Wall clock time and date at job start Tue Mar 31 2020 11:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48503 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46871 * 299.99514 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99626 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 197.85789 * 7 2 1 9 9 C 1.41435 * 120.00029 * 17.86125 * 7 2 1 10 10 C 1.40782 * 120.17859 * 204.36202 * 9 7 2 11 11 C 1.37709 * 120.04062 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41454 * 0.05068 * 11 10 9 13 13 C 1.39882 * 120.35542 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02157 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99420 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00215 * 359.97438 * 14 13 12 17 17 C 1.46501 * 119.99764 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46733 * 179.97438 * 17 16 14 19 19 C 1.53851 * 113.60855 * 272.56147 * 18 17 16 20 20 C 1.53383 * 86.97362 * 220.29628 * 19 18 17 21 21 C 1.53380 * 87.47641 * 25.21669 * 20 19 18 22 22 O 1.43328 * 114.56592 * 141.18508 * 20 19 18 23 23 C 1.44901 * 104.66331 * 106.52623 * 22 20 19 24 24 C 1.54941 * 101.79137 * 35.67054 * 23 22 20 25 25 O 1.42940 * 114.80169 * 268.94283 * 20 19 18 26 26 C 1.39030 * 119.95217 * 359.97438 * 13 12 11 27 27 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.98168 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.79563 * 180.02562 * 11 10 9 30 30 H 1.08003 * 119.82123 * 179.97438 * 12 11 10 31 31 H 0.96996 * 119.99968 * 359.97438 * 16 14 13 32 32 H 1.08992 * 109.47231 * 300.00018 * 17 16 14 33 33 H 1.08999 * 109.47030 * 59.99886 * 17 16 14 34 34 H 1.08997 * 112.84403 * 43.84051 * 18 17 16 35 35 H 1.08998 * 113.62924 * 334.82478 * 19 18 17 36 36 H 1.09001 * 113.62728 * 105.77203 * 19 18 17 37 37 H 1.09000 * 113.63094 * 220.26277 * 21 20 19 38 38 H 1.08998 * 113.63535 * 89.30292 * 21 20 19 39 39 H 1.09005 * 110.96430 * 277.54256 * 23 22 20 40 40 H 1.08997 * 110.96297 * 153.79701 * 23 22 20 41 41 H 1.09009 * 110.68736 * 206.27760 * 24 23 22 42 42 H 1.09001 * 110.69034 * 83.09038 * 24 23 22 43 43 H 1.07997 * 120.20691 * 179.73118 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2874 9 6 1.3520 -2.4074 -0.3746 10 6 1.8274 -3.6500 0.0858 11 6 1.1862 -4.8122 -0.2808 12 6 0.0738 -4.7693 -1.1026 13 6 -0.4127 -3.5440 -1.5703 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0251 -2.4417 -2.8536 16 7 -2.2181 -4.6534 -2.7977 17 6 -3.3964 -4.6164 -3.6675 18 6 -3.8972 -6.0418 -3.9087 19 6 -3.2202 -6.7392 -5.1013 20 6 -4.6013 -7.3096 -5.4473 21 6 -5.2070 -6.1067 -4.7132 22 8 -4.8909 -7.3598 -6.8501 23 6 -4.7968 -8.7643 -7.1940 24 6 -5.3577 -9.4410 -5.9180 25 8 -4.8902 -8.5797 -4.8586 26 6 0.2225 -2.3613 -1.2087 27 1 -0.4850 0.8399 -0.0004 28 1 2.6951 -3.6917 0.7276 29 1 1.5541 -5.7633 0.0751 30 1 -0.4214 -5.6867 -1.3845 31 1 -1.8806 -5.5033 -2.4742 32 1 -4.1820 -4.0307 -3.1903 33 1 -3.1303 -4.1590 -4.6204 34 1 -3.9126 -6.6442 -3.0005 35 1 -2.8330 -6.0476 -5.8495 36 1 -2.4946 -7.4983 -4.8091 37 1 -6.0789 -6.3574 -4.1091 38 1 -5.3695 -5.2402 -5.3541 39 1 -3.7605 -9.0551 -7.3663 40 1 -5.4146 -8.9956 -8.0617 41 1 -4.9514 -10.4461 -5.8048 42 1 -6.4472 -9.4653 -5.9421 43 1 -0.1471 -1.4134 -1.5709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832220543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:33 Heat of formation + Delta-G solvation = -84.574343 kcal Electronic energy + Delta-G solvation = -25551.017120 eV Core-core repulsion = 21754.596887 eV Total energy + Delta-G solvation = -3796.420233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24918 -39.19987 -37.64069 -36.83374 -35.39051 -33.95232 -33.57255 -30.44538 -29.67146 -29.40705 -27.17410 -26.16505 -25.24018 -23.69866 -22.86351 -21.74047 -20.89152 -20.09540 -19.24177 -17.80062 -17.46173 -16.90830 -16.33204 -15.91093 -15.69933 -15.25536 -15.07274 -14.81432 -14.61355 -14.25002 -13.94578 -13.47980 -13.41031 -13.18329 -12.98959 -12.70988 -12.58004 -12.45132 -12.38643 -12.22695 -11.63298 -11.36846 -11.16587 -11.07437 -11.06899 -10.79561 -10.71439 -10.58742 -10.46881 -10.00590 -9.76698 -9.67071 -9.20716 -8.98568 -8.61299 -7.61057 -7.50458 -6.78794 -4.39836 2.23574 2.82197 3.01164 3.09009 3.13936 3.16175 3.42700 3.68166 3.89525 3.93565 4.10981 4.26099 4.37448 4.47433 4.57879 4.66290 4.68611 4.74027 5.05160 5.14306 5.19906 5.39747 5.46803 5.52283 5.61140 5.64740 5.66666 5.72894 5.87088 5.98825 6.10192 6.17771 6.29575 6.73405 6.80486 6.90084 7.00603 7.04169 7.22886 7.39919 7.72176 7.78148 7.94590 8.12420 8.21378 8.52531 8.81810 8.85203 8.98898 10.15911 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.002374 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.053370 B =11792.675057 C =12424.494408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.127 4.127 14 C 0.563 3.437 15 O -0.547 6.547 16 N -0.736 5.736 17 C 0.134 3.866 18 C -0.114 4.114 19 C -0.149 4.149 20 C 0.230 3.770 21 C -0.126 4.126 22 O -0.363 6.363 23 C 0.014 3.986 24 C 0.019 3.981 25 O -0.359 6.359 26 C -0.093 4.093 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -15.811 -10.937 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.353 3.647 15 O -0.425 6.425 16 N -0.390 5.390 17 C 0.010 3.990 18 C -0.133 4.133 19 C -0.187 4.187 20 C 0.153 3.847 21 C -0.164 4.164 22 O -0.283 6.283 23 C -0.062 4.062 24 C -0.057 4.057 25 O -0.280 6.280 26 C -0.113 4.113 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.327 -14.736 -11.143 21.165 hybrid contribution 0.427 0.022 0.126 0.446 sum -9.900 -14.714 -11.017 20.878 Atomic orbital electron populations 1.69798 1.07580 1.29676 1.33644 1.25973 0.94768 1.01569 0.92332 0.86242 0.80883 0.80850 0.78677 1.18341 1.19552 1.19928 1.19615 0.98227 0.91034 1.39940 0.90049 1.17615 0.91202 0.92479 0.89191 1.21092 1.03478 0.92766 1.05837 1.20434 0.96063 0.96720 0.98432 1.20342 1.01298 0.94627 1.07527 1.19480 0.96539 0.95284 1.01763 1.18850 0.83330 0.82854 0.79626 1.90694 1.66346 1.29928 1.55550 1.45929 1.30944 1.09720 1.52398 1.21170 0.88188 0.94730 0.94905 1.22573 0.96047 0.96702 0.97972 1.23853 0.96151 1.00338 0.98347 1.24403 0.96283 0.85781 0.78239 1.23445 0.98053 0.96982 0.97968 1.89239 1.91156 1.24598 1.23315 1.24394 1.02191 0.80971 0.98670 1.24262 1.00246 0.95412 0.85777 1.88833 1.85510 1.21667 1.31982 1.21639 0.96467 0.96482 0.96736 0.90489 0.88638 0.88927 0.89247 0.76555 0.91470 0.91574 0.87824 0.87824 0.90075 0.89675 0.87737 0.90471 0.87404 0.88090 0.90458 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.93 10.95 55.55 0.61 -20.32 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.91 29.60 -169.99 -5.03 13.88 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 8 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 9 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 10 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 11 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 12 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 14 C 0.56 12.48 7.77 -12.31 -0.10 12.39 16 15 O -0.55 -13.93 16.33 5.32 0.09 -13.85 16 16 N -0.74 -12.27 5.51 -61.24 -0.34 -12.61 16 17 C 0.13 1.87 5.51 -4.04 -0.02 1.85 16 18 C -0.11 -1.24 3.74 -89.73 -0.34 -1.58 16 19 C -0.15 -1.56 7.37 -26.09 -0.19 -1.75 16 20 C 0.23 2.40 1.84 -26.34 -0.05 2.35 16 21 C -0.13 -1.27 7.38 -26.09 -0.19 -1.46 16 22 O -0.36 -3.79 11.42 -59.03 -0.67 -4.47 16 23 C 0.01 0.10 7.96 38.18 0.30 0.40 16 24 C 0.02 0.13 8.08 38.18 0.31 0.44 16 25 O -0.36 -3.73 11.28 -59.03 -0.67 -4.40 16 26 C -0.09 -2.51 8.23 -38.44 -0.32 -2.83 16 27 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 28 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 29 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.09 1.56 6.38 -52.48 -0.33 1.23 16 31 H 0.40 5.80 6.49 -40.82 -0.26 5.53 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.10 1.11 7.90 -51.93 -0.41 0.70 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -31.63 359.16 -9.90 -41.53 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.92 Total: 10.32 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -3.38 Total: -15.50 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.27 Total: -32.93 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.25 Total: -22.71 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.63 -9.90 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832220543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.046 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds