Wall clock time and date at job start Tue Mar 31 2020 11:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86798 * 120.00430 * 2 1 4 4 H 1.48503 * 109.47038 * 270.00221 * 3 2 1 5 5 H 1.48503 * 109.46893 * 29.99735 * 3 2 1 6 6 H 1.48497 * 109.47204 * 150.00223 * 3 2 1 7 7 C 1.38659 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99849 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00125 * 179.97438 * 7 2 1 10 10 C 1.35746 * 117.00104 * 185.05367 * 9 7 2 11 11 C 1.38903 * 120.06955 * 354.46943 * 10 9 7 12 12 C 1.38075 * 119.93117 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.06769 * 0.02562 * 12 11 10 14 14 C 1.38280 * 120.14209 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.96792 * 180.02562 * 14 13 12 16 16 C 1.50691 * 109.47018 * 90.00310 * 15 14 13 17 17 O 1.21282 * 120.00315 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00041 * 179.97438 * 16 15 14 19 19 C 1.47815 * 134.37975 * 180.02562 * 18 16 15 20 20 C 1.52715 * 85.71757 * 156.28000 * 19 18 16 21 21 C 1.47821 * 134.37380 * 0.02738 * 18 16 15 22 22 C 1.53374 * 115.97581 * 140.75264 * 20 19 18 23 23 C 1.54781 * 103.72508 * 129.43970 * 22 20 19 24 24 O 1.44529 * 104.87434 * 23.70174 * 23 22 20 25 25 C 1.44715 * 105.51189 * 320.24148 * 24 23 22 26 26 C 1.38126 * 120.06651 * 0.27962 * 14 13 12 27 27 H 0.96995 * 119.99450 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03451 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96954 * 179.97438 * 12 11 10 30 30 H 1.08006 * 119.93236 * 179.97438 * 13 12 11 31 31 H 1.09002 * 109.47213 * 329.99775 * 15 14 13 32 32 H 1.08999 * 109.46735 * 210.00317 * 15 14 13 33 33 H 1.09000 * 113.83629 * 42.07865 * 19 18 16 34 34 H 1.09000 * 113.83481 * 270.47394 * 19 18 16 35 35 H 1.08994 * 113.83424 * 89.52676 * 21 18 16 36 36 H 1.09001 * 113.83735 * 317.90986 * 21 18 16 37 37 H 1.09001 * 110.60540 * 10.84099 * 22 20 19 38 38 H 1.08998 * 110.60158 * 248.04036 * 22 20 19 39 39 H 1.09001 * 110.35901 * 142.54515 * 23 22 20 40 40 H 1.09003 * 110.36169 * 264.85134 * 23 22 20 41 41 H 1.09000 * 110.43083 * 158.10203 * 25 24 23 42 42 H 1.09007 * 110.43381 * 280.59663 * 25 24 23 43 43 H 1.07995 * 120.03610 * 179.70136 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4400 0.7000 7 6 2.0089 -1.2009 -0.0005 8 1 1.4688 -2.1362 -0.0005 9 8 3.3572 -1.2009 -0.0011 10 6 3.9733 -2.4058 -0.1081 11 6 3.2232 -3.5747 -0.0952 12 6 3.8528 -4.7986 -0.2048 13 6 5.2292 -4.8615 -0.3268 14 6 5.9789 -3.6996 -0.3401 15 6 7.4782 -3.7725 -0.4738 16 6 7.8548 -3.7335 -1.9324 17 8 6.9909 -3.6537 -2.7799 18 7 9.1518 -3.7861 -2.2951 19 6 9.8646 -3.7706 -3.5900 20 6 11.0606 -3.2511 -2.7951 21 6 10.4287 -3.8825 -1.5566 22 6 12.4312 -3.8038 -3.2055 23 6 13.3003 -2.5354 -3.3835 24 8 12.6582 -1.5284 -2.5695 25 6 11.2372 -1.7246 -2.7607 26 6 5.3554 -2.4724 -0.2255 27 1 -0.4849 0.8400 0.0004 28 1 2.1485 -3.5263 -0.0003 29 1 3.2702 -5.7079 -0.1943 30 1 5.7195 -5.8200 -0.4120 31 1 7.8378 -4.7011 -0.0304 32 1 7.9305 -2.9250 0.0411 33 1 9.4645 -3.0512 -4.3044 34 1 10.0181 -4.7603 -4.0202 35 1 10.7533 -4.9061 -1.3699 36 1 10.4731 -3.2511 -0.6692 37 1 12.3579 -4.3531 -4.1441 38 1 12.8386 -4.4407 -2.4204 39 1 14.3150 -2.7184 -3.0298 40 1 13.3120 -2.2272 -4.4290 41 1 10.6787 -1.2971 -1.9280 42 1 10.9153 -1.2817 -3.7032 43 1 5.9418 -1.5655 -0.2311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819392105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:44 Heat of formation + Delta-G solvation = -63.784955 kcal Electronic energy + Delta-G solvation = -25693.304692 eV Core-core repulsion = 21897.785954 eV Total energy + Delta-G solvation = -3795.518738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01058 -40.98696 -39.95638 -38.45029 -37.83070 -34.49944 -33.65271 -32.50695 -31.13436 -30.32712 -28.73709 -27.35302 -27.26350 -26.47778 -23.68565 -23.35972 -22.48050 -20.71590 -19.85702 -19.62285 -18.85346 -18.05808 -17.47264 -17.02814 -16.84572 -16.72400 -16.44665 -16.21223 -15.91640 -15.81165 -15.66497 -15.16175 -14.85708 -14.48289 -14.31594 -14.14912 -13.99596 -13.93362 -13.63199 -13.07864 -12.92324 -12.75893 -12.64671 -12.53291 -12.43776 -12.37117 -12.33016 -11.95599 -11.94263 -11.41195 -11.33643 -10.95413 -10.83612 -10.74043 -9.74196 -9.69112 -9.09036 -8.52113 -6.24868 0.44858 0.67193 1.27705 1.32874 1.48887 1.62403 1.80765 2.26022 2.73983 2.91917 2.98578 3.13145 3.27202 3.41144 3.64880 3.79911 3.89793 3.99805 4.04675 4.25764 4.27829 4.37520 4.44610 4.49527 4.51919 4.54062 4.58358 4.59871 4.67281 4.69943 4.78776 4.81561 4.87525 4.91698 4.97959 5.11303 5.17572 5.22205 5.36843 5.62073 5.69495 5.74328 5.83202 5.89296 6.22336 6.64961 6.82128 7.16163 7.56751 8.59776 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.002795 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.402936 B =10013.843215 C =11199.014784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.077 4.077 13 C -0.171 4.171 14 C -0.029 4.029 15 C -0.083 4.083 16 C 0.533 3.467 17 O -0.584 6.584 18 N -0.653 5.653 19 C 0.116 3.884 20 C -0.121 4.121 21 C 0.121 3.879 22 C -0.131 4.131 23 C 0.035 3.965 24 O -0.398 6.398 25 C 0.066 3.934 26 C -0.182 4.182 27 H 0.285 0.715 28 H 0.108 0.892 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.462 -11.292 -4.111 33.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.071 3.929 11 C -0.259 4.259 12 C -0.095 4.095 13 C -0.190 4.190 14 C -0.030 4.030 15 C -0.122 4.122 16 C 0.324 3.676 17 O -0.463 6.463 18 N -0.389 5.389 19 C -0.006 4.006 20 C -0.122 4.122 21 C 0.000 4.000 22 C -0.169 4.169 23 C -0.041 4.041 24 O -0.317 6.317 25 C -0.011 4.011 26 C -0.201 4.201 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 30.800 -10.736 -4.334 32.905 hybrid contribution -1.091 0.689 -0.343 1.335 sum 29.709 -10.047 -4.677 31.709 Atomic orbital electron populations 1.69731 1.06827 1.29591 1.50263 1.25285 0.95925 1.02124 0.95537 0.85227 0.78879 0.77473 0.79168 1.19436 1.18698 1.18681 1.20725 0.78108 0.96171 1.52672 0.90218 1.83504 1.21273 1.27357 1.83313 1.19578 0.93023 0.85226 0.95108 1.21333 1.00222 0.93398 1.10975 1.21121 0.95384 0.96353 0.96612 1.21002 0.93322 0.98359 1.06267 1.19220 0.95234 0.91732 0.96801 1.20610 0.91360 1.07681 0.92540 1.20648 0.80572 0.74945 0.91461 1.90762 1.49502 1.51472 1.54592 1.50280 1.04193 1.73002 1.11386 1.23238 0.87418 1.02161 0.87782 1.22929 0.95525 0.96328 0.97406 1.23474 0.77591 1.02985 0.95945 1.22776 0.91490 0.98220 1.04390 1.23711 0.98115 0.86761 0.95483 1.89193 1.18094 1.55919 1.68494 1.23126 0.82589 0.93317 1.02061 1.20253 0.90716 0.98869 1.10300 0.90535 0.87366 0.84010 0.83438 0.84235 0.86106 0.91438 0.87351 0.86084 0.88320 0.88152 0.87968 0.87553 0.91827 0.89310 0.91974 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.06 13.96 21.62 0.30 -56.75 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 47.49 28.62 68.60 1.96 49.45 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.40 -24.85 9.95 67.92 0.68 -24.18 16 8 H 0.08 5.17 5.44 -2.91 -0.02 5.16 16 9 O -0.25 -14.29 8.59 -22.70 -0.19 -14.49 16 10 C 0.12 6.06 6.65 22.58 0.15 6.21 16 11 C -0.24 -11.41 9.17 22.39 0.21 -11.21 16 12 C -0.08 -2.87 10.04 22.25 0.22 -2.65 16 13 C -0.17 -5.57 9.70 22.30 0.22 -5.36 16 14 C -0.03 -0.98 4.37 -19.88 -0.09 -1.07 16 15 C -0.08 -1.85 5.57 29.10 0.16 -1.68 16 16 C 0.53 14.26 8.05 87.65 0.71 14.97 16 17 O -0.58 -22.75 16.76 -3.03 -0.05 -22.80 16 18 N -0.65 -11.55 3.62 -856.66 -3.10 -14.65 16 19 C 0.12 1.60 8.06 86.03 0.69 2.29 16 20 C -0.12 -1.14 1.21 -51.95 -0.06 -1.20 16 21 C 0.12 1.02 7.77 86.03 0.67 1.69 16 22 C -0.13 -0.59 6.60 31.33 0.21 -0.38 16 23 C 0.04 0.29 7.66 72.59 0.56 0.84 16 24 O -0.40 -6.23 11.66 -148.98 -1.74 -7.96 16 25 C 0.07 0.92 7.08 72.22 0.51 1.43 16 26 C -0.18 -7.69 9.65 22.39 0.22 -7.47 16 27 H 0.29 16.10 8.31 -92.71 -0.77 15.33 16 28 H 0.11 5.58 5.64 -2.91 -0.02 5.56 16 29 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 30 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.14 1.98 8.09 -2.39 -0.02 1.96 16 32 H 0.12 2.19 8.08 -2.39 -0.02 2.17 16 33 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 34 H 0.11 1.07 8.13 -2.39 -0.02 1.05 16 35 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.10 0.70 8.04 -2.39 -0.02 0.68 16 37 H 0.10 0.19 7.97 -2.39 -0.02 0.17 16 38 H 0.10 0.15 7.97 -2.39 -0.02 0.13 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.09 1.36 7.91 -2.39 -0.02 1.34 16 42 H 0.06 0.92 8.08 -2.38 -0.02 0.90 16 43 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -83.40 361.86 3.71 -79.69 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.02 Total: 14.24 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 5.51 Total: -26.74 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -2.80 Total: -71.40 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.98 Total: -45.25 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.96 Total: 49.45 kcal Total: -83.40 3.71 -79.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819392105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.909 kcal (2) G-P(sol) polarization free energy of solvation -83.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds