Wall clock time and date at job start Tue Mar 31 2020 11:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48501 * 109.47232 * 240.00225 * 3 2 1 5 5 H 1.48505 * 109.46806 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47270 * 119.99935 * 3 2 1 7 7 C 1.37875 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.53123 * 109.52672 * 180.02562 * 9 7 2 11 11 C 1.53029 * 109.28149 * 177.55735 * 10 9 7 12 12 N 1.46849 * 109.52267 * 300.82211 * 11 10 9 13 13 C 1.39467 * 110.99983 * 185.83832 * 12 11 10 14 14 C 1.38792 * 120.12310 * 300.02084 * 13 12 11 15 15 C 1.38144 * 120.09010 * 179.97438 * 14 13 12 16 16 C 1.38359 * 120.34488 * 359.95831 * 15 14 13 17 17 C 1.38271 * 120.24651 * 359.78198 * 16 15 14 18 18 F 1.35108 * 120.04700 * 180.25482 * 17 16 15 19 19 C 1.39458 * 119.90419 * 0.49241 * 17 16 15 20 20 C 1.48341 * 120.17077 * 179.76481 * 19 17 16 21 21 N 1.34081 * 126.68117 * 179.76598 * 20 19 17 22 22 N 1.28980 * 107.26305 * 179.97438 * 21 20 19 23 23 N 1.28728 * 108.95928 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.33732 * 180.02562 * 23 22 21 25 25 N 1.28870 * 109.32510 * 0.02562 * 23 22 21 26 26 C 1.46839 * 111.20293 * 61.74154 * 12 11 10 27 27 C 1.53042 * 109.52223 * 298.25878 * 26 12 11 28 28 H 0.96998 * 120.00292 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.57654 * 59.84089 * 9 7 2 30 30 H 1.09003 * 109.50249 * 57.61452 * 10 9 7 31 31 H 1.08994 * 109.50096 * 297.49798 * 10 9 7 32 32 H 1.08998 * 109.46575 * 180.80134 * 11 10 9 33 33 H 1.08998 * 109.46569 * 60.83360 * 11 10 9 34 34 H 1.07997 * 119.95564 * 359.97438 * 14 13 12 35 35 H 1.08000 * 119.82402 * 179.97438 * 15 14 13 36 36 H 1.07994 * 119.87695 * 180.02562 * 16 15 14 37 37 H 1.08999 * 109.46114 * 58.27184 * 26 12 11 38 38 H 1.08999 * 109.46901 * 178.24167 * 26 12 11 39 39 H 1.08999 * 109.50449 * 299.23886 * 27 26 12 40 40 H 1.09003 * 109.50480 * 179.11932 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2449 -3.6640 -0.0015 11 6 1.4751 -4.9851 0.0589 12 7 0.6533 -5.0191 1.2755 13 6 0.0397 -6.2620 1.4296 14 6 -0.8274 -6.7363 0.4551 15 6 -1.4345 -7.9677 0.6081 16 6 -1.1829 -8.7364 1.7307 17 6 -0.3174 -8.2800 2.7077 18 9 -0.0706 -9.0362 3.7998 19 6 0.2967 -7.0358 2.5665 20 6 1.2222 -6.5381 3.6135 21 7 1.8829 -5.3714 3.6097 22 7 2.5772 -5.3212 4.6955 23 7 2.3774 -6.3992 5.3700 24 1 2.7826 -6.6087 6.2261 25 7 1.5545 -7.1566 4.7296 26 6 -0.3404 -3.9381 1.2755 27 6 0.3753 -2.5855 1.2515 28 1 -0.4850 0.8400 -0.0004 29 1 0.6219 -2.5569 -0.8899 30 1 2.8991 -3.5839 0.8668 31 1 2.8426 -3.6324 -0.9123 32 1 2.1803 -5.8161 0.0736 33 1 0.8314 -5.0708 -0.8165 34 1 -1.0278 -6.1418 -0.4240 35 1 -2.1088 -8.3324 -0.1526 36 1 -1.6613 -9.6981 1.8424 37 1 -0.9755 -4.0286 0.3943 38 1 -0.9537 -4.0085 2.1738 39 1 1.0001 -2.4886 2.1394 40 1 -0.3627 -1.7835 1.2357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826380659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:33 Heat of formation + Delta-G solvation = 118.543299 kcal Electronic energy + Delta-G solvation = -26849.089069 eV Core-core repulsion = 23002.601875 eV Total energy + Delta-G solvation = -3846.487194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.90032 -44.13450 -39.93923 -37.36483 -34.24608 -33.81994 -33.37793 -31.53164 -30.33874 -29.80642 -28.90169 -25.66037 -24.59528 -24.11671 -22.76792 -22.02139 -21.60134 -21.02218 -19.00142 -18.52279 -17.58119 -16.87665 -16.53302 -16.28191 -16.14076 -15.59217 -15.25027 -14.51737 -14.35497 -14.21240 -13.83540 -13.55338 -13.05706 -12.68148 -12.52205 -12.34373 -12.08190 -12.03743 -11.96700 -11.61187 -11.37207 -11.05034 -10.87900 -10.82919 -10.76841 -10.70380 -10.47634 -10.16167 -9.98250 -9.38483 -8.94915 -8.70120 -8.67202 -8.60233 -8.21891 -7.86214 -5.90828 -3.94996 0.63930 1.06076 1.45013 2.44417 2.54159 3.38156 3.42203 3.45789 3.55048 3.79506 3.90614 4.35385 4.41557 4.51577 4.82939 5.06020 5.16861 5.26865 5.39802 5.44831 5.70428 5.79048 5.82045 5.89908 5.97154 6.00858 6.14156 6.19901 6.31795 6.37122 6.57709 6.63877 6.65268 6.68228 6.93196 7.16983 7.22408 7.52724 7.62915 7.78648 7.89308 8.14615 8.21674 8.49499 8.56304 9.08041 9.68923 11.15522 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.004134 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.244049 B = 6771.947911 C = 7880.473049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.507 4.507 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.104 4.104 11 C 0.071 3.929 12 N -0.491 5.491 13 C 0.175 3.825 14 C -0.166 4.166 15 C -0.063 4.063 16 C -0.171 4.171 17 C 0.137 3.863 18 F -0.124 7.124 19 C -0.042 4.042 20 C 0.217 3.783 21 N -0.197 5.197 22 N -0.064 5.064 23 N -0.241 5.241 24 H 0.470 0.530 25 N -0.297 5.297 26 C 0.070 3.930 27 C -0.102 4.102 28 H 0.259 0.741 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.028 0.972 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -18.087 5.791 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.142 4.142 11 C -0.055 4.055 12 N -0.213 5.213 13 C 0.078 3.922 14 C -0.186 4.186 15 C -0.083 4.083 16 C -0.190 4.190 17 C 0.115 3.885 18 F -0.102 7.102 19 C -0.047 4.047 20 C -0.062 4.062 21 N -0.070 5.070 22 N -0.059 5.059 23 N -0.085 5.085 24 H 0.323 0.677 25 N -0.149 5.149 26 C -0.055 4.055 27 C -0.140 4.140 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.354 -17.409 6.506 18.634 hybrid contribution -0.099 0.164 -0.032 0.194 sum -1.452 -17.245 6.474 18.477 Atomic orbital electron populations 1.69854 1.05830 1.26305 1.51306 1.24936 0.94802 0.98884 0.95282 0.86722 0.79643 0.83441 0.78548 1.20447 1.21472 1.20316 1.21163 0.92858 0.90638 1.49835 0.92821 1.18667 0.92644 0.91729 0.93816 1.21670 0.98789 0.93170 1.00594 1.22159 0.95357 0.99929 0.88054 1.59571 1.23112 0.98934 1.39655 1.18793 0.91289 0.91519 0.90597 1.21886 0.98685 0.97286 1.00752 1.21015 0.97541 0.93363 0.96338 1.21001 1.01033 1.02269 0.94702 1.17467 0.97338 0.88724 0.84980 1.91549 1.92730 1.74472 1.51428 1.17248 0.99703 0.93965 0.93788 1.23153 0.99978 0.90389 0.92694 1.76669 1.05264 1.15929 1.09139 1.79111 1.18342 1.07519 1.00965 1.47774 1.29638 1.10896 1.20163 0.67736 1.75016 1.10176 1.21831 1.07913 1.22320 0.92248 0.92213 0.98760 1.21665 1.00246 0.92188 0.99876 0.93141 0.96225 0.91846 0.93133 0.92483 0.95243 0.84564 0.84697 0.84298 0.95394 0.92745 0.93104 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 11.37 55.43 0.63 -24.70 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 8 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 9 C 0.05 1.22 2.16 -91.64 -0.20 1.02 16 10 C -0.10 -2.19 5.32 -26.65 -0.14 -2.33 16 11 C 0.07 1.26 5.11 -3.84 -0.02 1.24 16 12 N -0.49 -8.75 2.82 -170.94 -0.48 -9.24 16 13 C 0.18 2.70 4.68 -83.55 -0.39 2.31 16 14 C -0.17 -2.09 8.68 -39.41 -0.34 -2.43 16 15 C -0.06 -0.62 10.03 -39.57 -0.40 -1.02 16 16 C -0.17 -1.76 10.01 -39.52 -0.40 -2.16 16 17 C 0.14 1.80 7.27 -39.11 -0.28 1.51 16 18 F -0.12 -1.67 15.83 2.25 0.04 -1.63 16 19 C -0.04 -0.64 5.90 -104.66 -0.62 -1.26 16 20 C 0.22 3.59 7.89 -156.29 -1.23 2.36 16 21 N -0.20 -3.57 10.93 32.14 0.35 -3.22 16 22 N -0.06 -1.00 13.47 60.35 0.81 -0.18 16 23 N -0.24 -2.88 7.90 60.35 0.48 -2.40 16 24 H 0.47 3.12 8.96 -340.35 -3.05 0.07 16 25 N -0.30 -4.27 11.09 32.16 0.36 -3.92 16 26 C 0.07 1.35 5.17 -3.84 -0.02 1.33 16 27 C -0.10 -2.39 5.12 -26.64 -0.14 -2.52 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.95 8.11 -51.93 -0.42 0.52 16 33 H 0.03 0.50 7.33 -51.93 -0.38 0.12 16 34 H 0.14 1.66 7.12 -52.49 -0.37 1.28 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.03 0.53 7.55 -51.93 -0.39 0.13 16 38 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 39 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -31.33 333.56 -9.82 -41.15 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.44 Total: -2.79 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -4.57 Total: -14.52 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 2.15 Total: -43.66 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.33 -9.82 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826380659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.689 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds