Wall clock time and date at job start Tue Mar 31 2020 11:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48501 * 109.47232 * 240.00225 * 3 2 1 5 5 H 1.48505 * 109.46806 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47270 * 119.99935 * 3 2 1 7 7 C 1.37875 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.53123 * 109.52672 * 180.02562 * 9 7 2 11 11 C 1.53029 * 109.28149 * 177.55735 * 10 9 7 12 12 N 1.46849 * 109.52267 * 300.82211 * 11 10 9 13 13 C 1.39467 * 110.99983 * 185.83832 * 12 11 10 14 14 C 1.38792 * 120.12310 * 300.02084 * 13 12 11 15 15 C 1.38144 * 120.09010 * 179.97438 * 14 13 12 16 16 C 1.38359 * 120.34488 * 359.95831 * 15 14 13 17 17 C 1.38271 * 120.24651 * 359.78198 * 16 15 14 18 18 F 1.35108 * 120.04700 * 180.25482 * 17 16 15 19 19 C 1.39458 * 119.90419 * 0.49241 * 17 16 15 20 20 C 1.48341 * 120.17077 * 179.76481 * 19 17 16 21 21 N 1.34081 * 126.68117 * 179.76598 * 20 19 17 22 22 N 1.28980 * 107.26305 * 179.97438 * 21 20 19 23 23 N 1.28728 * 108.95928 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.33732 * 180.02562 * 23 22 21 25 25 N 1.28870 * 109.32510 * 0.02562 * 23 22 21 26 26 C 1.46839 * 111.20293 * 61.74154 * 12 11 10 27 27 C 1.53042 * 109.52223 * 298.25878 * 26 12 11 28 28 H 0.96998 * 120.00292 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.57654 * 59.84089 * 9 7 2 30 30 H 1.09003 * 109.50249 * 57.61452 * 10 9 7 31 31 H 1.08994 * 109.50096 * 297.49798 * 10 9 7 32 32 H 1.08998 * 109.46575 * 180.80134 * 11 10 9 33 33 H 1.08998 * 109.46569 * 60.83360 * 11 10 9 34 34 H 1.07997 * 119.95564 * 359.97438 * 14 13 12 35 35 H 1.08000 * 119.82402 * 179.97438 * 15 14 13 36 36 H 1.07994 * 119.87695 * 180.02562 * 16 15 14 37 37 H 1.08999 * 109.46114 * 58.27184 * 26 12 11 38 38 H 1.08999 * 109.46901 * 178.24167 * 26 12 11 39 39 H 1.08999 * 109.50449 * 299.23886 * 27 26 12 40 40 H 1.09003 * 109.50480 * 179.11932 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2449 -3.6640 -0.0015 11 6 1.4751 -4.9851 0.0589 12 7 0.6533 -5.0191 1.2755 13 6 0.0397 -6.2620 1.4296 14 6 -0.8274 -6.7363 0.4551 15 6 -1.4345 -7.9677 0.6081 16 6 -1.1829 -8.7364 1.7307 17 6 -0.3174 -8.2800 2.7077 18 9 -0.0706 -9.0362 3.7998 19 6 0.2967 -7.0358 2.5665 20 6 1.2222 -6.5381 3.6135 21 7 1.8829 -5.3714 3.6097 22 7 2.5772 -5.3212 4.6955 23 7 2.3774 -6.3992 5.3700 24 1 2.7826 -6.6087 6.2261 25 7 1.5545 -7.1566 4.7296 26 6 -0.3404 -3.9381 1.2755 27 6 0.3753 -2.5855 1.2515 28 1 -0.4850 0.8400 -0.0004 29 1 0.6219 -2.5569 -0.8899 30 1 2.8991 -3.5839 0.8668 31 1 2.8426 -3.6324 -0.9123 32 1 2.1803 -5.8161 0.0736 33 1 0.8314 -5.0708 -0.8165 34 1 -1.0278 -6.1418 -0.4240 35 1 -2.1088 -8.3324 -0.1526 36 1 -1.6613 -9.6981 1.8424 37 1 -0.9755 -4.0286 0.3943 38 1 -0.9537 -4.0085 2.1738 39 1 1.0001 -2.4886 2.1394 40 1 -0.3627 -1.7835 1.2357 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826380659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:32 Heat of formation + Delta-G solvation = 99.752032 kcal Electronic energy + Delta-G solvation = -26849.903919 eV Core-core repulsion = 23002.601875 eV Total energy + Delta-G solvation = -3847.302045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.88207 -45.28202 -41.12347 -38.72564 -35.70197 -35.23103 -34.51014 -33.32223 -31.45722 -31.35305 -30.18855 -27.45330 -25.68456 -25.31991 -24.23671 -23.69443 -22.71542 -22.31440 -20.26182 -20.04796 -18.70174 -18.32694 -18.01853 -17.53419 -17.17388 -16.67115 -16.58183 -16.29854 -15.68319 -15.33074 -15.00979 -14.86722 -14.63692 -14.34189 -14.15359 -13.88160 -13.26923 -13.15986 -13.09831 -12.98278 -12.86050 -12.67732 -12.46527 -12.29275 -12.20182 -12.01940 -11.91429 -11.90001 -11.81788 -11.30737 -10.79125 -10.64124 -10.32258 -9.67252 -9.64580 -9.20977 -8.02929 -6.14402 -0.36457 0.10486 0.31397 1.41767 1.43307 1.45102 1.52058 1.53463 2.47793 2.57883 2.70957 2.76163 3.24084 3.24813 3.40088 3.96695 4.07569 4.18193 4.23130 4.31137 4.32393 4.46185 4.51464 4.57541 4.62466 4.77102 4.89409 4.95669 4.99437 5.08520 5.12449 5.27702 5.31395 5.37468 5.41794 5.62564 5.67930 5.72096 5.78501 6.02794 6.10764 6.29630 6.48485 6.55048 6.95954 7.32673 7.52329 9.01477 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.004134 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.244049 B = 6771.947911 C = 7880.473049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.050 3.950 10 C -0.095 4.095 11 C 0.080 3.920 12 N -0.498 5.498 13 C 0.148 3.852 14 C -0.166 4.166 15 C -0.044 4.044 16 C -0.151 4.151 17 C 0.127 3.873 18 F -0.129 7.129 19 C -0.062 4.062 20 C 0.204 3.796 21 N -0.240 5.240 22 N -0.079 5.079 23 N -0.209 5.209 24 H 0.490 0.510 25 N -0.295 5.295 26 C 0.086 3.914 27 C -0.088 4.088 28 H 0.259 0.741 29 H -0.002 1.002 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.141 0.859 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.034 0.966 38 H 0.055 0.945 39 H 0.024 0.976 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 -20.494 5.407 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.065 0.935 9 C 0.031 3.969 10 C -0.133 4.133 11 C -0.046 4.046 12 N -0.219 5.219 13 C 0.051 3.949 14 C -0.186 4.186 15 C -0.063 4.063 16 C -0.169 4.169 17 C 0.105 3.895 18 F -0.107 7.107 19 C -0.067 4.067 20 C -0.075 4.075 21 N -0.112 5.112 22 N -0.074 5.074 23 N -0.058 5.058 24 H 0.348 0.652 25 N -0.149 5.149 26 C -0.040 4.040 27 C -0.127 4.127 28 H 0.068 0.932 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.158 0.842 35 H 0.195 0.805 36 H 0.192 0.808 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.181 -19.828 6.138 20.870 hybrid contribution 0.152 0.806 0.158 0.836 sum -2.029 -19.021 6.296 20.139 Atomic orbital electron populations 1.69984 1.06929 1.26946 1.51697 1.25645 0.95639 1.01968 0.94996 0.85783 0.78544 0.79700 0.78631 1.19640 1.20901 1.20219 1.21540 0.92857 0.92405 1.50063 0.93515 1.18608 0.92998 0.92205 0.93045 1.21494 0.98032 0.93861 0.99931 1.22014 0.95598 0.98145 0.88812 1.59271 1.23097 0.99959 1.39617 1.18757 0.93350 0.90690 0.92071 1.21985 0.98123 0.98487 0.99990 1.21438 0.96526 0.91648 0.96730 1.21437 0.98999 1.03246 0.93254 1.17681 0.98028 0.88147 0.85647 1.91534 1.92893 1.74381 1.51897 1.17437 1.00462 0.95158 0.93687 1.23521 1.00324 0.90135 0.93531 1.76640 1.06740 1.17408 1.10424 1.79021 1.18683 1.08586 1.01132 1.47807 1.28150 1.09576 1.20314 0.65198 1.74980 1.10441 1.21841 1.07599 1.21973 0.92112 0.90814 0.99072 1.21360 0.99043 0.94080 0.98198 0.93167 0.98435 0.93722 0.92632 0.90956 0.94010 0.84158 0.80504 0.80757 0.94749 0.92606 0.95683 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.35 11.37 21.45 0.24 -53.11 16 2 C 0.02 0.90 5.31 84.65 0.45 1.35 16 3 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.53 -30.08 8.56 25.60 0.22 -29.86 16 8 H 0.05 2.64 7.75 -2.91 -0.02 2.62 16 9 C 0.05 2.54 2.16 -11.46 -0.02 2.52 16 10 C -0.10 -4.09 5.32 30.65 0.16 -3.93 16 11 C 0.08 2.82 5.11 86.32 0.44 3.26 16 12 N -0.50 -17.80 2.82 -694.74 -1.96 -19.76 16 13 C 0.15 4.39 4.68 38.46 0.18 4.57 16 14 C -0.17 -3.70 8.68 22.38 0.19 -3.51 16 15 C -0.04 -0.67 10.03 22.28 0.22 -0.44 16 16 C -0.15 -2.43 10.01 22.31 0.22 -2.21 16 17 C 0.13 3.02 7.27 22.57 0.16 3.18 16 18 F -0.13 -3.21 15.83 44.97 0.71 -2.50 16 19 C -0.06 -1.84 5.90 -19.89 -0.12 -1.95 16 20 C 0.20 6.72 7.89 137.32 1.08 7.81 16 21 N -0.24 -8.91 10.93 -52.23 -0.57 -9.48 16 22 N -0.08 -2.50 13.47 37.02 0.50 -2.00 16 23 N -0.21 -4.88 7.90 37.02 0.29 -4.59 16 24 H 0.49 5.98 8.96 -347.52 -3.12 2.87 16 25 N -0.30 -8.29 11.09 -52.18 -0.58 -8.87 16 26 C 0.09 3.41 5.17 86.33 0.45 3.85 16 27 C -0.09 -4.36 5.12 30.65 0.16 -4.20 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.33 8.11 -2.39 -0.02 2.31 16 33 H 0.04 1.36 7.33 -2.39 -0.02 1.35 16 34 H 0.14 3.02 7.12 -2.91 -0.02 3.00 16 35 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.03 1.30 7.55 -2.39 -0.02 1.28 16 38 H 0.06 2.16 8.11 -2.39 -0.02 2.15 16 39 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 3.43 6.17 -2.39 -0.01 3.41 16 Total: -1.00 -70.92 333.56 2.44 -68.48 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.02 Total: 4.62 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 3.80 Total: -19.57 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -2.08 Total: -97.81 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.71 Total: -2.50 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -70.92 2.44 -68.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826380659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.231 kcal (2) G-P(sol) polarization free energy of solvation -70.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds