Wall clock time and date at job start Tue Mar 31 2020 11:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99955 * 2 1 4 4 H 1.48502 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46881 * 299.99289 * 3 2 1 6 6 H 1.48492 * 109.47301 * 59.99511 * 3 2 1 7 7 C 1.39935 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99834 * 196.80418 * 7 2 1 9 9 C 1.41405 * 119.99701 * 16.80637 * 7 2 1 10 10 C 1.40773 * 120.21396 * 25.16402 * 9 7 2 11 11 C 1.37638 * 119.88882 * 180.02562 * 10 9 7 12 12 C 1.38530 * 120.32286 * 0.02562 * 11 10 9 13 13 C 1.39252 * 120.42733 * 0.02562 * 12 11 10 14 14 N 1.39936 * 119.94850 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99994 * 145.79260 * 14 13 12 16 16 O 1.21290 * 119.99785 * 354.89174 * 15 14 13 17 17 C 1.50699 * 120.00147 * 174.89306 * 15 14 13 18 18 H 1.08996 * 110.04258 * 59.29785 * 17 15 14 19 19 C 1.54018 * 110.05710 * 297.83726 * 17 15 14 20 20 C 1.54310 * 106.57523 * 240.29011 * 19 17 15 21 21 C 1.54992 * 104.26704 * 23.48965 * 20 19 17 22 22 C 1.53649 * 110.10583 * 180.79245 * 17 15 14 23 23 O 1.43061 * 110.65106 * 337.36405 * 22 17 15 24 24 C 1.44951 * 104.61190 * 213.72420 * 23 22 17 25 25 C 1.54973 * 101.82512 * 35.40126 * 24 23 22 26 26 O 1.42688 * 110.84943 * 215.50878 * 22 17 15 27 27 C 1.38282 * 120.10412 * 0.23444 * 13 12 11 28 28 H 0.97005 * 119.99964 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.05655 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.84122 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.78979 * 179.97438 * 12 11 10 32 32 H 0.96992 * 120.00382 * 325.79806 * 14 13 12 33 33 H 1.09000 * 110.03877 * 359.57018 * 19 17 15 34 34 H 1.08998 * 110.03389 * 120.96255 * 19 17 15 35 35 H 1.09000 * 110.47507 * 142.18577 * 20 19 17 36 36 H 1.09008 * 110.47418 * 264.66203 * 20 19 17 37 37 H 1.08996 * 110.76212 * 80.98263 * 21 20 19 38 38 H 1.09000 * 110.76697 * 204.18953 * 21 20 19 39 39 H 1.09011 * 110.95451 * 277.27507 * 24 23 22 40 40 H 1.08995 * 110.99721 * 153.55284 * 24 23 22 41 41 H 1.09001 * 110.69092 * 206.42944 * 25 24 23 42 42 H 1.08998 * 110.83493 * 83.29837 * 25 24 23 43 43 H 1.08003 * 120.16080 * 179.72664 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0533 -1.2317 0.2710 9 6 1.3461 -2.4104 -0.3530 10 6 0.2109 -2.3741 -1.1848 11 6 -0.4284 -3.5447 -1.5243 12 6 0.0394 -4.7598 -1.0510 13 6 1.1605 -4.8111 -0.2265 14 7 1.6240 -6.0439 0.2463 15 6 2.9455 -6.2462 0.4178 16 8 3.7387 -5.3948 0.0757 17 6 3.4375 -7.5301 1.0345 18 1 3.1138 -8.3807 0.4347 19 6 2.9030 -7.6640 2.4728 20 6 4.1372 -7.7328 3.3965 21 6 5.2629 -7.0468 2.5814 22 6 4.9702 -7.5122 1.1399 23 8 5.5299 -6.5916 0.1986 24 6 6.7877 -7.1932 -0.1976 25 6 6.4355 -8.7024 -0.1863 26 8 5.5099 -8.8140 0.9164 27 6 1.8132 -3.6453 0.1300 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1577 -1.4292 -1.5559 30 1 -1.2994 -3.5159 -2.1621 31 1 -0.4692 -5.6731 -1.3224 32 1 0.9944 -6.7528 0.4506 33 1 2.2940 -6.7966 2.7272 34 1 2.3128 -8.5754 2.5685 35 1 3.9512 -7.1887 4.3225 36 1 4.3962 -8.7698 3.6102 37 1 5.1904 -5.9620 2.6595 38 1 6.2433 -7.3917 2.9102 39 1 7.5716 -6.9704 0.5264 40 1 7.0786 -6.8683 -1.1965 41 1 7.3258 -9.3043 -0.0043 42 1 5.9580 -8.9961 -1.1211 43 1 2.6801 -3.6837 0.7730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837073741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:11 Heat of formation + Delta-G solvation = -98.952461 kcal Electronic energy + Delta-G solvation = -27131.335809 eV Core-core repulsion = 23334.292094 eV Total energy + Delta-G solvation = -3797.043715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09733 -39.33627 -37.24587 -36.10390 -34.97329 -34.30929 -32.95125 -29.96759 -29.78280 -29.75048 -27.63271 -26.62686 -25.23983 -23.34920 -22.37755 -21.03714 -20.88944 -20.41032 -19.21242 -17.73327 -17.39046 -16.71232 -16.25689 -15.72770 -15.41851 -15.30440 -15.07162 -14.60814 -14.35005 -14.09315 -13.86524 -13.46276 -13.04669 -12.83826 -12.81615 -12.52892 -12.34139 -12.20170 -12.04451 -11.61974 -11.42079 -11.33525 -11.27204 -11.08941 -11.03530 -10.84688 -10.76581 -10.41190 -10.17132 -10.02436 -9.60167 -9.52940 -9.24988 -8.99293 -8.76545 -7.39280 -6.84232 -6.66090 -4.28649 2.69034 2.88409 3.12513 3.19565 3.22884 3.23902 3.47102 3.75064 3.98348 4.01390 4.33880 4.45276 4.52903 4.70212 4.81405 4.89503 5.01157 5.20545 5.24670 5.33303 5.39594 5.40805 5.55103 5.62353 5.72922 5.77134 5.79648 5.89500 5.92938 6.03605 6.21894 6.30126 6.45079 6.86726 7.08312 7.11020 7.13513 7.18341 7.31063 7.64611 7.79923 8.03553 8.15701 8.25740 8.35235 8.70219 8.85912 9.00415 9.04954 10.26321 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.003655 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.123890 B = 7658.548621 C = 8298.459529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.093 4.093 12 C -0.263 4.263 13 C 0.155 3.845 14 N -0.672 5.672 15 C 0.509 3.491 16 O -0.479 6.479 17 C -0.119 4.119 18 H 0.106 0.894 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.142 4.142 22 C 0.265 3.735 23 O -0.311 6.311 24 C 0.001 3.999 25 C 0.019 3.981 26 O -0.373 6.373 27 C -0.210 4.210 28 H 0.278 0.722 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.396 0.604 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.072 -15.628 3.412 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.192 4.192 11 C -0.112 4.112 12 C -0.284 4.284 13 C 0.064 3.936 14 N -0.317 5.317 15 C 0.294 3.706 16 O -0.350 6.350 17 C -0.141 4.141 18 H 0.124 0.876 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.180 4.180 22 C 0.187 3.813 23 O -0.230 6.230 24 C -0.075 4.075 25 C -0.057 4.057 26 O -0.294 6.294 27 C -0.231 4.231 28 H 0.089 0.911 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.229 0.771 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.344 -14.831 3.252 17.325 hybrid contribution 0.046 0.235 -0.020 0.240 sum 8.390 -14.596 3.232 17.143 Atomic orbital electron populations 1.69840 1.07516 1.28914 1.35948 1.25889 0.94711 1.01209 0.92286 0.86292 0.81144 0.81030 0.78447 1.18374 1.19743 1.20064 1.19608 0.97785 0.90940 1.40438 0.90378 1.17490 0.90848 0.91656 0.88302 1.21331 0.99412 0.96806 1.01678 1.20451 0.98505 0.92750 0.99485 1.20043 1.02580 0.96830 1.08964 1.17422 0.95963 0.83441 0.96805 1.43454 1.06946 1.15111 1.66173 1.20090 0.82548 0.88296 0.79648 1.90821 1.53592 1.44035 1.46592 1.22225 0.94756 0.98194 0.98919 0.87612 1.22150 0.98377 1.03139 0.91609 1.22259 0.94171 1.01002 0.98093 1.23020 0.99552 1.02083 0.93365 1.23385 0.90669 0.76668 0.90581 1.89838 1.31771 1.41286 1.60073 1.24466 0.89345 0.91365 1.02374 1.24257 0.93397 0.97320 0.90758 1.88801 1.59844 1.29001 1.51733 1.20965 1.04342 0.90954 1.06842 0.91074 0.86387 0.89152 0.89415 0.77094 0.90371 0.90417 0.90850 0.90958 0.88949 0.90591 0.91045 0.87614 0.88509 0.90712 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.04 10.94 55.55 0.61 -20.43 16 2 C 0.08 1.98 5.16 -17.35 -0.09 1.89 16 3 Si 0.91 19.39 29.59 -169.99 -5.03 14.36 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.46 -12.80 9.05 -37.74 -0.34 -13.15 16 8 H 0.08 2.17 7.90 -52.49 -0.41 1.75 16 9 C 0.12 3.37 5.57 -106.85 -0.59 2.77 16 10 C -0.17 -4.62 8.69 -38.84 -0.34 -4.96 16 11 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 12 C -0.26 -5.94 9.97 -39.10 -0.39 -6.33 16 13 C 0.16 3.61 6.25 -83.76 -0.52 3.08 16 14 N -0.67 -12.38 5.21 -9.91 -0.05 -12.44 16 15 C 0.51 9.46 6.56 -10.98 -0.07 9.39 16 16 O -0.48 -10.97 11.50 -19.44 -0.22 -11.20 16 17 C -0.12 -1.67 3.05 -90.90 -0.28 -1.94 16 18 H 0.11 1.32 8.07 -51.93 -0.42 0.90 16 19 C -0.11 -1.32 6.41 -25.51 -0.16 -1.48 16 20 C -0.12 -1.26 6.83 -24.99 -0.17 -1.43 16 21 C -0.14 -1.81 6.31 -25.01 -0.16 -1.97 16 22 C 0.27 3.76 1.04 -25.72 -0.03 3.73 16 23 O -0.31 -5.17 7.80 -67.91 -0.53 -5.70 16 24 C 0.00 0.02 7.96 38.20 0.30 0.32 16 25 C 0.02 0.19 8.08 38.20 0.31 0.50 16 26 O -0.37 -4.72 10.91 -59.03 -0.64 -5.36 16 27 C -0.21 -5.55 8.39 -38.68 -0.32 -5.87 16 28 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 29 H 0.12 3.24 6.17 -52.49 -0.32 2.91 16 30 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 32 H 0.40 5.74 8.82 -40.82 -0.36 5.38 16 33 H 0.08 0.98 7.62 -51.93 -0.40 0.59 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.11 2.87 6.48 -52.48 -0.34 2.53 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -32.62 349.35 -9.90 -42.52 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.04 Total: 11.05 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.25 Total: -18.07 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.56 Total: -32.87 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.40 Total: -22.26 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.62 -9.90 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837073741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.428 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds