Wall clock time and date at job start Tue Mar 31 2020 11:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86804 * 119.99585 * 2 1 4 4 H 1.48498 * 109.47080 * 274.69041 * 3 2 1 5 5 H 1.48497 * 109.47333 * 34.69513 * 3 2 1 6 6 H 1.48506 * 109.46974 * 154.69173 * 3 2 1 7 7 C 1.39940 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99990 * 197.70467 * 7 2 1 9 9 C 1.41436 * 119.99812 * 17.71163 * 7 2 1 10 10 C 1.40786 * 120.17060 * 204.33533 * 9 7 2 11 11 C 1.37721 * 120.04765 * 180.02562 * 10 9 7 12 12 C 1.38358 * 120.41873 * 0.02562 * 11 10 9 13 13 C 1.39928 * 120.35173 * 0.02562 * 12 11 10 14 14 C 1.47769 * 120.02910 * 179.97438 * 13 12 11 15 15 O 1.21461 * 120.00030 * 179.97438 * 14 13 12 16 16 O 1.34709 * 119.99897 * 359.72735 * 14 13 12 17 17 C 1.45202 * 116.99989 * 180.27791 * 16 14 13 18 18 C 1.52999 * 109.47033 * 179.97438 * 17 16 14 19 19 H 1.08998 * 108.56908 * 302.93229 * 18 17 16 20 20 C 1.51783 * 108.61590 * 60.73727 * 18 17 16 21 21 C 1.53026 * 110.87235 * 188.12225 * 20 18 17 22 22 N 1.47189 * 108.64518 * 273.52491 * 21 20 18 23 23 C 1.33372 * 120.43137 * 71.98910 * 22 21 20 24 24 O 1.21285 * 119.89671 * 179.70703 * 23 22 21 25 25 C 1.51422 * 120.21197 * 359.68079 * 23 22 21 26 26 C 1.51794 * 108.61633 * 184.99577 * 18 17 16 27 27 C 1.39083 * 119.93834 * 0.25374 * 13 12 11 28 28 H 0.96998 * 120.00770 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.98070 * 0.04663 * 10 9 7 30 30 H 1.08002 * 119.78726 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.82391 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.46911 * 299.99380 * 17 16 14 33 33 H 1.08994 * 109.47340 * 59.99298 * 17 16 14 34 34 H 1.09004 * 109.19551 * 308.47370 * 20 18 17 35 35 H 1.08997 * 109.19537 * 67.75401 * 20 18 17 36 36 H 1.09006 * 109.61998 * 153.77928 * 21 20 18 37 37 H 1.09005 * 109.75516 * 33.35223 * 21 20 18 38 38 H 0.97000 * 119.78666 * 251.97020 * 22 21 20 39 39 H 1.09003 * 109.63438 * 169.07882 * 25 23 22 40 40 H 1.09000 * 109.63386 * 48.48345 * 25 23 22 41 41 H 1.09002 * 109.22188 * 292.39872 * 26 18 17 42 42 H 1.08999 * 109.21868 * 51.78047 * 26 18 17 43 43 H 1.08006 * 120.20031 * 179.70517 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3904 2.1038 -1.3954 5 1 1.4927 2.6220 0.7969 6 1 3.5858 1.4137 0.5985 7 6 2.0080 -1.2119 0.0005 8 1 3.0496 -1.2339 0.2850 9 6 1.3511 -2.4079 -0.3716 10 6 1.8280 -3.6499 0.0890 11 6 1.1867 -4.8129 -0.2753 12 6 0.0726 -4.7715 -1.0946 13 6 -0.4154 -3.5466 -1.5631 14 6 -1.6055 -3.5107 -2.4382 15 8 -2.0290 -2.4471 -2.8442 16 8 -2.2179 -4.6579 -2.7897 17 6 -3.3775 -4.5473 -3.6566 18 6 -3.9334 -5.9432 -3.9453 19 1 -3.1417 -6.5474 -4.3882 20 6 -4.3483 -6.5807 -2.6317 21 6 -4.7245 -8.0502 -2.8337 22 7 -6.1437 -8.1242 -3.2168 23 6 -6.5378 -7.7308 -4.4287 24 8 -7.7090 -7.8011 -4.7360 25 6 -5.5277 -7.1963 -5.4221 26 6 -5.0650 -5.8161 -4.9490 27 6 0.2243 -2.3634 -1.2091 28 1 -0.4851 0.8400 0.0004 29 1 2.6971 -3.6906 0.7288 30 1 1.5560 -5.7634 0.0808 31 1 -0.4226 -5.6895 -1.3747 32 1 -4.1423 -3.9458 -3.1653 33 1 -3.0870 -4.0714 -4.5931 34 1 -3.5208 -6.5165 -1.9251 35 1 -5.2061 -6.0432 -2.2277 36 1 -4.5672 -8.5992 -1.9053 37 1 -4.1096 -8.4828 -3.6230 38 1 -6.7967 -8.4616 -2.5837 39 1 -5.9909 -7.1102 -6.4050 40 1 -4.6732 -7.8709 -5.4746 41 1 -5.9023 -5.2974 -4.4821 42 1 -4.7200 -5.2401 -5.8076 43 1 -0.1460 -1.4160 -1.5721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835523184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:43 Heat of formation + Delta-G solvation = -124.773486 kcal Electronic energy + Delta-G solvation = -25754.988991 eV Core-core repulsion = 21956.825592 eV Total energy + Delta-G solvation = -3798.163399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54908 -39.75948 -37.70580 -37.11094 -35.70755 -34.38167 -33.79470 -31.56886 -30.41613 -29.56695 -28.55114 -25.51272 -24.86637 -24.08542 -22.72407 -21.04612 -20.59402 -20.10527 -19.68120 -17.88007 -17.50886 -17.15520 -16.46463 -16.06878 -15.96627 -15.23777 -14.92653 -14.71905 -14.48550 -14.34247 -13.94908 -13.80360 -13.40264 -13.15411 -12.91151 -12.67535 -12.57846 -12.53818 -12.10147 -11.81763 -11.72940 -11.27270 -11.21834 -11.17975 -11.01488 -10.85624 -10.80254 -10.56826 -10.24829 -10.22846 -10.01547 -9.78163 -9.52957 -9.38609 -9.29945 -7.80275 -7.61712 -6.88153 -4.49308 1.92561 2.40740 2.72730 3.03316 3.04094 3.06874 3.08985 3.13426 3.54913 3.86032 4.16947 4.35400 4.41663 4.51407 4.52752 4.86512 4.92787 5.05682 5.10280 5.23251 5.31429 5.39040 5.47180 5.48823 5.54260 5.67326 5.72109 5.76177 5.98479 6.06850 6.08968 6.33114 6.52567 6.58265 6.87106 6.89499 6.93866 6.98522 7.11602 7.25082 7.62215 7.69355 7.85398 7.98460 8.04718 8.38948 8.50207 8.71502 8.73473 10.07152 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002542 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.565986 B =11010.521687 C =11702.562497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.202 4.202 11 C -0.104 4.104 12 C -0.194 4.194 13 C -0.115 4.115 14 C 0.512 3.488 15 O -0.518 6.518 16 O -0.355 6.355 17 C 0.068 3.932 18 C -0.087 4.087 19 H 0.084 0.916 20 C -0.139 4.139 21 C 0.108 3.892 22 N -0.724 5.724 23 C 0.518 3.482 24 O -0.558 6.558 25 C -0.136 4.136 26 C -0.108 4.108 27 C -0.090 4.090 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.399 0.601 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 -12.330 -5.942 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.222 4.222 11 C -0.122 4.122 12 C -0.214 4.214 13 C -0.116 4.116 14 C 0.359 3.641 15 O -0.407 6.407 16 O -0.273 6.273 17 C -0.007 4.007 18 C -0.105 4.105 19 H 0.103 0.897 20 C -0.178 4.178 21 C -0.016 4.016 22 N -0.376 5.376 23 C 0.304 3.696 24 O -0.436 6.436 25 C -0.176 4.176 26 C -0.146 4.146 27 C -0.110 4.110 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.235 0.765 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.246 -11.809 -6.368 15.248 hybrid contribution 0.029 0.785 0.332 0.853 sum -7.217 -11.024 -6.036 14.493 Atomic orbital electron populations 1.69771 1.07617 1.29848 1.33819 1.25973 0.94784 1.01637 0.92217 0.86239 0.80481 0.80395 0.79316 1.19189 1.20164 1.18463 1.19596 0.98242 0.90901 1.40082 0.89890 1.17547 0.91163 0.92627 0.89368 1.21186 1.03149 0.92723 1.05113 1.20510 0.96132 0.96891 0.98658 1.20532 1.00175 0.95229 1.05485 1.18830 0.94798 0.95903 1.02055 1.21875 0.83080 0.80903 0.78273 1.90768 1.65106 1.31334 1.53521 1.86555 1.42035 1.36068 1.62594 1.22980 0.86653 0.97116 0.93944 1.20854 0.97817 0.95799 0.96073 0.89718 1.21898 1.03121 0.94984 0.97755 1.21842 0.80857 0.97159 1.01710 1.46024 1.10470 1.65515 1.15610 1.20614 0.89437 0.76436 0.83071 1.90753 1.19136 1.55566 1.78150 1.21957 0.99007 0.97870 0.98772 1.21202 0.98232 0.95897 0.99299 1.21660 0.96533 0.96054 0.96735 0.90389 0.88355 0.88554 0.87902 0.91540 0.91383 0.88800 0.91089 0.89169 0.90311 0.76473 0.88231 0.88956 0.91079 0.89948 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.21 10.96 55.55 0.61 -19.61 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.67 9.05 -37.73 -0.34 -12.01 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.10 2.44 5.57 -106.88 -0.60 1.84 16 10 C -0.20 -4.60 9.78 -38.81 -0.38 -4.98 16 11 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 12 C -0.19 -4.03 9.62 -38.90 -0.37 -4.40 16 13 C -0.11 -2.64 5.87 -105.05 -0.62 -3.26 16 14 C 0.51 10.91 7.90 34.63 0.27 11.18 16 15 O -0.52 -12.25 16.12 -19.24 -0.31 -12.56 16 16 O -0.35 -5.97 8.58 -40.52 -0.35 -6.32 16 17 C 0.07 0.89 4.79 37.16 0.18 1.06 16 18 C -0.09 -0.79 1.97 -91.85 -0.18 -0.97 16 19 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 20 C -0.14 -1.20 4.95 -27.34 -0.14 -1.33 16 21 C 0.11 0.68 6.46 -3.65 -0.02 0.66 16 22 N -0.72 -5.74 5.27 -59.88 -0.32 -6.05 16 23 C 0.52 5.39 7.06 -11.26 -0.08 5.31 16 24 O -0.56 -8.24 17.92 5.55 0.10 -8.14 16 25 C -0.14 -1.05 5.57 -27.50 -0.15 -1.21 16 26 C -0.11 -0.88 4.91 -27.31 -0.13 -1.02 16 27 C -0.09 -2.33 8.24 -38.43 -0.32 -2.64 16 28 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 29 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.10 1.85 7.59 -52.48 -0.40 1.45 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.09 0.92 7.35 -51.93 -0.38 0.54 16 35 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.42 6.72 -51.93 -0.35 0.07 16 38 H 0.40 2.85 8.91 -40.82 -0.36 2.49 16 39 H 0.10 0.75 8.13 -51.93 -0.42 0.32 16 40 H 0.09 0.54 6.77 -51.93 -0.35 0.19 16 41 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 42 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 43 H 0.14 3.73 5.75 -52.48 -0.30 3.43 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -30.91 356.39 -9.17 -40.08 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.88 Total: 6.61 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.37 Total: -12.60 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.29 Total: -25.66 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.56 Total: -27.02 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.91 -9.17 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835523184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.691 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds