Wall clock time and date at job start Tue Mar 31 2020 11:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86800 * 119.99831 * 2 1 4 4 H 1.48501 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46781 * 299.99403 * 3 2 1 6 6 H 1.48498 * 109.47344 * 59.99369 * 3 2 1 7 7 C 1.38658 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00017 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.35745 * 116.99978 * 174.96125 * 9 7 2 11 11 C 1.38952 * 120.03379 * 5.36306 * 10 9 7 12 12 C 1.38127 * 120.07221 * 179.97438 * 11 10 9 13 13 C 1.38196 * 120.13907 * 359.72049 * 12 11 10 14 14 C 1.38926 * 120.06287 * 0.55220 * 13 12 11 15 15 N 1.39926 * 120.03451 * 179.72055 * 14 13 12 16 16 C 1.34780 * 119.99997 * 214.85031 * 15 14 13 17 17 O 1.21284 * 120.00115 * 355.48883 * 16 15 14 18 18 C 1.50699 * 119.99846 * 175.49217 * 16 15 14 19 19 C 1.53000 * 109.47145 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47419 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.47585 * 179.97438 * 20 19 18 22 22 O 1.20764 * 119.99378 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.00329 * 179.97438 * 21 20 19 24 24 C 1.52997 * 117.49669 * 223.62300 * 23 21 20 25 25 C 1.52995 * 117.49667 * 155.00192 * 23 21 20 26 26 C 1.38729 * 120.03388 * 185.33918 * 10 9 7 27 27 H 0.96996 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.96443 * 359.95375 * 11 10 9 29 29 H 1.08004 * 119.92929 * 180.02562 * 12 11 10 30 30 H 1.07994 * 119.97329 * 180.30418 * 13 12 11 31 31 H 0.97001 * 119.99979 * 34.85066 * 15 14 13 32 32 H 1.09001 * 109.47015 * 59.99758 * 18 16 15 33 33 H 1.09003 * 109.46984 * 299.99751 * 18 16 15 34 34 H 1.09001 * 109.47070 * 59.99595 * 19 18 16 35 35 H 1.09003 * 109.46811 * 299.99654 * 19 18 16 36 36 H 1.09000 * 109.47146 * 300.00117 * 20 19 18 37 37 H 1.09001 * 109.46827 * 59.99503 * 20 19 18 38 38 H 1.09000 * 115.54910 * 9.33454 * 23 21 20 39 39 H 1.09000 * 117.50212 * 0.02562 * 24 23 21 40 40 H 1.09004 * 117.49348 * 145.01858 * 24 23 21 41 41 H 1.09001 * 117.49452 * 214.98037 * 25 23 21 42 42 H 1.08995 * 117.49975 * 359.97438 * 25 23 21 43 43 H 1.07996 * 120.07273 * 0.04425 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8908 2.3963 -1.2126 6 1 1.8907 2.3966 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5046 -0.1052 11 6 3.4580 -3.4383 -0.0948 12 6 4.2070 -4.5939 -0.2018 13 6 3.5791 -5.8199 -0.3136 14 6 2.1918 -5.8923 -0.3302 15 7 1.5567 -7.1335 -0.4493 16 6 0.4021 -7.2364 -1.1370 17 8 -0.1290 -6.2414 -1.5827 18 6 -0.2289 -8.5880 -1.3519 19 6 -1.5203 -8.4258 -2.1562 20 6 -2.1606 -9.7980 -2.3750 21 6 -3.4329 -9.6382 -3.1667 22 8 -3.7903 -8.5401 -3.5199 23 6 -4.2585 -10.8488 -3.5185 24 6 -4.8095 -10.9383 -4.9430 25 6 -5.7514 -10.6351 -3.7762 26 6 1.4367 -4.7332 -0.2231 27 1 -0.4850 0.8400 -0.0004 28 1 3.9516 -2.4820 -0.0034 29 1 5.2856 -4.5396 -0.1931 30 1 4.1673 -6.7221 -0.3921 31 1 1.9474 -7.9198 -0.0370 32 1 -0.4559 -9.0406 -0.3866 33 1 0.4621 -9.2285 -1.9000 34 1 -1.2928 -7.9733 -3.1214 35 1 -2.2114 -7.7851 -1.6084 36 1 -1.4693 -10.4383 -2.9229 37 1 -2.3880 -10.2508 -1.4099 38 1 -3.9593 -11.7787 -3.0349 39 1 -4.5745 -10.1219 -5.6259 40 1 -4.8726 -11.9274 -5.3969 41 1 -6.4343 -11.4246 -3.4623 42 1 -6.1365 -9.6190 -3.6907 43 1 0.3581 -4.7874 -0.2317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822562252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:45 Heat of formation + Delta-G solvation = -82.217336 kcal Electronic energy + Delta-G solvation = -24722.473122 eV Core-core repulsion = 20926.155096 eV Total energy + Delta-G solvation = -3796.318026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59108 -40.92925 -40.32291 -38.27774 -37.11891 -35.54055 -35.31967 -34.28285 -31.43509 -30.65396 -29.45688 -27.37204 -26.04387 -23.99265 -23.37313 -23.15879 -22.36491 -21.25217 -20.23741 -19.96874 -19.15503 -18.17623 -17.53823 -17.16481 -17.09380 -16.75686 -16.30633 -16.20621 -15.97324 -15.75655 -15.54306 -15.41520 -14.85297 -14.66958 -14.35046 -14.23555 -13.66753 -13.62110 -13.26320 -13.09184 -12.91329 -12.82263 -12.68363 -12.48743 -12.43039 -12.36743 -12.09907 -11.75397 -11.56656 -11.46401 -11.44340 -11.26408 -10.79251 -10.78489 -10.49938 -9.35506 -8.88051 -8.48869 -6.18968 0.42279 0.69153 0.90681 1.32025 1.41838 1.52530 1.65904 2.04846 2.18940 2.81439 2.90433 2.96063 3.15826 3.44142 3.71472 3.83371 3.95027 4.00379 4.07060 4.10781 4.14122 4.23286 4.35328 4.41894 4.64056 4.65445 4.66187 4.69584 4.74021 4.75063 4.82237 4.97406 5.06511 5.09198 5.12308 5.13986 5.16426 5.35156 5.42586 5.48432 5.62449 5.73148 6.01347 6.21261 6.52880 6.62401 6.94559 7.26812 7.78185 8.75501 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.002299 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.809143 B =12176.512548 C =13750.852017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.031 4.031 3 Si 1.026 2.974 4 H -0.245 1.245 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.413 4.413 8 H 0.108 0.892 9 O -0.238 6.238 10 C 0.123 3.877 11 C -0.256 4.256 12 C -0.049 4.049 13 C -0.203 4.203 14 C 0.182 3.818 15 N -0.654 5.654 16 C 0.491 3.509 17 O -0.576 6.576 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.152 4.152 21 C 0.370 3.630 22 O -0.510 6.510 23 C -0.219 4.219 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.218 4.218 27 H 0.272 0.728 28 H 0.123 0.877 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.434 0.566 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.165 0.835 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.075 0.925 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -30.545 -3.228 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.227 4.227 3 Si 0.845 3.155 4 H -0.168 1.168 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.125 0.875 9 O -0.145 6.145 10 C 0.072 3.928 11 C -0.276 4.276 12 C -0.068 4.068 13 C -0.223 4.223 14 C 0.087 3.913 15 N -0.302 5.302 16 C 0.281 3.719 17 O -0.454 6.454 18 C -0.157 4.157 19 C -0.141 4.141 20 C -0.189 4.189 21 C 0.250 3.750 22 O -0.387 6.387 23 C -0.237 4.237 24 C -0.188 4.188 25 C -0.201 4.201 26 C -0.240 4.240 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.179 0.821 30 H 0.186 0.814 31 H 0.275 0.725 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.183 0.817 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.093 0.907 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.506 -29.176 -3.724 29.417 hybrid contribution -0.239 1.375 0.120 1.401 sum 0.267 -27.801 -3.604 28.035 Atomic orbital electron populations 1.70243 1.08382 1.28750 1.49142 1.26786 0.96908 1.03200 0.95849 0.84434 0.78364 0.74209 0.78513 1.16822 1.19537 1.19145 1.21978 0.92725 0.81250 1.52992 0.87509 1.83961 1.36337 1.12785 1.81396 1.19733 0.91875 0.87427 0.93782 1.21329 0.92358 1.00872 1.13060 1.21071 1.00610 0.90446 0.94659 1.20932 0.90963 0.99498 1.10903 1.17402 0.91881 0.84507 0.97517 1.43383 1.24341 1.08981 1.53484 1.22113 0.80045 0.93389 0.76327 1.90832 1.62512 1.41421 1.50627 1.21732 0.97439 0.91364 1.05121 1.21112 0.95945 0.97320 0.99673 1.22106 0.95264 0.97870 1.03660 1.24646 0.86853 0.88273 0.75258 1.90460 1.70574 1.30880 1.46832 1.23055 0.96948 1.00704 1.03032 1.23008 1.02004 1.04417 0.89351 1.23012 0.91098 1.03348 1.02641 1.20218 0.99468 0.90956 1.13372 0.91903 0.85968 0.82121 0.81420 0.72548 0.84445 0.84014 0.94161 0.94528 0.84297 0.84523 0.81735 0.90391 0.84881 0.85273 0.90678 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.33 13.67 21.61 0.30 -61.04 16 2 C -0.03 -1.88 5.49 84.83 0.47 -1.41 16 3 Si 1.03 45.32 29.55 68.60 2.03 47.34 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.41 -25.75 9.49 67.92 0.64 -25.11 16 8 H 0.11 6.00 5.20 -2.91 -0.02 5.98 16 9 O -0.24 -15.83 9.76 -22.73 -0.22 -16.05 16 10 C 0.12 6.79 6.64 22.56 0.15 6.94 16 11 C -0.26 -11.65 9.17 22.41 0.21 -11.44 16 12 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 13 C -0.20 -6.02 9.96 22.42 0.22 -5.79 16 14 C 0.18 6.63 6.30 38.14 0.24 6.87 16 15 N -0.65 -16.77 5.34 -303.55 -1.62 -18.39 16 16 C 0.49 14.50 7.67 87.66 0.67 15.18 16 17 O -0.58 -26.00 13.42 -3.04 -0.04 -26.04 16 18 C -0.12 -1.74 5.70 29.85 0.17 -1.57 16 19 C -0.10 -2.22 3.79 30.59 0.12 -2.11 16 20 C -0.15 -1.68 5.64 29.85 0.17 -1.51 16 21 C 0.37 6.88 6.92 29.10 0.20 7.08 16 22 O -0.51 -15.76 16.05 -1.46 -0.02 -15.78 16 23 C -0.22 -2.47 6.13 -11.54 -0.07 -2.54 16 24 C -0.15 -1.79 10.14 30.59 0.31 -1.48 16 25 C -0.16 -2.15 10.05 30.59 0.31 -1.84 16 26 C -0.22 -11.02 8.64 22.51 0.19 -10.82 16 27 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 28 H 0.12 5.56 5.63 -2.91 -0.02 5.54 16 29 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 30 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.43 5.89 8.82 -92.71 -0.82 5.07 16 32 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 35 H 0.04 1.08 8.06 -2.39 -0.02 1.06 16 36 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.14 0.58 8.14 -2.39 -0.02 0.57 16 38 H 0.17 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.43 7.89 -2.39 -0.02 1.41 16 43 H 0.10 5.49 6.23 -2.91 -0.02 5.47 16 Total: -1.00 -101.49 370.31 4.86 -96.63 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.22 Total: 24.31 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 4.22 Total: -30.99 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.32 Total: -79.42 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -0.29 Total: -57.87 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -101.49 4.86 -96.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822562252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.409 kcal (2) G-P(sol) polarization free energy of solvation -101.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds