Wall clock time and date at job start Tue Mar 31 2020 12:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 110.65741 * 2 1 4 4 O 1.20827 * 120.00316 * 118.26224 * 3 2 1 5 5 O 1.34236 * 119.99816 * 298.26200 * 3 2 1 6 6 C 1.54618 * 110.74295 * 236.80834 * 2 1 3 7 7 C 1.54005 * 105.04347 * 263.33180 * 6 2 1 8 8 N 1.47484 * 107.08562 * 1.30087 * 7 6 2 9 9 C 1.34780 * 127.03509 * 154.51389 * 8 7 6 10 10 O 1.21279 * 119.99962 * 180.02562 * 9 8 7 11 11 C 1.50696 * 119.99810 * 0.02854 * 9 8 7 12 12 C 1.50700 * 109.47105 * 179.97438 * 11 9 8 13 13 C 1.37634 * 120.12947 * 265.00368 * 12 11 9 14 14 C 1.38617 * 120.24891 * 179.97438 * 13 12 11 15 15 C 1.38659 * 120.50129 * 359.97438 * 14 13 12 16 16 C 1.37600 * 120.24526 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12658 * 85.25608 * 12 11 9 18 18 C 1.41401 * 120.24067 * 0.02562 * 17 12 11 19 19 H 1.07990 * 120.00395 * 330.00553 * 18 17 12 20 20 C 1.39950 * 119.99504 * 150.01031 * 18 17 12 21 21 N 1.30821 * 119.99760 * 162.08641 * 20 18 17 22 22 Si 1.86805 * 120.00101 * 342.07895 * 20 18 17 23 23 H 1.48498 * 109.46722 * 95.39543 * 22 20 18 24 24 H 1.48501 * 109.47136 * 215.39649 * 22 20 18 25 25 H 1.48503 * 109.47111 * 335.39326 * 22 20 18 26 26 C 1.48117 * 105.93296 * 334.78306 * 8 7 6 27 27 H 1.08996 * 109.47239 * 181.73790 * 1 2 3 28 28 H 1.09000 * 109.47673 * 301.73710 * 1 2 3 29 29 H 1.08999 * 109.47468 * 61.74154 * 1 2 3 30 30 H 0.96704 * 116.99800 * 180.02562 * 5 3 2 31 31 H 1.08999 * 110.32625 * 144.43797 * 6 2 1 32 32 H 1.08996 * 110.41355 * 22.26444 * 6 2 1 33 33 H 1.09002 * 109.90960 * 241.94707 * 7 6 2 34 34 H 1.08996 * 109.91263 * 120.66672 * 7 6 2 35 35 H 1.09005 * 109.46891 * 59.99815 * 11 9 8 36 36 H 1.08996 * 109.47321 * 300.00207 * 11 9 8 37 37 H 1.08003 * 119.87740 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.75186 * 180.02562 * 14 13 12 39 39 H 1.07995 * 119.87739 * 180.02562 * 15 14 13 40 40 H 1.08000 * 120.12345 * 179.97438 * 16 15 14 41 41 H 0.97003 * 119.99982 * 179.97438 * 21 20 18 42 42 H 1.08998 * 110.66557 * 157.50671 * 26 8 7 43 43 H 1.09001 * 110.66242 * 280.62598 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0616 1.4101 0.0000 4 8 2.7383 1.8007 0.9216 5 8 1.7833 2.2323 -1.0240 6 6 2.0775 -0.7916 -1.2100 7 6 2.3806 -2.1989 -0.6630 8 7 1.9938 -2.2032 0.7602 9 6 1.6326 -3.2702 1.5001 10 8 1.3369 -3.1266 2.6675 11 6 1.5961 -4.6417 0.8767 12 6 1.1646 -5.6514 1.9090 13 6 2.1074 -6.3596 2.6189 14 6 1.7133 -7.2885 3.5694 15 6 0.3679 -7.5149 3.8166 16 6 -0.5919 -6.8184 3.1188 17 6 -0.2035 -5.8775 2.1470 18 6 -1.1810 -5.1601 1.4195 19 1 -0.9674 -4.1618 1.0673 20 6 -2.4254 -5.7437 1.1560 21 7 -3.4389 -4.9937 0.8071 22 14 -2.6391 -7.5937 1.3022 23 1 -3.1749 -7.9253 2.6469 24 1 -3.5870 -8.0663 0.2613 25 1 -1.3254 -8.2602 1.1146 26 6 2.0772 -0.7939 1.2084 27 1 -0.3633 -1.0271 0.0312 28 1 -0.3634 0.5406 0.8740 29 1 -0.3634 0.4865 -0.9052 30 1 2.1467 3.1274 -0.9796 31 1 2.9892 -0.3267 -1.5853 32 1 1.3281 -0.8456 -1.9996 33 1 3.4451 -2.4132 -0.7590 34 1 1.7990 -2.9423 -1.2081 35 1 2.5891 -4.9002 0.5090 36 1 0.8892 -4.6451 0.0471 37 1 3.1582 -6.1909 2.4348 38 1 2.4598 -7.8394 4.1221 39 1 0.0722 -8.2407 4.5597 40 1 -1.6393 -6.9967 3.3126 41 1 -4.3013 -5.3982 0.6241 42 1 1.4538 -0.6324 2.0879 43 1 3.1112 -0.5157 1.4123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833554399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:07 Heat of formation + Delta-G solvation = -108.100129 kcal Electronic energy + Delta-G solvation = -26879.376205 eV Core-core repulsion = 23081.935817 eV Total energy + Delta-G solvation = -3797.440388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00441 -39.47281 -38.03558 -36.94149 -36.30699 -33.56557 -32.94907 -31.71536 -30.29437 -29.72726 -27.72896 -26.23495 -24.99294 -24.23295 -22.80323 -21.37491 -20.34962 -19.75127 -18.88782 -17.98556 -17.32337 -17.01830 -16.53838 -15.85911 -15.61294 -15.21262 -14.85491 -14.43494 -14.33056 -14.14149 -13.69217 -13.59483 -13.41365 -12.96058 -12.70582 -12.47141 -12.29581 -12.13245 -11.96359 -11.87155 -11.83862 -11.70991 -11.37950 -11.22289 -11.10415 -10.95838 -10.78688 -10.71071 -10.50067 -10.22611 -9.68804 -9.54434 -9.24469 -9.10535 -8.44117 -7.57035 -7.47684 -6.91711 -4.45548 1.96539 2.52233 2.69435 2.75480 3.14248 3.21373 3.26770 3.34136 3.41324 4.00766 4.10537 4.36323 4.54044 4.60299 5.00208 5.05565 5.10580 5.22323 5.44949 5.53656 5.62391 5.67933 5.73557 5.74472 5.82609 5.85895 5.92909 5.96770 6.11620 6.17083 6.21102 6.23992 6.30044 6.46888 6.61157 6.75208 6.97849 7.23338 7.45481 7.65104 7.69017 7.77104 7.87754 7.94108 8.17137 8.37973 8.70676 8.76981 8.84964 10.10415 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.003920 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.309979 B = 7140.794857 C = 8137.422534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C 0.497 3.503 4 O -0.511 6.511 5 O -0.512 6.512 6 C -0.117 4.117 7 C 0.102 3.898 8 N -0.631 5.631 9 C 0.538 3.462 10 O -0.515 6.515 11 C -0.067 4.067 12 C -0.168 4.168 13 C -0.069 4.069 14 C -0.242 4.242 15 C -0.080 4.080 16 C -0.233 4.233 17 C 0.110 3.890 18 C -0.444 4.444 19 H 0.089 0.911 20 C 0.086 3.914 21 N -0.810 5.810 22 Si 0.909 3.091 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.244 1.244 26 C 0.126 3.874 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.409 0.591 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.283 0.717 42 H 0.092 0.908 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.651 8.640 -8.532 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C 0.339 3.661 4 O -0.399 6.399 5 O -0.323 6.323 6 C -0.155 4.155 7 C -0.022 4.022 8 N -0.369 5.369 9 C 0.329 3.671 10 O -0.388 6.388 11 C -0.107 4.107 12 C -0.170 4.170 13 C -0.087 4.087 14 C -0.261 4.261 15 C -0.098 4.098 16 C -0.252 4.252 17 C 0.107 3.893 18 C -0.473 4.473 19 H 0.106 0.894 20 C -0.133 4.133 21 N -0.434 5.434 22 Si 0.735 3.265 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.167 1.167 26 C 0.003 3.997 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.267 0.733 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.210 8.386 -7.669 14.019 hybrid contribution -0.045 0.058 0.085 0.112 sum 8.165 8.443 -7.584 13.981 Atomic orbital electron populations 1.21798 0.89949 1.04663 1.02834 1.21524 0.98873 0.87561 0.99188 1.23137 0.76475 0.87780 0.78743 1.90737 1.36578 1.76608 1.35956 1.84550 1.72678 1.28180 1.46893 1.22592 1.02104 0.94442 0.96379 1.22064 1.00499 0.97220 0.82425 1.48901 1.69997 1.06684 1.11313 1.20886 0.74960 0.85109 0.86180 1.90712 1.46367 1.85180 1.16523 1.20267 1.01877 0.89372 0.99167 1.19069 0.93381 1.02191 1.02348 1.20434 0.96751 0.95937 0.95561 1.20334 0.94893 1.05673 1.05180 1.20606 0.93461 0.97847 0.97924 1.21002 0.97502 1.04765 1.01936 1.17482 0.91686 0.89982 0.90164 1.19396 0.95347 1.02372 1.30149 0.89353 1.26137 0.94543 1.00967 0.91637 1.69703 1.01418 1.38271 1.34058 0.86359 0.79687 0.82797 0.77626 1.19770 1.21994 1.16693 1.22132 1.01621 0.80537 0.95390 0.89833 0.91847 0.91064 0.73274 0.90260 0.88916 0.91339 0.89718 0.90323 0.88111 0.89095 0.88998 0.89007 0.88322 0.90616 0.88992 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.44 37.15 0.31 -1.30 16 2 C -0.07 -0.79 0.89 -153.97 -0.14 -0.93 16 3 C 0.50 5.52 6.85 36.01 0.25 5.76 16 4 O -0.51 -7.17 16.54 -18.75 -0.31 -7.48 16 5 O -0.51 -4.09 13.38 -39.27 -0.53 -4.62 16 6 C -0.12 -1.08 6.06 -25.36 -0.15 -1.23 16 7 C 0.10 1.10 6.76 -2.98 -0.02 1.08 16 8 N -0.63 -9.69 3.22 -169.98 -0.55 -10.24 16 9 C 0.54 10.64 7.53 -10.99 -0.08 10.56 16 10 O -0.51 -12.61 16.24 5.56 0.09 -12.52 16 11 C -0.07 -1.27 4.27 -29.04 -0.12 -1.40 16 12 C -0.17 -3.86 4.43 -103.91 -0.46 -4.32 16 13 C -0.07 -1.48 9.66 -39.66 -0.38 -1.87 16 14 C -0.24 -5.23 10.05 -39.29 -0.39 -5.63 16 15 C -0.08 -1.82 10.02 -39.66 -0.40 -2.21 16 16 C -0.23 -5.82 7.17 -38.87 -0.28 -6.10 16 17 C 0.11 2.81 5.09 -106.82 -0.54 2.26 16 18 C -0.44 -11.80 8.56 -37.74 -0.32 -12.12 16 19 H 0.09 2.45 7.00 -52.49 -0.37 2.09 16 20 C 0.09 2.22 5.41 -17.34 -0.09 2.13 16 21 N -0.81 -21.32 13.93 55.55 0.77 -20.55 16 22 Si 0.91 20.73 24.52 -169.99 -4.17 16.56 16 23 H -0.27 -6.13 6.72 56.52 0.38 -5.75 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.24 -5.66 6.86 56.52 0.39 -5.27 16 26 C 0.13 1.82 5.56 -2.31 -0.01 1.81 16 27 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.41 1.53 9.10 45.56 0.41 1.94 16 31 H 0.08 0.61 7.84 -51.93 -0.41 0.20 16 32 H 0.09 0.75 7.86 -51.93 -0.41 0.34 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.87 7.54 -51.93 -0.39 0.48 16 35 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 36 H 0.10 1.88 6.89 -51.93 -0.36 1.53 16 37 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.10 2.46 4.77 -52.49 -0.25 2.21 16 41 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 42 H 0.09 1.52 7.75 -51.93 -0.40 1.12 16 43 H 0.08 1.11 7.51 -51.93 -0.39 0.72 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -33.25 354.61 -7.30 -40.55 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.11 Total: 6.48 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.85 Total: -13.52 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: 0.23 Total: -30.79 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.75 Total: -24.62 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.17 Total: 16.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.25 -7.30 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833554399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.555 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds