Wall clock time and date at job start Tue Mar 31 2020 11:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48503 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46871 * 299.99514 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99626 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 197.85789 * 7 2 1 9 9 C 1.41435 * 120.00029 * 17.86125 * 7 2 1 10 10 C 1.40782 * 120.17859 * 204.36202 * 9 7 2 11 11 C 1.37709 * 120.04062 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.41454 * 0.05068 * 11 10 9 13 13 C 1.39882 * 120.35542 * 359.97438 * 12 11 10 14 14 C 1.47889 * 120.02157 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99420 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00215 * 359.97438 * 14 13 12 17 17 C 1.46501 * 119.99764 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46733 * 179.97438 * 17 16 14 19 19 C 1.53851 * 113.60855 * 272.56147 * 18 17 16 20 20 C 1.53383 * 86.97362 * 220.29628 * 19 18 17 21 21 C 1.53380 * 87.47641 * 25.21669 * 20 19 18 22 22 O 1.43328 * 114.56592 * 141.18508 * 20 19 18 23 23 C 1.44901 * 104.66331 * 106.52623 * 22 20 19 24 24 C 1.54941 * 101.79137 * 35.67054 * 23 22 20 25 25 O 1.42940 * 114.80169 * 268.94283 * 20 19 18 26 26 C 1.39030 * 119.95217 * 359.97438 * 13 12 11 27 27 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.98168 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.79563 * 180.02562 * 11 10 9 30 30 H 1.08003 * 119.82123 * 179.97438 * 12 11 10 31 31 H 0.96996 * 119.99968 * 359.97438 * 16 14 13 32 32 H 1.08992 * 109.47231 * 300.00018 * 17 16 14 33 33 H 1.08999 * 109.47030 * 59.99886 * 17 16 14 34 34 H 1.08997 * 112.84403 * 43.84051 * 18 17 16 35 35 H 1.08998 * 113.62924 * 334.82478 * 19 18 17 36 36 H 1.09001 * 113.62728 * 105.77203 * 19 18 17 37 37 H 1.09000 * 113.63094 * 220.26277 * 21 20 19 38 38 H 1.08998 * 113.63535 * 89.30292 * 21 20 19 39 39 H 1.09005 * 110.96430 * 277.54256 * 23 22 20 40 40 H 1.08997 * 110.96297 * 153.79701 * 23 22 20 41 41 H 1.09009 * 110.68736 * 206.27760 * 24 23 22 42 42 H 1.09001 * 110.69034 * 83.09038 * 24 23 22 43 43 H 1.07997 * 120.20691 * 179.73118 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2874 9 6 1.3520 -2.4074 -0.3746 10 6 1.8274 -3.6500 0.0858 11 6 1.1862 -4.8122 -0.2808 12 6 0.0738 -4.7693 -1.1026 13 6 -0.4127 -3.5440 -1.5703 14 6 -1.6025 -3.5067 -2.4479 15 8 -2.0251 -2.4417 -2.8536 16 7 -2.2181 -4.6534 -2.7977 17 6 -3.3964 -4.6164 -3.6675 18 6 -3.8972 -6.0418 -3.9087 19 6 -3.2202 -6.7392 -5.1013 20 6 -4.6013 -7.3096 -5.4473 21 6 -5.2070 -6.1067 -4.7132 22 8 -4.8909 -7.3598 -6.8501 23 6 -4.7968 -8.7643 -7.1940 24 6 -5.3577 -9.4410 -5.9180 25 8 -4.8902 -8.5797 -4.8586 26 6 0.2225 -2.3613 -1.2087 27 1 -0.4850 0.8399 -0.0004 28 1 2.6951 -3.6917 0.7276 29 1 1.5541 -5.7633 0.0751 30 1 -0.4214 -5.6867 -1.3845 31 1 -1.8806 -5.5033 -2.4742 32 1 -4.1820 -4.0307 -3.1903 33 1 -3.1303 -4.1590 -4.6204 34 1 -3.9126 -6.6442 -3.0005 35 1 -2.8330 -6.0476 -5.8495 36 1 -2.4946 -7.4983 -4.8091 37 1 -6.0789 -6.3574 -4.1091 38 1 -5.3695 -5.2402 -5.3541 39 1 -3.7605 -9.0551 -7.3663 40 1 -5.4146 -8.9956 -8.0617 41 1 -4.9514 -10.4461 -5.8048 42 1 -6.4472 -9.4653 -5.9421 43 1 -0.1471 -1.4134 -1.5709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832220543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:32 Heat of formation + Delta-G solvation = -104.993670 kcal Electronic energy + Delta-G solvation = -25551.902568 eV Core-core repulsion = 21754.596887 eV Total energy + Delta-G solvation = -3797.305682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98514 -40.85253 -38.95379 -38.27759 -36.08540 -35.68860 -35.18568 -32.15526 -31.27745 -30.43374 -28.38606 -27.12132 -26.95122 -24.34813 -24.19561 -23.05492 -22.66206 -21.39129 -20.52779 -19.45152 -18.34395 -17.86271 -17.51300 -17.19572 -16.92848 -16.63299 -16.37166 -16.23663 -15.99682 -15.49584 -15.06191 -14.98844 -14.62385 -14.46158 -14.29015 -14.16133 -13.67988 -13.61640 -13.45053 -13.31514 -12.95412 -12.87218 -12.78874 -12.53847 -12.19296 -12.16179 -11.97285 -11.88636 -11.70425 -11.49279 -11.15987 -11.08008 -10.77197 -10.49841 -10.13356 -9.46486 -9.37973 -8.66569 -6.37790 0.38647 1.00815 1.36395 1.46788 1.52834 2.10570 2.19294 2.22070 2.41539 2.75977 2.78937 3.37332 3.55992 3.63145 3.70593 3.72690 3.84576 4.06226 4.09253 4.15126 4.25376 4.43073 4.54690 4.60003 4.60590 4.68624 4.68889 4.71460 4.76943 4.90283 4.92936 4.96670 5.06035 5.09443 5.20123 5.22430 5.31977 5.48494 5.53184 5.87343 5.93248 6.06027 6.13487 6.29083 6.51920 6.69578 6.88177 6.95153 7.31773 8.30421 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.002374 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.053370 B =11792.675057 C =12424.494408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.496 4.496 8 H 0.084 0.916 9 C 0.065 3.935 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.139 4.139 14 C 0.559 3.441 15 O -0.591 6.591 16 N -0.711 5.711 17 C 0.134 3.866 18 C -0.103 4.103 19 C -0.148 4.148 20 C 0.231 3.769 21 C -0.126 4.126 22 O -0.384 6.384 23 C 0.009 3.991 24 C 0.014 3.986 25 O -0.377 6.377 26 C -0.133 4.133 27 H 0.286 0.714 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.413 0.587 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 -18.798 -11.291 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.174 1.174 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.525 4.525 8 H 0.102 0.898 9 C 0.063 3.937 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.217 4.217 13 C -0.142 4.142 14 C 0.348 3.652 15 O -0.472 6.472 16 N -0.364 5.364 17 C 0.011 3.989 18 C -0.122 4.122 19 C -0.186 4.186 20 C 0.154 3.846 21 C -0.164 4.164 22 O -0.305 6.305 23 C -0.067 4.067 24 C -0.062 4.062 25 O -0.298 6.298 26 C -0.153 4.153 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.251 0.749 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.367 -17.803 -11.501 23.594 hybrid contribution 0.358 0.675 0.164 0.781 sum -10.009 -17.128 -11.337 22.849 Atomic orbital electron populations 1.69897 1.09271 1.30552 1.35384 1.26877 0.95418 1.05032 0.91365 0.85148 0.79678 0.76075 0.78764 1.17382 1.19576 1.18841 1.19883 0.98580 0.92186 1.41893 0.89775 1.17969 0.91801 0.93999 0.89925 1.21409 1.03890 0.92762 1.05577 1.20933 0.95358 0.97730 0.97357 1.20858 1.00499 0.95093 1.05204 1.19785 0.96967 0.95535 1.01888 1.18758 0.83262 0.83619 0.79517 1.90671 1.67466 1.31868 1.57231 1.45725 1.30720 1.08590 1.51315 1.21320 0.86764 0.97030 0.93830 1.22467 0.96678 0.94384 0.98657 1.23834 0.96611 1.00321 0.97842 1.24283 0.95865 0.85987 0.78515 1.23451 0.97812 0.97234 0.97924 1.89216 1.91229 1.26835 1.23213 1.24662 1.03267 0.79200 0.99569 1.24522 1.00985 0.95856 0.84800 1.88805 1.85756 1.21901 1.33365 1.21448 0.98342 0.96458 0.99091 0.90320 0.87322 0.84290 0.84542 0.74897 0.92174 0.92138 0.86917 0.88370 0.89401 0.88965 0.87767 0.89775 0.85122 0.85856 0.89580 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.75 10.95 21.82 0.24 -46.51 16 2 C 0.03 1.48 5.14 85.25 0.44 1.92 16 3 Si 0.98 40.16 29.60 68.60 2.03 42.19 16 4 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.50 -27.33 9.05 23.47 0.21 -27.12 16 8 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 10 C -0.22 -10.19 9.78 22.77 0.22 -9.97 16 11 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 12 C -0.20 -7.75 9.55 22.70 0.22 -7.54 16 13 C -0.14 -6.64 5.87 -20.13 -0.12 -6.75 16 14 C 0.56 24.96 7.77 86.80 0.67 25.64 16 15 O -0.59 -31.35 16.33 -3.87 -0.06 -31.41 16 16 N -0.71 -22.65 5.51 -465.94 -2.57 -25.21 16 17 C 0.13 3.62 5.51 86.38 0.48 4.09 16 18 C -0.10 -2.04 3.74 -10.22 -0.04 -2.08 16 19 C -0.15 -2.81 7.37 31.01 0.23 -2.58 16 20 C 0.23 4.37 1.84 30.85 0.06 4.43 16 21 C -0.13 -2.34 7.38 31.01 0.23 -2.11 16 22 O -0.38 -7.37 11.42 -126.23 -1.44 -8.81 16 23 C 0.01 0.10 7.96 72.65 0.58 0.67 16 24 C 0.01 0.15 8.08 72.65 0.59 0.74 16 25 O -0.38 -6.91 11.28 -126.23 -1.42 -8.33 16 26 C -0.13 -7.49 8.23 23.01 0.19 -7.30 16 27 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 28 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 29 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 30 H 0.14 4.04 6.38 -2.91 -0.02 4.02 16 31 H 0.41 10.65 6.49 -92.71 -0.60 10.05 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.74 7.84 -2.39 -0.02 1.72 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 1.97 7.90 -2.39 -0.02 1.95 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.10 1.93 8.10 -2.39 -0.02 1.91 16 39 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.13 0.78 8.14 -2.39 -0.02 0.77 16 41 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.10 6.18 5.74 -2.91 -0.02 6.16 16 Total: -1.00 -73.09 359.16 1.26 -71.82 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.43 Total: 34.34 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.06 Total: -28.07 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -2.33 Total: -71.72 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -2.93 Total: -48.55 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -73.09 1.26 -71.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832220543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.170 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds