Wall clock time and date at job start Tue Mar 31 2020 11:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86800 * 119.99831 * 2 1 4 4 H 1.48501 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46781 * 299.99403 * 3 2 1 6 6 H 1.48498 * 109.47344 * 59.99369 * 3 2 1 7 7 C 1.38658 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00017 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.35745 * 116.99978 * 174.96125 * 9 7 2 11 11 C 1.38952 * 120.03379 * 5.36306 * 10 9 7 12 12 C 1.38127 * 120.07221 * 179.97438 * 11 10 9 13 13 C 1.38196 * 120.13907 * 359.72049 * 12 11 10 14 14 C 1.38926 * 120.06287 * 0.55220 * 13 12 11 15 15 N 1.39926 * 120.03451 * 179.72055 * 14 13 12 16 16 C 1.34780 * 119.99997 * 214.85031 * 15 14 13 17 17 O 1.21284 * 120.00115 * 355.48883 * 16 15 14 18 18 C 1.50699 * 119.99846 * 175.49217 * 16 15 14 19 19 C 1.53000 * 109.47145 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47419 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.47585 * 179.97438 * 20 19 18 22 22 O 1.20764 * 119.99378 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.00329 * 179.97438 * 21 20 19 24 24 C 1.52997 * 117.49669 * 223.62300 * 23 21 20 25 25 C 1.52995 * 117.49667 * 155.00192 * 23 21 20 26 26 C 1.38729 * 120.03388 * 185.33918 * 10 9 7 27 27 H 0.96996 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.96443 * 359.95375 * 11 10 9 29 29 H 1.08004 * 119.92929 * 180.02562 * 12 11 10 30 30 H 1.07994 * 119.97329 * 180.30418 * 13 12 11 31 31 H 0.97001 * 119.99979 * 34.85066 * 15 14 13 32 32 H 1.09001 * 109.47015 * 59.99758 * 18 16 15 33 33 H 1.09003 * 109.46984 * 299.99751 * 18 16 15 34 34 H 1.09001 * 109.47070 * 59.99595 * 19 18 16 35 35 H 1.09003 * 109.46811 * 299.99654 * 19 18 16 36 36 H 1.09000 * 109.47146 * 300.00117 * 20 19 18 37 37 H 1.09001 * 109.46827 * 59.99503 * 20 19 18 38 38 H 1.09000 * 115.54910 * 9.33454 * 23 21 20 39 39 H 1.09000 * 117.50212 * 0.02562 * 24 23 21 40 40 H 1.09004 * 117.49348 * 145.01858 * 24 23 21 41 41 H 1.09001 * 117.49452 * 214.98037 * 25 23 21 42 42 H 1.08995 * 117.49975 * 359.97438 * 25 23 21 43 43 H 1.07996 * 120.07273 * 0.04425 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8908 2.3963 -1.2126 6 1 1.8907 2.3966 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5046 -0.1052 11 6 3.4580 -3.4383 -0.0948 12 6 4.2070 -4.5939 -0.2018 13 6 3.5791 -5.8199 -0.3136 14 6 2.1918 -5.8923 -0.3302 15 7 1.5567 -7.1335 -0.4493 16 6 0.4021 -7.2364 -1.1370 17 8 -0.1290 -6.2414 -1.5827 18 6 -0.2289 -8.5880 -1.3519 19 6 -1.5203 -8.4258 -2.1562 20 6 -2.1606 -9.7980 -2.3750 21 6 -3.4329 -9.6382 -3.1667 22 8 -3.7903 -8.5401 -3.5199 23 6 -4.2585 -10.8488 -3.5185 24 6 -4.8095 -10.9383 -4.9430 25 6 -5.7514 -10.6351 -3.7762 26 6 1.4367 -4.7332 -0.2231 27 1 -0.4850 0.8400 -0.0004 28 1 3.9516 -2.4820 -0.0034 29 1 5.2856 -4.5396 -0.1931 30 1 4.1673 -6.7221 -0.3921 31 1 1.9474 -7.9198 -0.0370 32 1 -0.4559 -9.0406 -0.3866 33 1 0.4621 -9.2285 -1.9000 34 1 -1.2928 -7.9733 -3.1214 35 1 -2.2114 -7.7851 -1.6084 36 1 -1.4693 -10.4383 -2.9229 37 1 -2.3880 -10.2508 -1.4099 38 1 -3.9593 -11.7787 -3.0349 39 1 -4.5745 -10.1219 -5.6259 40 1 -4.8726 -11.9274 -5.3969 41 1 -6.4343 -11.4246 -3.4623 42 1 -6.1365 -9.6190 -3.6907 43 1 0.3581 -4.7874 -0.2317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822562252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:45 Heat of formation + Delta-G solvation = -55.043692 kcal Electronic energy + Delta-G solvation = -24721.294784 eV Core-core repulsion = 20926.155096 eV Total energy + Delta-G solvation = -3795.139688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33111 -39.99145 -38.58640 -36.64280 -36.42408 -34.43677 -34.02508 -32.20448 -30.08700 -29.17205 -28.14211 -25.41288 -25.04713 -22.86345 -22.66052 -21.67156 -21.08783 -20.04981 -19.53111 -18.18411 -17.47713 -16.98365 -16.59102 -16.22812 -15.54848 -15.45907 -15.07640 -15.01821 -14.76162 -14.24913 -14.14638 -13.79193 -13.48231 -13.39419 -13.06515 -12.83190 -12.45284 -12.27813 -12.18079 -11.95052 -11.70929 -11.61134 -11.45251 -11.16748 -11.06851 -10.99432 -10.96759 -10.88667 -10.74460 -10.40428 -9.88564 -9.71534 -9.60560 -9.11636 -8.78083 -7.66191 -7.14776 -6.37914 -3.97196 1.61029 2.05121 2.37700 2.90778 3.16633 3.17205 3.22498 3.24332 3.43666 3.61212 4.02284 4.34357 4.47922 4.52479 4.61045 4.63859 4.77788 4.80008 4.91341 5.15216 5.17517 5.18179 5.23150 5.30846 5.35039 5.45154 5.52966 5.63397 5.65607 5.68558 5.86189 5.95558 6.13115 6.22601 6.28165 6.42759 6.74556 6.92466 7.07690 7.12517 7.30358 7.38371 7.52063 7.74497 7.84134 8.06909 8.42320 9.06838 9.78609 10.80091 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.002299 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.809143 B =12176.512548 C =13750.852017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.166 3.834 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.237 4.237 14 C 0.174 3.826 15 N -0.672 5.672 16 C 0.501 3.499 17 O -0.505 6.505 18 C -0.136 4.136 19 C -0.100 4.100 20 C -0.164 4.164 21 C 0.379 3.621 22 O -0.445 6.445 23 C -0.224 4.224 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.188 4.188 27 H 0.269 0.731 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.405 0.595 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 -25.467 -3.695 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.111 3.889 11 C -0.265 4.265 12 C -0.078 4.078 13 C -0.258 4.258 14 C 0.081 3.919 15 N -0.318 5.318 16 C 0.288 3.712 17 O -0.379 6.379 18 C -0.176 4.176 19 C -0.138 4.138 20 C -0.201 4.201 21 C 0.254 3.746 22 O -0.318 6.318 23 C -0.243 4.243 24 C -0.189 4.189 25 C -0.191 4.191 26 C -0.209 4.209 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.240 0.760 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.434 -23.959 -4.219 24.568 hybrid contribution 0.893 0.169 0.304 0.959 sum -2.541 -23.790 -3.914 24.243 Atomic orbital electron populations 1.70067 1.05963 1.27516 1.45936 1.25318 0.95845 0.98856 0.96633 0.85636 0.79093 0.80391 0.78205 1.19096 1.20153 1.20191 1.21396 0.91832 0.80795 1.52754 0.88939 1.83994 1.34260 1.11346 1.78069 1.19153 0.90028 0.87888 0.91786 1.21182 0.93755 0.99074 1.12532 1.20498 0.98352 0.91727 0.97246 1.20265 0.91893 0.97680 1.15959 1.17208 0.90888 0.84123 0.99704 1.43438 1.24623 1.09802 1.53899 1.20810 0.80675 0.91761 0.77986 1.90823 1.60763 1.38369 1.47906 1.21656 0.98417 0.94894 1.02669 1.21186 0.95253 0.95497 1.01885 1.22061 0.96285 1.00052 1.01708 1.23790 0.85954 0.88337 0.76540 1.90458 1.68901 1.28328 1.44128 1.22903 0.97872 1.00701 1.02809 1.22944 1.02441 1.03779 0.89689 1.22967 0.90293 1.04043 1.01784 1.20179 1.00624 0.89250 1.10852 0.92077 0.85473 0.87090 0.87443 0.76045 0.88739 0.88765 0.90363 0.90253 0.88258 0.88254 0.85757 0.88016 0.87805 0.87875 0.87715 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.35 13.67 55.48 0.76 -25.59 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.39 -11.40 9.49 30.89 0.29 -11.10 16 8 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 9 O -0.17 -5.27 9.76 0.05 0.00 -5.27 16 10 C 0.17 4.31 6.64 -39.14 -0.26 4.05 16 11 C -0.25 -5.55 9.17 -39.36 -0.36 -5.91 16 12 C -0.06 -1.11 10.03 -39.64 -0.40 -1.50 16 13 C -0.24 -4.12 9.96 -39.34 -0.39 -4.51 16 14 C 0.17 3.31 6.30 -83.72 -0.53 2.79 16 15 N -0.67 -9.61 5.34 -9.88 -0.05 -9.67 16 16 C 0.50 7.59 7.67 -10.98 -0.08 7.50 16 17 O -0.51 -10.59 13.42 5.55 0.07 -10.52 16 18 C -0.14 -1.25 5.70 -27.88 -0.16 -1.41 16 19 C -0.10 -1.10 3.79 -26.73 -0.10 -1.20 16 20 C -0.16 -1.15 5.64 -27.89 -0.16 -1.31 16 21 C 0.38 3.59 6.92 -29.04 -0.20 3.39 16 22 O -0.45 -6.25 16.05 6.00 0.10 -6.15 16 23 C -0.22 -1.51 6.13 -91.78 -0.56 -2.07 16 24 C -0.15 -0.98 10.14 -26.73 -0.27 -1.25 16 25 C -0.15 -1.05 10.05 -26.73 -0.27 -1.32 16 26 C -0.19 -4.46 8.64 -39.21 -0.34 -4.80 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.13 2.85 5.63 -52.49 -0.30 2.55 16 29 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.40 3.90 8.82 -40.82 -0.36 3.54 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.04 8.06 -51.93 -0.42 0.63 16 35 H 0.08 1.07 8.06 -51.93 -0.42 0.66 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.89 7.89 -51.93 -0.41 0.48 16 43 H 0.13 3.41 6.23 -52.49 -0.33 3.08 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -37.76 370.31 -8.31 -46.08 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.86 Total: 7.02 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.88 Total: -17.68 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.71 Total: -35.25 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.17 Total: -21.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.76 -8.31 -46.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822562252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.968 kcal (2) G-P(sol) polarization free energy of solvation -37.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds