Wall clock time and date at job start Tue Mar 31 2020 11:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86806 * 119.99990 * 2 1 4 4 H 1.48497 * 109.46990 * 269.99444 * 3 2 1 5 5 H 1.48490 * 109.47169 * 29.99950 * 3 2 1 6 6 H 1.48506 * 109.46822 * 150.00056 * 3 2 1 7 7 C 1.38891 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99541 * 203.19187 * 7 2 1 9 9 N 1.37141 * 120.00176 * 23.18697 * 7 2 1 10 10 C 1.34779 * 119.99578 * 23.96410 * 9 7 2 11 11 O 1.21276 * 119.99931 * 7.89789 * 10 9 7 12 12 C 1.50696 * 119.99704 * 187.89739 * 10 9 7 13 13 H 1.09007 * 109.47001 * 42.86500 * 12 10 9 14 14 C 1.53007 * 109.47049 * 162.85661 * 12 10 9 15 15 C 1.53002 * 109.46618 * 60.00436 * 14 12 10 16 16 C 1.53002 * 109.47323 * 59.99718 * 15 14 12 17 17 C 1.52998 * 109.47111 * 299.99933 * 16 15 14 18 18 H 1.08992 * 109.47172 * 299.99741 * 17 16 15 19 19 C 1.50698 * 109.46764 * 179.97438 * 17 16 15 20 20 O 1.20829 * 120.00201 * 239.99644 * 19 17 16 21 21 O 1.34229 * 120.00298 * 60.00469 * 19 17 16 22 22 C 1.52998 * 109.47538 * 282.86091 * 12 10 9 23 23 C 1.39786 * 120.00102 * 203.95944 * 9 7 2 24 24 C 1.38960 * 120.07901 * 283.94353 * 23 9 7 25 25 C 1.38082 * 119.92085 * 179.97438 * 24 23 9 26 26 C 1.38308 * 120.07692 * 359.97438 * 25 24 23 27 27 C 1.38310 * 120.15921 * 0.02562 * 26 25 24 28 28 C 1.38085 * 120.07415 * 0.02988 * 27 26 25 29 29 H 0.97002 * 119.99813 * 5.04836 * 1 2 3 30 30 H 1.08998 * 109.46907 * 179.97438 * 14 12 10 31 31 H 1.08993 * 109.47241 * 300.00154 * 14 12 10 32 32 H 1.09006 * 109.47201 * 299.99715 * 15 14 12 33 33 H 1.08997 * 109.46909 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.46873 * 179.97438 * 16 15 14 35 35 H 1.09000 * 109.46570 * 59.99890 * 16 15 14 36 36 H 0.96694 * 117.00884 * 179.97438 * 21 19 17 37 37 H 1.08997 * 109.47189 * 60.00013 * 22 12 10 38 38 H 1.08992 * 109.47245 * 179.97438 * 22 12 10 39 39 H 1.08001 * 120.03635 * 0.24901 * 24 23 9 40 40 H 1.07999 * 119.96353 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.92114 * 180.02562 * 26 25 24 42 42 H 1.07997 * 119.96162 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.03702 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4401 0.7001 7 6 2.0087 -1.2028 -0.0005 8 1 3.0232 -1.2407 0.3678 9 7 1.4061 -2.3424 -0.4687 10 6 0.3852 -2.2538 -1.3442 11 8 0.0926 -1.1808 -1.8278 12 6 -0.3925 -3.4880 -1.7221 13 1 -0.5884 -4.0816 -0.8290 14 6 -1.7199 -3.0780 -2.3631 15 6 -1.4450 -2.2448 -3.6166 16 6 -0.6323 -3.0746 -4.6125 17 6 0.6950 -3.4846 -3.9714 18 1 1.2575 -2.5919 -3.6981 19 6 1.4950 -4.3025 -4.9522 20 8 1.8129 -5.4352 -4.6767 21 8 1.8548 -3.7726 -6.1319 22 6 0.4200 -4.3179 -2.7180 23 6 1.8507 -3.5956 -0.0379 24 6 3.0299 -4.1282 -0.5445 25 6 3.4664 -5.3663 -0.1163 26 6 2.7316 -6.0759 0.8162 27 6 1.5574 -5.5489 1.3226 28 6 1.1144 -4.3119 0.8980 29 1 -0.4850 0.8368 -0.0739 30 1 -2.2822 -3.9707 -2.6369 31 1 -2.2988 -2.4868 -1.6536 32 1 -0.8824 -1.3520 -3.3433 33 1 -2.3906 -1.9523 -4.0730 34 1 -0.4369 -2.4811 -5.5057 35 1 -1.1949 -3.9673 -4.8858 36 1 2.3676 -4.3354 -6.7279 37 1 1.3656 -4.6100 -2.2613 38 1 -0.1423 -5.2107 -2.9910 39 1 3.6067 -3.5725 -1.2690 40 1 4.3826 -5.7811 -0.5099 41 1 3.0755 -7.0438 1.1497 42 1 0.9863 -6.1055 2.0509 43 1 0.1972 -3.9011 1.2935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:52 Heat of formation + Delta-G solvation = -80.533726 kcal Electronic energy + Delta-G solvation = -28467.723733 eV Core-core repulsion = 24671.478714 eV Total energy + Delta-G solvation = -3796.245019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55407 -39.58954 -38.14136 -36.45952 -35.88390 -33.95232 -32.09859 -30.82099 -30.41016 -30.29933 -28.65676 -25.10002 -24.16338 -23.01162 -21.95394 -21.62650 -20.89940 -20.15004 -18.74160 -17.83935 -17.27264 -16.52997 -16.00413 -15.72963 -15.39529 -14.81226 -14.62338 -14.38085 -14.02599 -13.76665 -13.51276 -13.42621 -12.95046 -12.90933 -12.68647 -12.28845 -12.10157 -11.90060 -11.55883 -11.46709 -11.37782 -11.33203 -10.97259 -10.89192 -10.77430 -10.64938 -10.56389 -10.42412 -10.18145 -10.00969 -9.72385 -9.65471 -9.15448 -8.50710 -8.42138 -7.68721 -6.94188 -6.04928 -3.83277 1.86221 1.88196 2.40723 3.24313 3.33671 3.39396 3.41246 4.22382 4.26319 4.39656 4.81234 4.98510 5.12454 5.25985 5.27389 5.37148 5.47502 5.53155 5.59434 5.71524 5.72565 5.80913 5.91039 5.94544 5.95117 6.03680 6.08581 6.15776 6.34539 6.40314 6.42983 6.51647 6.56511 6.62758 6.64017 6.75561 6.85155 6.88742 6.95318 7.22576 7.28729 7.42107 7.59539 8.06995 8.16945 8.95703 9.16457 9.65153 10.29637 10.92949 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.007270 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.277857 B = 3850.326456 C = 5236.240480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.052 3.948 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.424 5.424 10 C 0.456 3.544 11 O -0.494 6.494 12 C -0.101 4.101 13 H 0.078 0.922 14 C -0.090 4.090 15 C -0.141 4.141 16 C -0.100 4.100 17 C -0.078 4.078 18 H 0.117 0.883 19 C 0.484 3.516 20 O -0.520 6.520 21 O -0.516 6.516 22 C -0.090 4.090 23 C 0.173 3.827 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.141 4.141 27 C -0.115 4.115 28 C -0.128 4.128 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.402 0.598 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -9.531 -5.173 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.462 4.462 8 H 0.102 0.898 9 N -0.142 5.142 10 C 0.245 3.755 11 O -0.369 6.369 12 C -0.123 4.123 13 H 0.097 0.903 14 C -0.128 4.128 15 C -0.178 4.178 16 C -0.138 4.138 17 C -0.097 4.097 18 H 0.134 0.866 19 C 0.327 3.673 20 O -0.408 6.408 21 O -0.327 6.327 22 C -0.128 4.128 23 C 0.082 3.918 24 C -0.147 4.147 25 C -0.132 4.132 26 C -0.159 4.159 27 C -0.134 4.134 28 C -0.148 4.148 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.260 0.740 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.086 -8.880 -5.034 10.208 hybrid contribution 0.802 0.242 -0.275 0.882 sum 0.888 -8.638 -5.308 10.178 Atomic orbital electron populations 1.70093 1.06357 1.27630 1.38894 1.24782 0.94661 0.98667 0.97827 0.86242 0.79345 0.82747 0.78119 1.20642 1.21489 1.20116 1.19172 0.97309 0.85317 1.44430 0.89781 1.41187 1.32815 1.01818 1.38404 1.19332 0.83624 0.89114 0.83431 1.90334 1.66871 1.29008 1.50664 1.21218 0.96034 0.96868 0.98193 0.90338 1.21225 0.95372 0.98644 0.97572 1.22048 0.99776 1.01897 0.94046 1.21451 0.93562 0.99964 0.98789 1.21134 0.96698 0.99363 0.92518 0.86558 1.23888 0.76750 0.85999 0.80662 1.90677 1.53229 1.20062 1.76834 1.84600 1.68764 1.50183 1.29191 1.21395 1.01369 0.96889 0.93120 1.18049 0.93143 0.87554 0.93099 1.21398 0.97129 0.95614 1.00581 1.20939 0.99607 0.94815 0.97864 1.20982 0.96029 0.99896 0.98980 1.20965 0.96647 0.95685 1.00070 1.21536 1.01058 0.95121 0.97058 0.92646 0.93270 0.91513 0.86036 0.93141 0.91395 0.92701 0.74008 0.90550 0.91473 0.86268 0.86638 0.86819 0.86591 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.29 10.40 55.49 0.58 -21.71 16 2 C 0.05 1.39 4.36 -17.49 -0.08 1.32 16 3 Si 0.91 21.35 29.62 -169.99 -5.03 16.32 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.34 -8.96 9.47 -14.93 -0.14 -9.10 16 8 H 0.08 2.20 7.93 -52.49 -0.42 1.78 16 9 N -0.42 -10.17 2.65 -58.98 -0.16 -10.32 16 10 C 0.46 10.69 4.82 -10.99 -0.05 10.64 16 11 O -0.49 -12.93 9.49 5.56 0.05 -12.88 16 12 C -0.10 -1.94 2.29 -91.77 -0.21 -2.15 16 13 H 0.08 1.48 6.29 -51.93 -0.33 1.15 16 14 C -0.09 -1.60 5.25 -26.73 -0.14 -1.74 16 15 C -0.14 -2.44 5.63 -26.73 -0.15 -2.59 16 16 C -0.10 -1.54 5.13 -26.73 -0.14 -1.68 16 17 C -0.08 -1.33 2.41 -91.77 -0.22 -1.55 16 18 H 0.12 2.26 7.10 -51.93 -0.37 1.89 16 19 C 0.48 7.65 7.63 36.00 0.27 7.92 16 20 O -0.52 -9.24 16.74 -18.75 -0.31 -9.55 16 21 O -0.52 -6.59 13.33 -39.25 -0.52 -7.12 16 22 C -0.09 -1.58 3.90 -26.73 -0.10 -1.68 16 23 C 0.17 3.55 3.36 -83.70 -0.28 3.27 16 24 C -0.13 -2.35 8.49 -39.37 -0.33 -2.68 16 25 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 26 C -0.14 -2.03 10.04 -39.53 -0.40 -2.43 16 27 C -0.11 -1.76 10.04 -39.61 -0.40 -2.15 16 28 C -0.13 -2.37 8.32 -39.37 -0.33 -2.69 16 29 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.12 2.57 4.98 -51.93 -0.26 2.31 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 3.18 9.10 45.56 0.41 3.59 16 37 H 0.08 1.42 5.47 -51.93 -0.28 1.14 16 38 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.12 2.31 7.98 -52.49 -0.42 1.90 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -31.25 342.91 -8.34 -39.59 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.02 Total: 9.96 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.10 Total: -9.45 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.42 Total: -32.04 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.78 Total: -29.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.25 -8.34 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.940 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds