Wall clock time and date at job start Tue Mar 31 2020 11:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99955 * 2 1 4 4 H 1.48502 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46881 * 299.99289 * 3 2 1 6 6 H 1.48492 * 109.47301 * 59.99511 * 3 2 1 7 7 C 1.39935 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99834 * 196.80418 * 7 2 1 9 9 C 1.41405 * 119.99701 * 16.80637 * 7 2 1 10 10 C 1.40773 * 120.21396 * 25.16402 * 9 7 2 11 11 C 1.37638 * 119.88882 * 180.02562 * 10 9 7 12 12 C 1.38530 * 120.32286 * 0.02562 * 11 10 9 13 13 C 1.39252 * 120.42733 * 0.02562 * 12 11 10 14 14 N 1.39936 * 119.94850 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99994 * 145.79260 * 14 13 12 16 16 O 1.21290 * 119.99785 * 354.89174 * 15 14 13 17 17 C 1.50699 * 120.00147 * 174.89306 * 15 14 13 18 18 H 1.08996 * 110.04258 * 59.29785 * 17 15 14 19 19 C 1.54018 * 110.05710 * 297.83726 * 17 15 14 20 20 C 1.54310 * 106.57523 * 240.29011 * 19 17 15 21 21 C 1.54992 * 104.26704 * 23.48965 * 20 19 17 22 22 C 1.53649 * 110.10583 * 180.79245 * 17 15 14 23 23 O 1.43061 * 110.65106 * 337.36405 * 22 17 15 24 24 C 1.44951 * 104.61190 * 213.72420 * 23 22 17 25 25 C 1.54973 * 101.82512 * 35.40126 * 24 23 22 26 26 O 1.42688 * 110.84943 * 215.50878 * 22 17 15 27 27 C 1.38282 * 120.10412 * 0.23444 * 13 12 11 28 28 H 0.97005 * 119.99964 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.05655 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.84122 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.78979 * 179.97438 * 12 11 10 32 32 H 0.96992 * 120.00382 * 325.79806 * 14 13 12 33 33 H 1.09000 * 110.03877 * 359.57018 * 19 17 15 34 34 H 1.08998 * 110.03389 * 120.96255 * 19 17 15 35 35 H 1.09000 * 110.47507 * 142.18577 * 20 19 17 36 36 H 1.09008 * 110.47418 * 264.66203 * 20 19 17 37 37 H 1.08996 * 110.76212 * 80.98263 * 21 20 19 38 38 H 1.09000 * 110.76697 * 204.18953 * 21 20 19 39 39 H 1.09011 * 110.95451 * 277.27507 * 24 23 22 40 40 H 1.08995 * 110.99721 * 153.55284 * 24 23 22 41 41 H 1.09001 * 110.69092 * 206.42944 * 25 24 23 42 42 H 1.08998 * 110.83493 * 83.29837 * 25 24 23 43 43 H 1.08003 * 120.16080 * 179.72664 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0533 -1.2317 0.2710 9 6 1.3461 -2.4104 -0.3530 10 6 0.2109 -2.3741 -1.1848 11 6 -0.4284 -3.5447 -1.5243 12 6 0.0394 -4.7598 -1.0510 13 6 1.1605 -4.8111 -0.2265 14 7 1.6240 -6.0439 0.2463 15 6 2.9455 -6.2462 0.4178 16 8 3.7387 -5.3948 0.0757 17 6 3.4375 -7.5301 1.0345 18 1 3.1138 -8.3807 0.4347 19 6 2.9030 -7.6640 2.4728 20 6 4.1372 -7.7328 3.3965 21 6 5.2629 -7.0468 2.5814 22 6 4.9702 -7.5122 1.1399 23 8 5.5299 -6.5916 0.1986 24 6 6.7877 -7.1932 -0.1976 25 6 6.4355 -8.7024 -0.1863 26 8 5.5099 -8.8140 0.9164 27 6 1.8132 -3.6453 0.1300 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1577 -1.4292 -1.5559 30 1 -1.2994 -3.5159 -2.1621 31 1 -0.4692 -5.6731 -1.3224 32 1 0.9944 -6.7528 0.4506 33 1 2.2940 -6.7966 2.7272 34 1 2.3128 -8.5754 2.5685 35 1 3.9512 -7.1887 4.3225 36 1 4.3962 -8.7698 3.6102 37 1 5.1904 -5.9620 2.6595 38 1 6.2433 -7.3917 2.9102 39 1 7.5716 -6.9704 0.5264 40 1 7.0786 -6.8683 -1.1965 41 1 7.3258 -9.3043 -0.0043 42 1 5.9580 -8.9961 -1.1211 43 1 2.6801 -3.6837 0.7730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837073741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:10 Heat of formation + Delta-G solvation = -118.973596 kcal Electronic energy + Delta-G solvation = -27132.203991 eV Core-core repulsion = 23334.292094 eV Total energy + Delta-G solvation = -3797.911897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.20097 -40.80477 -38.97987 -37.24356 -36.22005 -35.89656 -34.78602 -31.75260 -31.17451 -30.76792 -29.24595 -27.62159 -27.24784 -24.25734 -23.88711 -22.79968 -22.11070 -21.80484 -20.65398 -19.51892 -18.61592 -17.86757 -17.39029 -17.27597 -16.80894 -16.59977 -16.52703 -16.38220 -15.75879 -15.32498 -14.89524 -14.84108 -14.81427 -14.49463 -13.94833 -13.81195 -13.54839 -13.48264 -13.31859 -13.26071 -13.03080 -12.89859 -12.78020 -12.32076 -12.22846 -12.18939 -12.15284 -11.94399 -11.63857 -11.49830 -11.12307 -11.07065 -10.80653 -10.61597 -10.36796 -9.39376 -8.73869 -8.59789 -6.37425 0.88560 1.00477 1.35000 1.46199 1.50583 1.85980 2.05494 2.20719 2.61947 2.73160 2.91994 3.34588 3.47282 3.66776 3.73483 3.87926 4.02745 4.11396 4.19960 4.27732 4.39921 4.45843 4.47017 4.58053 4.62705 4.64011 4.71098 4.83472 4.89485 4.99451 5.05096 5.06564 5.10274 5.10842 5.13417 5.26584 5.32546 5.33975 5.78094 5.87705 6.07849 6.11637 6.20840 6.35364 6.67482 6.71331 6.93770 7.01448 7.41459 8.32997 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.003655 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.123890 B = 7658.548621 C = 8298.459529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.090 3.910 10 C -0.199 4.199 11 C -0.091 4.091 12 C -0.253 4.253 13 C 0.162 3.838 14 N -0.661 5.661 15 C 0.505 3.495 16 O -0.527 6.527 17 C -0.112 4.112 18 H 0.128 0.872 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.145 4.145 22 C 0.260 3.740 23 O -0.356 6.356 24 C -0.008 4.008 25 C 0.021 3.979 26 O -0.375 6.375 27 C -0.236 4.236 28 H 0.289 0.711 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.418 0.582 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.644 -18.012 3.592 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.185 1.185 7 C -0.532 4.532 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.219 4.219 11 C -0.110 4.110 12 C -0.274 4.274 13 C 0.069 3.931 14 N -0.308 5.308 15 C 0.293 3.707 16 O -0.401 6.401 17 C -0.134 4.134 18 H 0.146 0.854 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.183 4.183 22 C 0.182 3.818 23 O -0.276 6.276 24 C -0.085 4.085 25 C -0.055 4.055 26 O -0.296 6.296 27 C -0.258 4.258 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.256 0.744 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.098 0.902 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.891 -17.275 3.444 19.302 hybrid contribution 0.202 0.836 -0.116 0.868 sum 8.093 -16.438 3.328 18.622 Atomic orbital electron populations 1.69861 1.08690 1.30478 1.35745 1.26672 0.95580 1.04132 0.91160 0.85204 0.79037 0.76307 0.79395 1.19103 1.18206 1.18487 1.19739 0.97392 0.92776 1.43338 0.92199 1.17824 0.91900 0.92357 0.89182 1.21290 1.00077 0.97563 1.02923 1.20830 0.98881 0.92196 0.99065 1.20477 1.01764 0.98022 1.07156 1.17514 0.95418 0.84320 0.95842 1.43376 1.07732 1.14034 1.65683 1.20987 0.81896 0.89381 0.78467 1.90814 1.54803 1.46181 1.48345 1.22266 0.95061 0.95673 1.00406 0.85382 1.22214 0.98820 1.04153 0.89770 1.22288 0.92777 1.02037 0.97798 1.22995 1.01367 1.00412 0.93492 1.23481 0.90631 0.77057 0.90678 1.89804 1.33857 1.43042 1.60910 1.24720 0.88165 0.92508 1.03059 1.24446 0.94189 0.96436 0.90410 1.88770 1.60314 1.27881 1.52595 1.20904 1.04590 0.92280 1.08013 0.89993 0.87791 0.85921 0.85151 0.74441 0.91931 0.86882 0.90048 0.88825 0.92052 0.89183 0.89919 0.86990 0.85146 0.90198 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.59 10.94 21.82 0.24 -44.36 16 2 C 0.04 2.12 5.16 85.25 0.44 2.56 16 3 Si 0.98 40.90 29.59 68.60 2.03 42.93 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 7 C -0.50 -29.97 9.05 23.46 0.21 -29.76 16 8 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 9 C 0.09 5.33 5.57 -21.31 -0.12 5.21 16 10 C -0.20 -10.96 8.69 22.75 0.20 -10.77 16 11 C -0.09 -4.27 10.02 22.20 0.22 -4.05 16 12 C -0.25 -10.96 9.97 22.58 0.23 -10.73 16 13 C 0.16 7.55 6.25 38.10 0.24 7.79 16 14 N -0.66 -23.81 5.21 -303.64 -1.58 -25.39 16 15 C 0.51 18.88 6.56 87.66 0.58 19.45 16 16 O -0.53 -25.36 11.50 20.83 0.24 -25.12 16 17 C -0.11 -2.98 3.05 -10.98 -0.03 -3.01 16 18 H 0.13 2.80 8.07 -2.39 -0.02 2.78 16 19 C -0.11 -2.30 6.41 31.38 0.20 -2.10 16 20 C -0.11 -2.15 6.83 31.72 0.22 -1.93 16 21 C -0.14 -3.63 6.31 31.71 0.20 -3.43 16 22 C 0.26 7.15 1.04 31.25 0.03 7.18 16 23 O -0.36 -12.13 7.80 -117.74 -0.92 -13.05 16 24 C -0.01 -0.19 7.96 72.66 0.58 0.39 16 25 C 0.02 0.37 8.08 72.66 0.59 0.96 16 26 O -0.37 -8.58 10.91 -126.23 -1.38 -9.95 16 27 C -0.24 -13.17 8.39 22.85 0.19 -12.98 16 28 H 0.29 14.00 8.30 -92.70 -0.77 13.23 16 29 H 0.10 5.93 6.17 -2.91 -0.02 5.91 16 30 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.42 11.08 8.82 -92.71 -0.82 10.26 16 33 H 0.06 1.50 7.62 -2.39 -0.02 1.48 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 4.81 6.48 -2.91 -0.02 4.79 16 Total: -1.00 -76.25 349.35 2.81 -73.43 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.21 Total: 36.72 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 3.97 Total: -35.21 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.34 Total: -69.75 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -2.06 Total: -48.13 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -76.25 2.81 -73.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837073741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.539 kcal (2) G-P(sol) polarization free energy of solvation -76.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds