Wall clock time and date at job start Tue Mar 31 2020 11:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86806 * 119.99990 * 2 1 4 4 H 1.48497 * 109.46990 * 269.99444 * 3 2 1 5 5 H 1.48490 * 109.47169 * 29.99950 * 3 2 1 6 6 H 1.48506 * 109.46822 * 150.00056 * 3 2 1 7 7 C 1.38891 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99541 * 203.19187 * 7 2 1 9 9 N 1.37141 * 120.00176 * 23.18697 * 7 2 1 10 10 C 1.34779 * 119.99578 * 23.96410 * 9 7 2 11 11 O 1.21276 * 119.99931 * 7.89789 * 10 9 7 12 12 C 1.50696 * 119.99704 * 187.89739 * 10 9 7 13 13 H 1.09007 * 109.47001 * 42.86500 * 12 10 9 14 14 C 1.53007 * 109.47049 * 162.85661 * 12 10 9 15 15 C 1.53002 * 109.46618 * 60.00436 * 14 12 10 16 16 C 1.53002 * 109.47323 * 59.99718 * 15 14 12 17 17 C 1.52998 * 109.47111 * 299.99933 * 16 15 14 18 18 H 1.08992 * 109.47172 * 299.99741 * 17 16 15 19 19 C 1.50698 * 109.46764 * 179.97438 * 17 16 15 20 20 O 1.20829 * 120.00201 * 239.99644 * 19 17 16 21 21 O 1.34229 * 120.00298 * 60.00469 * 19 17 16 22 22 C 1.52998 * 109.47538 * 282.86091 * 12 10 9 23 23 C 1.39786 * 120.00102 * 203.95944 * 9 7 2 24 24 C 1.38960 * 120.07901 * 283.94353 * 23 9 7 25 25 C 1.38082 * 119.92085 * 179.97438 * 24 23 9 26 26 C 1.38308 * 120.07692 * 359.97438 * 25 24 23 27 27 C 1.38310 * 120.15921 * 0.02562 * 26 25 24 28 28 C 1.38085 * 120.07415 * 0.02988 * 27 26 25 29 29 H 0.97002 * 119.99813 * 5.04836 * 1 2 3 30 30 H 1.08998 * 109.46907 * 179.97438 * 14 12 10 31 31 H 1.08993 * 109.47241 * 300.00154 * 14 12 10 32 32 H 1.09006 * 109.47201 * 299.99715 * 15 14 12 33 33 H 1.08997 * 109.46909 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.46873 * 179.97438 * 16 15 14 35 35 H 1.09000 * 109.46570 * 59.99890 * 16 15 14 36 36 H 0.96694 * 117.00884 * 179.97438 * 21 19 17 37 37 H 1.08997 * 109.47189 * 60.00013 * 22 12 10 38 38 H 1.08992 * 109.47245 * 179.97438 * 22 12 10 39 39 H 1.08001 * 120.03635 * 0.24901 * 24 23 9 40 40 H 1.07999 * 119.96353 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.92114 * 180.02562 * 26 25 24 42 42 H 1.07997 * 119.96162 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.03702 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4401 0.7001 7 6 2.0087 -1.2028 -0.0005 8 1 3.0232 -1.2407 0.3678 9 7 1.4061 -2.3424 -0.4687 10 6 0.3852 -2.2538 -1.3442 11 8 0.0926 -1.1808 -1.8278 12 6 -0.3925 -3.4880 -1.7221 13 1 -0.5884 -4.0816 -0.8290 14 6 -1.7199 -3.0780 -2.3631 15 6 -1.4450 -2.2448 -3.6166 16 6 -0.6323 -3.0746 -4.6125 17 6 0.6950 -3.4846 -3.9714 18 1 1.2575 -2.5919 -3.6981 19 6 1.4950 -4.3025 -4.9522 20 8 1.8129 -5.4352 -4.6767 21 8 1.8548 -3.7726 -6.1319 22 6 0.4200 -4.3179 -2.7180 23 6 1.8507 -3.5956 -0.0379 24 6 3.0299 -4.1282 -0.5445 25 6 3.4664 -5.3663 -0.1163 26 6 2.7316 -6.0759 0.8162 27 6 1.5574 -5.5489 1.3226 28 6 1.1144 -4.3119 0.8980 29 1 -0.4850 0.8368 -0.0739 30 1 -2.2822 -3.9707 -2.6369 31 1 -2.2988 -2.4868 -1.6536 32 1 -0.8824 -1.3520 -3.3433 33 1 -2.3906 -1.9523 -4.0730 34 1 -0.4369 -2.4811 -5.5057 35 1 -1.1949 -3.9673 -4.8858 36 1 2.3676 -4.3354 -6.7279 37 1 1.3656 -4.6100 -2.2613 38 1 -0.1423 -5.2107 -2.9910 39 1 3.6067 -3.5725 -1.2690 40 1 4.3826 -5.7811 -0.5099 41 1 3.0755 -7.0438 1.1497 42 1 0.9863 -6.1055 2.0509 43 1 0.1972 -3.9011 1.2935 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:52 Heat of formation + Delta-G solvation = -98.468283 kcal Electronic energy + Delta-G solvation = -28468.501434 eV Core-core repulsion = 24671.478714 eV Total energy + Delta-G solvation = -3797.022720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.95590 -41.01494 -39.53869 -37.98131 -37.09208 -35.67188 -33.98249 -32.27206 -31.78106 -31.69228 -30.16143 -26.98058 -25.47313 -24.55245 -23.28500 -23.04990 -22.29287 -21.58853 -20.36884 -19.05548 -18.94104 -17.84433 -17.59839 -17.05794 -16.85205 -16.46605 -16.10871 -15.93371 -15.69315 -15.22922 -14.91358 -14.79182 -14.46268 -14.23416 -14.15567 -13.69063 -13.50271 -13.45319 -13.15246 -13.04622 -12.90326 -12.69045 -12.56204 -12.47732 -12.34382 -12.19170 -12.03639 -11.96405 -11.81618 -11.51505 -11.11596 -11.07769 -10.99562 -10.13695 -9.73502 -9.28307 -8.84388 -8.06886 -5.88175 0.52390 0.56687 1.15718 1.40277 1.46184 1.50984 2.09152 2.37528 2.57343 2.97863 3.12503 3.28542 3.62601 3.74521 3.93534 4.12445 4.15532 4.20218 4.28829 4.34751 4.37517 4.43457 4.52768 4.58911 4.67137 4.70405 4.76225 4.80057 4.96521 5.04107 5.06834 5.14869 5.21393 5.23737 5.34338 5.41322 5.47252 5.57389 5.59864 5.67662 5.82994 5.84931 6.10073 6.23101 6.99208 6.99763 7.27875 7.77495 8.48454 8.88609 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.007270 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.277857 B = 3850.326456 C = 5236.240480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.353 4.353 8 H 0.078 0.922 9 N -0.438 5.438 10 C 0.453 3.547 11 O -0.529 6.529 12 C -0.093 4.093 13 H 0.079 0.921 14 C -0.088 4.088 15 C -0.137 4.137 16 C -0.091 4.091 17 C -0.079 4.079 18 H 0.082 0.918 19 C 0.495 3.505 20 O -0.539 6.539 21 O -0.509 6.509 22 C -0.080 4.080 23 C 0.140 3.860 24 C -0.142 4.142 25 C -0.108 4.108 26 C -0.126 4.126 27 C -0.105 4.105 28 C -0.144 4.144 29 H 0.257 0.743 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.426 0.574 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -12.510 -5.812 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.095 0.905 9 N -0.157 5.157 10 C 0.243 3.757 11 O -0.406 6.406 12 C -0.115 4.115 13 H 0.097 0.903 14 C -0.126 4.126 15 C -0.175 4.175 16 C -0.129 4.129 17 C -0.098 4.098 18 H 0.100 0.900 19 C 0.339 3.661 20 O -0.429 6.429 21 O -0.323 6.323 22 C -0.118 4.118 23 C 0.049 3.951 24 C -0.162 4.162 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.123 4.123 28 C -0.164 4.164 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.288 0.712 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.163 0.837 41 H 0.175 0.825 42 H 0.168 0.832 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.684 -11.878 -5.676 13.182 hybrid contribution 0.702 1.066 -0.099 1.281 sum 1.386 -10.812 -5.775 12.336 Atomic orbital electron populations 1.70192 1.07509 1.27633 1.40894 1.25517 0.95313 1.01378 0.97775 0.85373 0.78763 0.79391 0.77485 1.21556 1.21153 1.18773 1.19338 0.97230 0.86910 1.44453 0.90451 1.41298 1.33024 1.02677 1.38683 1.20136 0.83229 0.90092 0.82275 1.90337 1.67740 1.30755 1.51779 1.21158 0.96371 0.95043 0.98923 0.90270 1.21242 0.94516 0.99745 0.97090 1.21893 1.00409 1.00548 0.94600 1.21406 0.92529 1.00739 0.98203 1.21007 0.97535 0.98157 0.93123 0.89980 1.23416 0.76297 0.85259 0.81128 1.90671 1.54024 1.20768 1.77463 1.84532 1.68777 1.50508 1.28458 1.21282 1.00676 0.97088 0.92736 1.18225 0.94805 0.86813 0.95210 1.21373 0.96610 0.97123 1.01076 1.21294 1.00534 0.93347 0.97448 1.21466 0.94753 1.01012 0.97183 1.21319 0.97048 0.94176 0.99785 1.21480 1.00702 0.96698 0.97484 0.93350 0.89721 0.93957 0.90221 0.91178 0.90390 0.90097 0.71189 0.91765 0.89490 0.87769 0.83667 0.82520 0.83226 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.95 10.40 21.65 0.23 -48.73 16 2 C 0.01 0.45 4.36 84.91 0.37 0.82 16 3 Si 0.96 45.74 29.62 68.60 2.03 47.77 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.35 -19.75 9.47 84.02 0.80 -18.96 16 8 H 0.08 4.27 7.93 -2.91 -0.02 4.25 16 9 N -0.44 -22.14 2.65 -458.90 -1.22 -23.36 16 10 C 0.45 22.35 4.82 87.66 0.42 22.77 16 11 O -0.53 -29.47 9.49 -3.02 -0.03 -29.50 16 12 C -0.09 -3.63 2.29 -11.54 -0.03 -3.66 16 13 H 0.08 3.04 6.29 -2.38 -0.01 3.03 16 14 C -0.09 -3.11 5.25 30.60 0.16 -2.95 16 15 C -0.14 -4.76 5.63 30.60 0.17 -4.59 16 16 C -0.09 -2.68 5.13 30.59 0.16 -2.52 16 17 C -0.08 -2.65 2.41 -11.54 -0.03 -2.67 16 18 H 0.08 3.35 7.10 -2.39 -0.02 3.33 16 19 C 0.50 14.84 7.63 71.24 0.54 15.38 16 20 O -0.54 -18.06 16.74 21.95 0.37 -17.69 16 21 O -0.51 -11.86 13.33 -51.40 -0.69 -12.55 16 22 C -0.08 -2.76 3.90 30.59 0.12 -2.64 16 23 C 0.14 5.90 3.36 38.22 0.13 6.03 16 24 C -0.14 -5.26 8.49 22.41 0.19 -5.07 16 25 C -0.11 -3.06 10.04 22.25 0.22 -2.84 16 26 C -0.13 -3.12 10.04 22.30 0.22 -2.90 16 27 C -0.10 -2.91 10.04 22.25 0.22 -2.69 16 28 C -0.14 -5.33 8.32 22.41 0.19 -5.14 16 29 H 0.26 14.85 8.32 -92.71 -0.77 14.08 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 3.54 4.98 -2.52 -0.01 3.53 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.13 8.11 -2.39 -0.02 2.11 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.43 5.49 9.10 -74.06 -0.67 4.82 16 37 H 0.06 2.38 5.47 -2.39 -0.01 2.37 16 38 H 0.09 2.65 8.10 -2.39 -0.02 2.63 16 39 H 0.10 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 41 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 43 H 0.10 4.12 7.98 -2.91 -0.02 4.09 16 Total: -1.00 -72.28 342.91 4.92 -67.36 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.36 Total: 28.32 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 3.86 Total: -11.63 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -0.99 Total: -72.08 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -0.35 Total: -59.74 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -72.28 4.92 -67.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.108 kcal (2) G-P(sol) polarization free energy of solvation -72.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds