 0.074 3.926 27 C -0.175 4.175 28 H 0.296 0.704 29 H 0.107 0.893 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.422 0.578 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.665 -6.001 -13.388 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.170 1.170 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.067 3.933 10 C -0.246 4.246 11 C -0.097 4.097 12 C -0.201 4.201 13 C -0.108 4.108 14 C 0.349 3.651 15 O -0.472 6.472 16 N -0.330 5.330 17 C -0.020 4.020 18 C -0.167 4.167 19 C -0.141 4.141 20 C -0.112 4.112 21 H 0.069 0.931 22 C -0.134 4.134 23 C 0.309 3.691 24 O -0.434 6.434 25 O -0.331 6.331 26 C -0.047 4.047 27 C -0.196 4.196 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.283 0.717 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.414 -6.296 -12.458 26.405 hybrid contribution -1.702 0.611 0.421 1.857 sum 20.711 -5.686 -12.038 24.621 Atomic orbital electron populations 1.69719 1.09240 1.31678 1.36724 1.26875 0.95437 1.04292 0.90124 0.85471 0.79379 0.75977 0.80111 1.16982 1.20087 1.17980 1.19442 0.94394 0.95768 1.42187 0.93342 1.17740 0.92482 0.92143 0.90913 1.21304 0.97253 1.03253 1.02755 1.20955 0.92495 0.97733 0.98506 1.20992 1.00187 0.97747 1.01135 1.19636 0.93475 0.97653 1.00040 1.18774 0.80403 0.81103 0.84833 1.90659 1.73313 1.62482 1.20699 1.47983 1.27191 1.46670 1.11165 1.21860 0.91527 0.90698 0.97952 1.21896 1.02489 0.96134 0.96222 1.21578 0.97601 1.00227 0.94729 1.21383 1.00224 0.96452 0.93182 0.93099 1.21468 0.94875 1.02578 0.94502 1.24211 0.88959 0.76547 0.79432 1.90890 1.38462 1.54749 1.59292 1.84465 1.49942 1.69527 1.29171 1.22868 1.05219 0.98301 0.78347 1.21070 0.92959 1.02803 1.02731 0.89354 0.87543 0.83891 0.83939 0.88597 0.91697 0.87652 0.93958 0.88527 0.88964 0.84142 0.84423 0.71713 0.87546 0.88609 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.26 13.93 21.82 0.30 -47.95 16 2 C 0.05 2.65 5.41 85.25 0.46 3.11 16 3 Si 0.97 43.76 24.49 68.60 1.68 45.44 16 4 H -0.25 -10.02 6.66 99.48 0.66 -9.36 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.26 -11.96 6.87 99.48 0.68 -11.28 16 7 C -0.49 -29.58 9.57 23.47 0.22 -29.36 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 9 C 0.07 3.87 5.13 -21.32 -0.11 3.76 16 10 C -0.23 -10.96 7.17 22.77 0.16 -10.79 16 11 C -0.08 -3.18 10.01 22.18 0.22 -2.96 16 12 C -0.18 -7.09 7.37 22.70 0.17 -6.93 16 13 C -0.11 -4.86 5.30 -20.13 -0.11 -4.97 16 14 C 0.56 23.92 7.39 86.80 0.64 24.56 16 15 O -0.59 -29.31 16.21 -3.87 -0.06 -29.37 16 16 N -0.60 -18.42 2.97 -822.27 -2.44 -20.86 16 17 C 0.10 2.35 6.44 86.36 0.56 2.91 16 18 C -0.13 -2.15 6.08 30.67 0.19 -1.96 16 19 C -0.10 -1.16 5.17 30.62 0.16 -1.00 16 20 C -0.09 -1.66 1.98 -10.71 -0.02 -1.68 16 21 H 0.05 1.29 7.95 -2.39 -0.02 1.28 16 22 C -0.10 -1.09 5.29 29.85 0.16 -0.93 16 23 C 0.46 9.10 8.08 71.24 0.58 9.67 16 24 O -0.54 -16.97 14.75 21.98 0.32 -16.65 16 25 O -0.52 -7.62 13.42 -51.43 -0.69 -8.31 16 26 C 0.07 1.78 3.70 86.37 0.32 2.10 16 27 C -0.18 -9.52 9.35 23.01 0.22 -9.31 16 28 H 0.30 14.96 8.30 -92.70 -0.77 14.19 16 29 H 0.11 5.01 4.55 -2.91 -0.01 4.99 16 30 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.14 4.39 5.96 -2.91 -0.02 4.37 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.87 6.99 -2.39 -0.02 1.86 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.42 4.12 9.10 -74.06 -0.67 3.45 16 41 H 0.11 3.29 2.41 -2.39 -0.01 3.29 16 42 H 0.10 1.63 8.04 -2.39 -0.02 1.61 16 43 H 0.08 4.75 7.98 -2.91 -0.02 4.73 16 Total: -1.00 -82.46 344.22 3.23 -79.23 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.31 Total: 22.25 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.81 Total: -23.77 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -2.14 Total: -68.82 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.43 Total: -54.33 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.68 Total: 45.44 kcal Total: -82.46 3.23 -79.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819091219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.531 kcal (2) G-P(sol) polarization free energy of solvation -82.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds