Wall clock time and date at job start Tue Mar 31 2020 11:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86804 * 119.99585 * 2 1 4 4 H 1.48498 * 109.47080 * 274.69041 * 3 2 1 5 5 H 1.48497 * 109.47333 * 34.69513 * 3 2 1 6 6 H 1.48506 * 109.46974 * 154.69173 * 3 2 1 7 7 C 1.39940 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99990 * 197.70467 * 7 2 1 9 9 C 1.41436 * 119.99812 * 17.71163 * 7 2 1 10 10 C 1.40786 * 120.17060 * 204.33533 * 9 7 2 11 11 C 1.37721 * 120.04765 * 180.02562 * 10 9 7 12 12 C 1.38358 * 120.41873 * 0.02562 * 11 10 9 13 13 C 1.39928 * 120.35173 * 0.02562 * 12 11 10 14 14 C 1.47769 * 120.02910 * 179.97438 * 13 12 11 15 15 O 1.21461 * 120.00030 * 179.97438 * 14 13 12 16 16 O 1.34709 * 119.99897 * 359.72735 * 14 13 12 17 17 C 1.45202 * 116.99989 * 180.27791 * 16 14 13 18 18 C 1.52999 * 109.47033 * 179.97438 * 17 16 14 19 19 H 1.08998 * 108.56908 * 302.93229 * 18 17 16 20 20 C 1.51783 * 108.61590 * 60.73727 * 18 17 16 21 21 C 1.53026 * 110.87235 * 188.12225 * 20 18 17 22 22 N 1.47189 * 108.64518 * 273.52491 * 21 20 18 23 23 C 1.33372 * 120.43137 * 71.98910 * 22 21 20 24 24 O 1.21285 * 119.89671 * 179.70703 * 23 22 21 25 25 C 1.51422 * 120.21197 * 359.68079 * 23 22 21 26 26 C 1.51794 * 108.61633 * 184.99577 * 18 17 16 27 27 C 1.39083 * 119.93834 * 0.25374 * 13 12 11 28 28 H 0.96998 * 120.00770 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.98070 * 0.04663 * 10 9 7 30 30 H 1.08002 * 119.78726 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.82391 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.46911 * 299.99380 * 17 16 14 33 33 H 1.08994 * 109.47340 * 59.99298 * 17 16 14 34 34 H 1.09004 * 109.19551 * 308.47370 * 20 18 17 35 35 H 1.08997 * 109.19537 * 67.75401 * 20 18 17 36 36 H 1.09006 * 109.61998 * 153.77928 * 21 20 18 37 37 H 1.09005 * 109.75516 * 33.35223 * 21 20 18 38 38 H 0.97000 * 119.78666 * 251.97020 * 22 21 20 39 39 H 1.09003 * 109.63438 * 169.07882 * 25 23 22 40 40 H 1.09000 * 109.63386 * 48.48345 * 25 23 22 41 41 H 1.09002 * 109.22188 * 292.39872 * 26 18 17 42 42 H 1.08999 * 109.21868 * 51.78047 * 26 18 17 43 43 H 1.08006 * 120.20031 * 179.70517 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3904 2.1038 -1.3954 5 1 1.4927 2.6220 0.7969 6 1 3.5858 1.4137 0.5985 7 6 2.0080 -1.2119 0.0005 8 1 3.0496 -1.2339 0.2850 9 6 1.3511 -2.4079 -0.3716 10 6 1.8280 -3.6499 0.0890 11 6 1.1867 -4.8129 -0.2753 12 6 0.0726 -4.7715 -1.0946 13 6 -0.4154 -3.5466 -1.5631 14 6 -1.6055 -3.5107 -2.4382 15 8 -2.0290 -2.4471 -2.8442 16 8 -2.2179 -4.6579 -2.7897 17 6 -3.3775 -4.5473 -3.6566 18 6 -3.9334 -5.9432 -3.9453 19 1 -3.1417 -6.5474 -4.3882 20 6 -4.3483 -6.5807 -2.6317 21 6 -4.7245 -8.0502 -2.8337 22 7 -6.1437 -8.1242 -3.2168 23 6 -6.5378 -7.7308 -4.4287 24 8 -7.7090 -7.8011 -4.7360 25 6 -5.5277 -7.1963 -5.4221 26 6 -5.0650 -5.8161 -4.9490 27 6 0.2243 -2.3634 -1.2091 28 1 -0.4851 0.8400 0.0004 29 1 2.6971 -3.6906 0.7288 30 1 1.5560 -5.7634 0.0808 31 1 -0.4226 -5.6895 -1.3747 32 1 -4.1423 -3.9458 -3.1653 33 1 -3.0870 -4.0714 -4.5931 34 1 -3.5208 -6.5165 -1.9251 35 1 -5.2061 -6.0432 -2.2277 36 1 -4.5672 -8.5992 -1.9053 37 1 -4.1096 -8.4828 -3.6230 38 1 -6.7967 -8.4616 -2.5837 39 1 -5.9909 -7.1102 -6.4050 40 1 -4.6732 -7.8709 -5.4746 41 1 -5.9023 -5.2974 -4.4821 42 1 -4.7200 -5.2401 -5.8076 43 1 -0.1460 -1.4160 -1.5721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835523184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:42 Heat of formation + Delta-G solvation = -142.908104 kcal Electronic energy + Delta-G solvation = -25755.775367 eV Core-core repulsion = 21956.825592 eV Total energy + Delta-G solvation = -3798.949775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57904 -41.06156 -39.24023 -38.31541 -37.07753 -35.61576 -35.15454 -32.45982 -32.03512 -31.33837 -29.42931 -27.29007 -25.96510 -24.89078 -24.12420 -22.82474 -21.53268 -21.33601 -20.60509 -19.59085 -18.29051 -18.20025 -17.87739 -17.58462 -17.30907 -16.70981 -16.44094 -15.95664 -15.41979 -15.27544 -15.17858 -14.95524 -14.71613 -14.51128 -14.31494 -13.93620 -13.65055 -13.51607 -13.35649 -13.07683 -12.97677 -12.83267 -12.55678 -12.49171 -12.20205 -12.10989 -11.94963 -11.94733 -11.63088 -11.51823 -11.36916 -11.23537 -11.10033 -10.84361 -10.10814 -9.59383 -9.42217 -8.68445 -6.39143 0.16058 0.98377 1.37548 1.46611 1.51750 1.59483 1.73870 1.82981 2.18784 2.41588 2.73298 3.47901 3.53275 3.64816 3.72374 3.76284 4.06425 4.21830 4.23958 4.34707 4.42503 4.46734 4.49496 4.55196 4.66364 4.67617 4.77826 4.83844 4.89596 5.04620 5.06725 5.10469 5.15792 5.23585 5.29552 5.30328 5.41192 5.47673 5.84441 5.89024 5.91639 6.03051 6.25402 6.29853 6.54761 6.84002 6.88622 6.90967 7.24908 8.28946 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002542 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.565986 B =11010.521687 C =11702.562497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.495 4.495 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.203 4.203 11 C -0.100 4.100 12 C -0.174 4.174 13 C -0.129 4.129 14 C 0.515 3.485 15 O -0.551 6.551 16 O -0.339 6.339 17 C 0.060 3.940 18 C -0.076 4.076 19 H 0.106 0.894 20 C -0.139 4.139 21 C 0.112 3.888 22 N -0.716 5.716 23 C 0.510 3.490 24 O -0.610 6.610 25 C -0.128 4.128 26 C -0.104 4.104 27 C -0.126 4.126 28 H 0.287 0.713 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.402 0.598 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -15.003 -6.127 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.524 4.524 8 H 0.105 0.895 9 C 0.062 3.938 10 C -0.223 4.223 11 C -0.117 4.117 12 C -0.193 4.193 13 C -0.130 4.130 14 C 0.363 3.637 15 O -0.444 6.444 16 O -0.256 6.256 17 C -0.014 4.014 18 C -0.094 4.094 19 H 0.125 0.875 20 C -0.178 4.178 21 C -0.011 4.011 22 N -0.366 5.366 23 C 0.298 3.702 24 O -0.493 6.493 25 C -0.168 4.168 26 C -0.141 4.141 27 C -0.146 4.146 28 H 0.097 0.903 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.239 0.761 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.144 -14.529 -6.527 17.072 hybrid contribution -0.363 1.403 0.386 1.499 sum -6.507 -13.126 -6.142 15.886 Atomic orbital electron populations 1.69866 1.09220 1.30642 1.35584 1.26834 0.95398 1.04934 0.91311 0.85185 0.79424 0.75933 0.79190 1.19198 1.19526 1.17318 1.19866 0.98622 0.91987 1.41908 0.89546 1.17901 0.91765 0.94094 0.90062 1.21513 1.03486 0.92622 1.04680 1.20991 0.95303 0.97963 0.97494 1.20995 0.99498 0.95421 1.03406 1.19092 0.95373 0.96129 1.02399 1.21679 0.82806 0.81455 0.77754 1.90751 1.66000 1.32869 1.54737 1.86513 1.42844 1.33454 1.62784 1.23374 0.84953 1.00026 0.93007 1.20883 0.98494 0.93253 0.96772 0.87537 1.21886 1.02268 0.96538 0.97072 1.21980 0.79772 0.95675 1.03685 1.46076 1.11493 1.64091 1.14915 1.21129 0.89146 0.75908 0.83972 1.90730 1.21368 1.57953 1.79267 1.21942 0.99158 0.97652 0.98007 1.21152 0.97241 0.96410 0.99342 1.21462 0.98281 0.95989 0.98899 0.90268 0.86853 0.83941 0.84185 0.92729 0.91244 0.89532 0.92528 0.86866 0.88191 0.76146 0.87936 0.86126 0.92683 0.88728 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.84 10.96 21.82 0.24 -44.60 16 2 C 0.03 1.52 5.14 85.26 0.44 1.96 16 3 Si 0.98 38.47 29.59 68.60 2.03 40.50 16 4 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.49 -25.97 9.05 23.47 0.21 -25.75 16 8 H 0.09 4.27 7.91 -2.91 -0.02 4.24 16 9 C 0.06 3.34 5.57 -21.32 -0.12 3.23 16 10 C -0.20 -9.03 9.78 22.77 0.22 -8.80 16 11 C -0.10 -3.75 10.01 22.18 0.22 -3.53 16 12 C -0.17 -6.69 9.62 22.71 0.22 -6.47 16 13 C -0.13 -5.92 5.87 -20.14 -0.12 -6.04 16 14 C 0.52 22.03 7.90 70.34 0.56 22.58 16 15 O -0.55 -27.02 16.12 19.96 0.32 -26.70 16 16 O -0.34 -10.86 8.58 -56.19 -0.48 -11.34 16 17 C 0.06 1.51 4.79 71.98 0.34 1.85 16 18 C -0.08 -1.18 1.97 -11.59 -0.02 -1.20 16 19 H 0.11 1.27 7.88 -2.39 -0.02 1.25 16 20 C -0.14 -2.03 4.95 30.20 0.15 -1.88 16 21 C 0.11 0.99 6.46 86.26 0.56 1.55 16 22 N -0.72 -9.75 5.27 -462.53 -2.44 -12.19 16 23 C 0.51 9.85 7.06 88.10 0.62 10.48 16 24 O -0.61 -17.97 17.92 -3.05 -0.05 -18.02 16 25 C -0.13 -1.64 5.57 30.10 0.17 -1.47 16 26 C -0.10 -1.47 4.91 30.22 0.15 -1.32 16 27 C -0.13 -6.77 8.24 23.02 0.19 -6.58 16 28 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 29 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.14 4.33 7.59 -2.91 -0.02 4.31 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.74 8.07 -2.39 -0.02 1.72 16 34 H 0.09 1.43 7.35 -2.39 -0.02 1.41 16 35 H 0.06 1.00 8.05 -2.39 -0.02 0.98 16 36 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.10 0.55 6.72 -2.38 -0.02 0.53 16 38 H 0.40 5.07 8.91 -92.71 -0.83 4.25 16 39 H 0.10 1.31 8.13 -2.39 -0.02 1.29 16 40 H 0.12 0.87 6.77 -2.39 -0.02 0.86 16 41 H 0.05 0.97 7.86 -2.39 -0.02 0.96 16 42 H 0.09 1.15 8.05 -2.39 -0.02 1.13 16 43 H 0.10 6.08 5.75 -2.91 -0.02 6.06 16 Total: -1.00 -71.81 356.39 3.62 -68.19 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.21 Total: 25.56 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 3.79 Total: -21.40 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -2.20 Total: -56.79 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -0.22 Total: -56.06 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -71.81 3.62 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835523184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.714 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds