Wall clock time and date at job start Tue Mar 31 2020 11:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86798 * 120.00430 * 2 1 4 4 H 1.48503 * 109.47038 * 270.00221 * 3 2 1 5 5 H 1.48503 * 109.46893 * 29.99735 * 3 2 1 6 6 H 1.48497 * 109.47204 * 150.00223 * 3 2 1 7 7 C 1.38659 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99849 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00125 * 179.97438 * 7 2 1 10 10 C 1.35746 * 117.00104 * 185.05367 * 9 7 2 11 11 C 1.38903 * 120.06955 * 354.46943 * 10 9 7 12 12 C 1.38075 * 119.93117 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.06769 * 0.02562 * 12 11 10 14 14 C 1.38280 * 120.14209 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.96792 * 180.02562 * 14 13 12 16 16 C 1.50691 * 109.47018 * 90.00310 * 15 14 13 17 17 O 1.21282 * 120.00315 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00041 * 179.97438 * 16 15 14 19 19 C 1.47815 * 134.37975 * 180.02562 * 18 16 15 20 20 C 1.52715 * 85.71757 * 156.28000 * 19 18 16 21 21 C 1.47821 * 134.37380 * 0.02738 * 18 16 15 22 22 C 1.53374 * 115.97581 * 140.75264 * 20 19 18 23 23 C 1.54781 * 103.72508 * 129.43970 * 22 20 19 24 24 O 1.44529 * 104.87434 * 23.70174 * 23 22 20 25 25 C 1.44715 * 105.51189 * 320.24148 * 24 23 22 26 26 C 1.38126 * 120.06651 * 0.27962 * 14 13 12 27 27 H 0.96995 * 119.99450 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03451 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96954 * 179.97438 * 12 11 10 30 30 H 1.08006 * 119.93236 * 179.97438 * 13 12 11 31 31 H 1.09002 * 109.47213 * 329.99775 * 15 14 13 32 32 H 1.08999 * 109.46735 * 210.00317 * 15 14 13 33 33 H 1.09000 * 113.83629 * 42.07865 * 19 18 16 34 34 H 1.09000 * 113.83481 * 270.47394 * 19 18 16 35 35 H 1.08994 * 113.83424 * 89.52676 * 21 18 16 36 36 H 1.09001 * 113.83735 * 317.90986 * 21 18 16 37 37 H 1.09001 * 110.60540 * 10.84099 * 22 20 19 38 38 H 1.08998 * 110.60158 * 248.04036 * 22 20 19 39 39 H 1.09001 * 110.35901 * 142.54515 * 23 22 20 40 40 H 1.09003 * 110.36169 * 264.85134 * 23 22 20 41 41 H 1.09000 * 110.43083 * 158.10203 * 25 24 23 42 42 H 1.09007 * 110.43381 * 280.59663 * 25 24 23 43 43 H 1.07995 * 120.03610 * 179.70136 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4400 0.7000 7 6 2.0089 -1.2009 -0.0005 8 1 1.4688 -2.1362 -0.0005 9 8 3.3572 -1.2009 -0.0011 10 6 3.9733 -2.4058 -0.1081 11 6 3.2232 -3.5747 -0.0952 12 6 3.8528 -4.7986 -0.2048 13 6 5.2292 -4.8615 -0.3268 14 6 5.9789 -3.6996 -0.3401 15 6 7.4782 -3.7725 -0.4738 16 6 7.8548 -3.7335 -1.9324 17 8 6.9909 -3.6537 -2.7799 18 7 9.1518 -3.7861 -2.2951 19 6 9.8646 -3.7706 -3.5900 20 6 11.0606 -3.2511 -2.7951 21 6 10.4287 -3.8825 -1.5566 22 6 12.4312 -3.8038 -3.2055 23 6 13.3003 -2.5354 -3.3835 24 8 12.6582 -1.5284 -2.5695 25 6 11.2372 -1.7246 -2.7607 26 6 5.3554 -2.4724 -0.2255 27 1 -0.4849 0.8400 0.0004 28 1 2.1485 -3.5263 -0.0003 29 1 3.2702 -5.7079 -0.1943 30 1 5.7195 -5.8200 -0.4120 31 1 7.8378 -4.7011 -0.0304 32 1 7.9305 -2.9250 0.0411 33 1 9.4645 -3.0512 -4.3044 34 1 10.0181 -4.7603 -4.0202 35 1 10.7533 -4.9061 -1.3699 36 1 10.4731 -3.2511 -0.6692 37 1 12.3579 -4.3531 -4.1441 38 1 12.8386 -4.4407 -2.4204 39 1 14.3150 -2.7184 -3.0298 40 1 13.3120 -2.2272 -4.4290 41 1 10.6787 -1.2971 -1.9280 42 1 10.9153 -1.2817 -3.7032 43 1 5.9418 -1.5655 -0.2311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819392105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:45 Heat of formation + Delta-G solvation = -39.656545 kcal Electronic energy + Delta-G solvation = -25692.258405 eV Core-core repulsion = 21897.785954 eV Total energy + Delta-G solvation = -3794.472451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34275 -39.47071 -38.74402 -37.34568 -36.45172 -32.47791 -32.27216 -31.73796 -29.77019 -29.33739 -27.63639 -26.73801 -25.74234 -25.02718 -23.19441 -21.77071 -20.88932 -19.88780 -19.05813 -17.67829 -17.17542 -17.13549 -16.84385 -16.18204 -15.79086 -15.57711 -15.30761 -15.17849 -14.84348 -14.29870 -13.90710 -13.70223 -13.53656 -13.44073 -13.41849 -13.05310 -12.58814 -12.42616 -12.25162 -12.13462 -12.00620 -11.87993 -11.67438 -11.42845 -11.27260 -10.95126 -10.81165 -10.72851 -10.72138 -10.21253 -10.12238 -9.74447 -9.34707 -8.91228 -8.82626 -8.11219 -7.31775 -6.36679 -4.03269 2.00955 2.31958 2.60314 2.71153 3.25277 3.29688 3.43337 3.43772 3.77703 3.93267 4.26827 4.28249 4.36637 4.47777 4.65490 4.70750 4.76910 4.94031 4.99957 5.03075 5.08931 5.14614 5.17531 5.20734 5.23890 5.28160 5.33568 5.39010 5.44545 5.57192 5.58216 5.69949 5.72795 5.87646 6.15669 6.28997 6.31689 6.56598 6.82665 7.13380 7.24751 7.35356 7.49915 7.65095 7.85364 8.09039 8.18955 8.98925 9.61899 10.71221 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.002795 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.402936 B =10013.843215 C =11199.014784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.161 3.839 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.036 4.036 15 C -0.087 4.087 16 C 0.537 3.463 17 O -0.515 6.515 18 N -0.653 5.653 19 C 0.123 3.877 20 C -0.132 4.132 21 C 0.119 3.881 22 C -0.141 4.141 23 C 0.044 3.956 24 O -0.374 6.374 25 C 0.071 3.929 26 C -0.174 4.174 27 H 0.279 0.721 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.074 -9.292 -4.360 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.207 4.207 14 C -0.037 4.037 15 C -0.126 4.126 16 C 0.327 3.673 17 O -0.389 6.389 18 N -0.392 5.392 19 C 0.001 3.999 20 C -0.133 4.133 21 C -0.004 4.004 22 C -0.179 4.179 23 C -0.033 4.033 24 O -0.292 6.292 25 C -0.006 4.006 26 C -0.194 4.194 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 26.321 -8.695 -4.596 28.099 hybrid contribution -0.015 0.339 -0.198 0.393 sum 26.306 -8.356 -4.794 28.015 Atomic orbital electron populations 1.69651 1.05535 1.28388 1.48408 1.24457 0.95022 0.98776 0.95769 0.86185 0.80295 0.81478 0.78961 1.19904 1.20819 1.18397 1.20767 0.76912 0.96618 1.52079 0.87652 1.83565 1.22584 1.25633 1.80672 1.18999 0.91478 0.85570 0.93062 1.21300 1.01125 0.91944 1.09254 1.20734 0.94065 0.96761 0.97843 1.20411 0.93970 0.96446 1.09888 1.18664 0.92148 0.93086 0.99781 1.20520 0.95027 1.04423 0.92664 1.20511 0.79764 0.75459 0.91605 1.90780 1.47271 1.47828 1.53020 1.50204 1.04394 1.75284 1.09327 1.22988 0.87232 1.01231 0.88477 1.23099 0.94969 0.97418 0.97821 1.23110 0.80480 1.00926 0.95879 1.22783 0.93533 0.98643 1.02964 1.23484 0.97353 0.86879 0.95572 1.89214 1.17770 1.54528 1.67720 1.23128 0.82690 0.92040 1.02728 1.19931 0.92035 0.96895 1.10499 0.91125 0.84954 0.87145 0.87790 0.88441 0.88392 0.89734 0.89500 0.89263 0.89374 0.89721 0.89800 0.88945 0.92096 0.88423 0.91295 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 13.96 55.48 0.77 -25.30 16 2 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 3 Si 0.91 22.32 28.62 -169.99 -4.86 17.45 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.39 -11.30 9.95 30.89 0.31 -10.99 16 8 H 0.11 3.13 5.44 -52.48 -0.29 2.84 16 9 O -0.22 -6.02 8.59 0.06 0.00 -6.02 16 10 C 0.16 3.91 6.65 -39.10 -0.26 3.65 16 11 C -0.22 -4.94 9.17 -39.40 -0.36 -5.30 16 12 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.19 -3.37 9.70 -39.53 -0.38 -3.76 16 14 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.09 -1.14 5.57 -29.04 -0.16 -1.31 16 16 C 0.54 7.88 8.05 -10.99 -0.09 7.79 16 17 O -0.52 -10.23 16.76 5.56 0.09 -10.14 16 18 N -0.65 -6.84 3.62 -184.70 -0.67 -7.51 16 19 C 0.12 1.01 8.06 -3.47 -0.03 0.98 16 20 C -0.13 -0.84 1.21 -154.43 -0.19 -1.03 16 21 C 0.12 0.78 7.77 -3.47 -0.03 0.75 16 22 C -0.14 -0.61 6.60 -25.60 -0.17 -0.78 16 23 C 0.04 0.24 7.66 38.10 0.29 0.53 16 24 O -0.37 -3.27 11.66 -35.23 -0.41 -3.68 16 25 C 0.07 0.55 7.08 37.52 0.27 0.82 16 26 C -0.17 -3.68 9.65 -39.39 -0.38 -4.06 16 27 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.13 3.13 5.64 -52.49 -0.30 2.83 16 29 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 32 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.09 0.59 8.13 -51.93 -0.42 0.16 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 37 H 0.08 0.27 7.97 -51.93 -0.41 -0.14 16 38 H 0.08 0.29 7.97 -51.93 -0.41 -0.12 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.80 7.91 -51.93 -0.41 0.39 16 42 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 43 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -35.22 361.86 -7.76 -42.98 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.01 Total: 0.71 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.13 Total: -13.95 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.11 Total: -32.81 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.32 Total: -19.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.86 Total: 17.45 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.22 -7.76 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819392105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.322 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds