Wall clock time and date at job start Tue Mar 31 2020 11:09:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86795 * 120.00250 * 2 1
4 4 H 1.48501 * 109.47232 * 240.00225 * 3 2 1
5 5 H 1.48505 * 109.46806 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.47270 * 119.99935 * 3 2 1
7 7 C 1.37875 * 119.99911 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99996 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00172 * 0.02562 * 7 2 1
10 10 C 1.53123 * 109.52672 * 180.02562 * 9 7 2
11 11 C 1.53029 * 109.28149 * 177.55735 * 10 9 7
12 12 N 1.46849 * 109.52267 * 300.82211 * 11 10 9
13 13 C 1.39467 * 110.99983 * 185.83832 * 12 11 10
14 14 C 1.38792 * 120.12310 * 300.02084 * 13 12 11
15 15 C 1.38144 * 120.09010 * 179.97438 * 14 13 12
16 16 C 1.38359 * 120.34488 * 359.95831 * 15 14 13
17 17 C 1.38271 * 120.24651 * 359.78198 * 16 15 14
18 18 F 1.35108 * 120.04700 * 180.25482 * 17 16 15
19 19 C 1.39458 * 119.90419 * 0.49241 * 17 16 15
20 20 C 1.48341 * 120.17077 * 179.76481 * 19 17 16
21 21 N 1.34081 * 126.68117 * 179.76598 * 20 19 17
22 22 N 1.28980 * 107.26305 * 179.97438 * 21 20 19
23 23 N 1.28728 * 108.95928 * 359.97438 * 22 21 20
24 24 H 0.97004 * 125.33732 * 180.02562 * 23 22 21
25 25 N 1.28870 * 109.32510 * 0.02562 * 23 22 21
26 26 C 1.46839 * 111.20293 * 61.74154 * 12 11 10
27 27 C 1.53042 * 109.52223 * 298.25878 * 26 12 11
28 28 H 0.96998 * 120.00292 * 0.02562 * 1 2 3
29 29 H 1.08994 * 109.57654 * 59.84089 * 9 7 2
30 30 H 1.09003 * 109.50249 * 57.61452 * 10 9 7
31 31 H 1.08994 * 109.50096 * 297.49798 * 10 9 7
32 32 H 1.08998 * 109.46575 * 180.80134 * 11 10 9
33 33 H 1.08998 * 109.46569 * 60.83360 * 11 10 9
34 34 H 1.07997 * 119.95564 * 359.97438 * 14 13 12
35 35 H 1.08000 * 119.82402 * 179.97438 * 15 14 13
36 36 H 1.07994 * 119.87695 * 180.02562 * 16 15 14
37 37 H 1.08999 * 109.46114 * 58.27184 * 26 12 11
38 38 H 1.08999 * 109.46901 * 178.24167 * 26 12 11
39 39 H 1.08999 * 109.50449 * 299.23886 * 27 26 12
40 40 H 1.09003 * 109.50480 * 179.11932 * 27 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2841 2.7464 0.0006
6 1 3.1029 1.6963 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0017
10 6 2.2449 -3.6640 -0.0015
11 6 1.4751 -4.9851 0.0589
12 7 0.6533 -5.0191 1.2755
13 6 0.0397 -6.2620 1.4296
14 6 -0.8274 -6.7363 0.4551
15 6 -1.4345 -7.9677 0.6081
16 6 -1.1829 -8.7364 1.7307
17 6 -0.3174 -8.2800 2.7077
18 9 -0.0706 -9.0362 3.7998
19 6 0.2967 -7.0358 2.5665
20 6 1.2222 -6.5381 3.6135
21 7 1.8829 -5.3714 3.6097
22 7 2.5772 -5.3212 4.6955
23 7 2.3774 -6.3992 5.3700
24 1 2.7826 -6.6087 6.2261
25 7 1.5545 -7.1566 4.7296
26 6 -0.3404 -3.9381 1.2755
27 6 0.3753 -2.5855 1.2515
28 1 -0.4850 0.8400 -0.0004
29 1 0.6219 -2.5569 -0.8899
30 1 2.8991 -3.5839 0.8668
31 1 2.8426 -3.6324 -0.9123
32 1 2.1803 -5.8161 0.0736
33 1 0.8314 -5.0708 -0.8165
34 1 -1.0278 -6.1418 -0.4240
35 1 -2.1088 -8.3324 -0.1526
36 1 -1.6613 -9.6981 1.8424
37 1 -0.9755 -4.0286 0.3943
38 1 -0.9537 -4.0085 2.1738
39 1 1.0001 -2.4886 2.1394
40 1 -0.3627 -1.7835 1.2357
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000826380659.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:09:33
Heat of formation + Delta-G solvation = 118.543299 kcal
Electronic energy + Delta-G solvation = -26849.089069 eV
Core-core repulsion = 23002.601875 eV
Total energy + Delta-G solvation = -3846.487194 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.135 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-48.90032 -44.13450 -39.93923 -37.36483 -34.24608 -33.81994 -33.37793 -31.53164
-30.33874 -29.80642 -28.90169 -25.66037 -24.59528 -24.11671 -22.76792 -22.02139
-21.60134 -21.02218 -19.00142 -18.52279 -17.58119 -16.87665 -16.53302 -16.28191
-16.14076 -15.59217 -15.25027 -14.51737 -14.35497 -14.21240 -13.83540 -13.55338
-13.05706 -12.68148 -12.52205 -12.34373 -12.08190 -12.03743 -11.96700 -11.61187
-11.37207 -11.05034 -10.87900 -10.82919 -10.76841 -10.70380 -10.47634 -10.16167
-9.98250 -9.38483 -8.94915 -8.70120 -8.67202 -8.60233 -8.21891 -7.86214
-5.90828 -3.94996 0.63930 1.06076 1.45013 2.44417 2.54159 3.38156
3.42203 3.45789 3.55048 3.79506 3.90614 4.35385 4.41557 4.51577
4.82939 5.06020 5.16861 5.26865 5.39802 5.44831 5.70428 5.79048
5.82045 5.89908 5.97154 6.00858 6.14156 6.19901 6.31795 6.37122
6.57709 6.63877 6.65268 6.68228 6.93196 7.16983 7.22408 7.52724
7.62915 7.78648 7.89308 8.14615 8.21674 8.49499 8.56304 9.08041
9.68923 11.15522
Molecular weight = 317.13amu
Principal moments of inertia in cm(-1)
A = 0.017384 B = 0.004134 C = 0.003552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1610.244049 B = 6771.947911 C = 7880.473049
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.061 3.939
3 Si 0.888 3.112
4 H -0.279 1.279
5 H -0.289 1.289
6 H -0.278 1.278
7 C -0.507 4.507
8 H 0.054 0.946
9 C 0.050 3.950
10 C -0.104 4.104
11 C 0.071 3.929
12 N -0.491 5.491
13 C 0.175 3.825
14 C -0.166 4.166
15 C -0.063 4.063
16 C -0.171 4.171
17 C 0.137 3.863
18 F -0.124 7.124
19 C -0.042 4.042
20 C 0.217 3.783
21 N -0.197 5.197
22 N -0.064 5.064
23 N -0.241 5.241
24 H 0.470 0.530
25 N -0.297 5.297
26 C 0.070 3.930
27 C -0.102 4.102
28 H 0.259 0.741
29 H 0.020 0.980
30 H 0.063 0.937
31 H 0.050 0.950
32 H 0.057 0.943
33 H 0.029 0.971
34 H 0.137 0.863
35 H 0.135 0.865
36 H 0.139 0.861
37 H 0.028 0.972
38 H 0.054 0.946
39 H 0.050 0.950
40 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.969 -18.087 5.791 19.093
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.139 4.139
3 Si 0.716 3.284
4 H -0.204 1.204
5 H -0.215 1.215
6 H -0.203 1.203
7 C -0.545 4.545
8 H 0.072 0.928
9 C 0.031 3.969
10 C -0.142 4.142
11 C -0.055 4.055
12 N -0.213 5.213
13 C 0.078 3.922
14 C -0.186 4.186
15 C -0.083 4.083
16 C -0.190 4.190
17 C 0.115 3.885
18 F -0.102 7.102
19 C -0.047 4.047
20 C -0.062 4.062
21 N -0.070 5.070
22 N -0.059 5.059
23 N -0.085 5.085
24 H 0.323 0.677
25 N -0.149 5.149
26 C -0.055 4.055
27 C -0.140 4.140
28 H 0.069 0.931
29 H 0.038 0.962
30 H 0.082 0.918
31 H 0.069 0.931
32 H 0.075 0.925
33 H 0.048 0.952
34 H 0.154 0.846
35 H 0.153 0.847
36 H 0.157 0.843
37 H 0.046 0.954
38 H 0.073 0.927
39 H 0.069 0.931
40 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -1.354 -17.409 6.506 18.634
hybrid contribution -0.099 0.164 -0.032 0.194
sum -1.452 -17.245 6.474 18.477
Atomic orbital electron populations
1.69854 1.05830 1.26305 1.51306 1.24936 0.94802 0.98884 0.95282
0.86722 0.79643 0.83441 0.78548 1.20447 1.21472 1.20316 1.21163
0.92858 0.90638 1.49835 0.92821 1.18667 0.92644 0.91729 0.93816
1.21670 0.98789 0.93170 1.00594 1.22159 0.95357 0.99929 0.88054
1.59571 1.23112 0.98934 1.39655 1.18793 0.91289 0.91519 0.90597
1.21886 0.98685 0.97286 1.00752 1.21015 0.97541 0.93363 0.96338
1.21001 1.01033 1.02269 0.94702 1.17467 0.97338 0.88724 0.84980
1.91549 1.92730 1.74472 1.51428 1.17248 0.99703 0.93965 0.93788
1.23153 0.99978 0.90389 0.92694 1.76669 1.05264 1.15929 1.09139
1.79111 1.18342 1.07519 1.00965 1.47774 1.29638 1.10896 1.20163
0.67736 1.75016 1.10176 1.21831 1.07913 1.22320 0.92248 0.92213
0.98760 1.21665 1.00246 0.92188 0.99876 0.93141 0.96225 0.91846
0.93133 0.92483 0.95243 0.84564 0.84697 0.84298 0.95394 0.92745
0.93104 0.88901
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.33 11.37 55.43 0.63 -24.70 16
2 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16
3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16
4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16
8 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16
9 C 0.05 1.22 2.16 -91.64 -0.20 1.02 16
10 C -0.10 -2.19 5.32 -26.65 -0.14 -2.33 16
11 C 0.07 1.26 5.11 -3.84 -0.02 1.24 16
12 N -0.49 -8.75 2.82 -170.94 -0.48 -9.24 16
13 C 0.18 2.70 4.68 -83.55 -0.39 2.31 16
14 C -0.17 -2.09 8.68 -39.41 -0.34 -2.43 16
15 C -0.06 -0.62 10.03 -39.57 -0.40 -1.02 16
16 C -0.17 -1.76 10.01 -39.52 -0.40 -2.16 16
17 C 0.14 1.80 7.27 -39.11 -0.28 1.51 16
18 F -0.12 -1.67 15.83 2.25 0.04 -1.63 16
19 C -0.04 -0.64 5.90 -104.66 -0.62 -1.26 16
20 C 0.22 3.59 7.89 -156.29 -1.23 2.36 16
21 N -0.20 -3.57 10.93 32.14 0.35 -3.22 16
22 N -0.06 -1.00 13.47 60.35 0.81 -0.18 16
23 N -0.24 -2.88 7.90 60.35 0.48 -2.40 16
24 H 0.47 3.12 8.96 -340.35 -3.05 0.07 16
25 N -0.30 -4.27 11.09 32.16 0.36 -3.92 16
26 C 0.07 1.35 5.17 -3.84 -0.02 1.33 16
27 C -0.10 -2.39 5.12 -26.64 -0.14 -2.52 16
28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16
31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16
32 H 0.06 0.95 8.11 -51.93 -0.42 0.52 16
33 H 0.03 0.50 7.33 -51.93 -0.38 0.12 16
34 H 0.14 1.66 7.12 -52.49 -0.37 1.28 16
35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16
36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16
37 H 0.03 0.53 7.55 -51.93 -0.39 0.13 16
38 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16
39 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16
40 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16
LS Contribution 333.56 15.07 5.03 5.03
Total: -1.00 -31.33 333.56 -9.82 -41.15
By element:
Atomic # 1 Polarization: 4.65 SS G_CDS: -7.44 Total: -2.79 kcal
Atomic # 6 Polarization: -9.96 SS G_CDS: -4.57 Total: -14.52 kcal
Atomic # 7 Polarization: -45.80 SS G_CDS: 2.15 Total: -43.66 kcal
Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -31.33 -9.82 -41.15 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000826380659.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 159.689 kcal
(2) G-P(sol) polarization free energy of solvation -31.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.359 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) 118.543 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds