Wall clock time and date at job start Tue Mar 31 2020 11:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38269 * 119.72789 * 2 1 4 4 C 1.37925 * 120.10285 * 180.02562 * 3 2 1 5 5 C 1.39544 * 119.75931 * 359.94710 * 4 3 2 6 6 C 1.47726 * 120.04711 * 180.02562 * 5 4 3 7 7 O 1.21472 * 120.00104 * 179.97438 * 6 5 4 8 8 O 1.34709 * 119.99735 * 0.02562 * 6 5 4 9 9 C 1.45204 * 116.99952 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47291 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99693 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99857 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99674 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47126 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00073 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00238 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99828 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00337 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47031 * 59.99896 * 18 16 14 20 20 H 1.48494 * 109.47236 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46837 * 300.00154 * 18 16 14 22 22 C 1.39829 * 119.90707 * 0.04882 * 5 4 3 23 23 C 1.37961 * 119.75980 * 359.97438 * 22 5 4 24 24 C 1.51398 * 109.76462 * 179.97438 * 23 22 5 25 25 C 1.54342 * 105.16656 * 17.18067 * 24 23 22 26 26 C 1.51356 * 130.41227 * 179.97438 * 22 5 4 27 27 H 1.09003 * 109.46684 * 270.02041 * 1 2 3 28 28 H 1.08996 * 109.47741 * 30.02234 * 1 2 3 29 29 H 1.09004 * 109.47030 * 150.02700 * 1 2 3 30 30 H 1.07997 * 119.95334 * 359.97407 * 3 2 1 31 31 H 1.07991 * 120.12111 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47253 * 300.00447 * 9 8 6 33 33 H 1.09009 * 109.46880 * 60.00329 * 9 8 6 34 34 H 0.96997 * 120.00157 * 359.97438 * 12 10 9 35 35 H 1.08999 * 109.47556 * 300.00232 * 13 12 10 36 36 H 1.09009 * 109.46854 * 60.00283 * 13 12 10 37 37 H 0.96999 * 119.99924 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.30169 * 136.10869 * 24 23 22 39 39 H 1.09002 * 110.30163 * 258.26040 * 24 23 22 40 40 H 1.09002 * 110.82947 * 215.46974 * 25 24 23 41 41 H 1.09009 * 110.82740 * 91.90295 * 25 24 23 42 42 H 1.08997 * 110.30685 * 281.75660 * 26 22 5 43 43 H 1.09003 * 110.30476 * 43.91102 * 26 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.2007 0.0000 4 6 3.5718 1.2097 -0.0005 5 6 4.2724 0.0029 0.0000 6 6 5.7497 0.0051 0.0001 7 8 6.3586 -1.0459 0.0010 8 8 6.4214 1.1728 0.0000 9 6 7.8715 1.0991 0.0006 10 6 8.4454 2.4926 -0.0002 11 8 7.7051 3.4532 -0.0006 12 7 9.7813 2.6712 -0.0003 13 6 10.3391 4.0258 -0.0016 14 6 11.8441 3.9493 -0.0022 15 1 12.3359 2.9878 -0.0020 16 6 12.5933 5.1068 -0.0029 17 7 11.9944 6.2777 -0.0025 18 14 14.4589 5.0119 -0.0042 19 1 14.9168 4.2875 -1.2170 20 1 15.0243 6.3850 -0.0055 21 1 14.9186 4.2878 1.2080 22 6 3.5741 -1.2086 0.0001 23 6 2.1945 -1.2038 0.0002 24 6 1.6776 -2.6268 -0.0004 25 6 2.8774 -3.4924 0.4393 26 6 4.0826 -2.6342 0.0002 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6474 2.1330 -0.0004 31 1 4.1076 2.1474 -0.0010 32 1 8.2080 0.5676 0.8908 33 1 8.2086 0.5672 -0.8892 34 1 10.3733 1.9028 0.0004 35 1 10.0024 4.5566 -0.8921 36 1 10.0023 4.5583 0.8880 37 1 12.5215 7.0920 -0.0034 38 1 0.8561 -2.7310 0.7084 39 1 1.3530 -2.9108 -1.0014 40 1 2.8745 -4.4510 -0.0795 41 1 2.8770 -3.6353 1.5200 42 1 4.4058 -2.9205 -1.0006 43 1 4.9033 -2.7430 0.7092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838102801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:32 Heat of formation + Delta-G solvation = -112.293380 kcal Electronic energy + Delta-G solvation = -25143.259608 eV Core-core repulsion = 21345.637387 eV Total energy + Delta-G solvation = -3797.622221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01437 -39.90257 -38.62039 -36.37743 -36.02482 -34.24713 -33.47018 -32.40949 -29.44190 -29.35875 -28.30656 -27.51726 -26.38836 -23.24809 -22.53712 -21.78888 -21.33824 -20.14303 -19.90842 -17.77827 -17.46642 -16.63985 -16.58638 -16.05080 -15.76220 -15.47838 -15.07580 -15.06621 -14.58803 -14.45547 -14.00746 -13.92780 -13.56370 -13.22347 -13.01407 -12.90174 -12.66644 -12.45168 -12.36569 -12.02718 -11.98886 -11.75602 -11.66150 -11.45806 -11.34994 -11.15815 -11.03483 -10.90582 -10.67101 -10.44623 -10.34795 -9.45847 -9.17730 -8.96772 -8.82217 -8.78014 -7.98976 -6.19621 -4.27146 0.48620 1.07709 2.40439 2.43116 3.17975 3.24252 3.29105 3.30589 3.47980 3.95553 4.07087 4.21994 4.32985 4.55478 4.64182 4.70694 4.75787 4.78795 4.91849 5.07925 5.16344 5.21334 5.23400 5.25310 5.34760 5.36245 5.41623 5.43279 5.49210 5.57887 5.64674 5.80334 5.84362 5.89164 6.03589 6.14268 6.24664 6.38056 6.60734 7.22343 7.30685 7.45608 7.59179 7.71257 7.91879 8.49845 8.70823 8.96205 9.39144 10.90450 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.002141 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.372575 B =13073.578857 C =13935.883079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.039 4.039 3 C -0.136 4.136 4 C -0.053 4.053 5 C -0.120 4.120 6 C 0.507 3.493 7 O -0.507 6.507 8 O -0.325 6.325 9 C 0.050 3.950 10 C 0.500 3.500 11 O -0.534 6.534 12 N -0.707 5.707 13 C 0.251 3.749 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.025 4.025 23 C -0.117 4.117 24 C -0.077 4.077 25 C -0.123 4.123 26 C -0.084 4.084 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.147 0.853 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.393 0.607 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.532 -18.449 0.133 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.039 4.039 3 C -0.154 4.154 4 C -0.071 4.071 5 C -0.121 4.121 6 C 0.352 3.648 7 O -0.397 6.397 8 O -0.240 6.240 9 C -0.028 4.028 10 C 0.283 3.717 11 O -0.412 6.412 12 N -0.357 5.357 13 C 0.131 3.869 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.025 4.025 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.160 4.160 26 C -0.120 4.120 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.165 0.835 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.226 0.774 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.799 -17.802 0.132 28.926 hybrid contribution 1.587 -0.240 -0.027 1.605 sum -21.212 -18.042 0.105 27.848 Atomic orbital electron populations 1.20865 0.90887 1.03131 1.02688 1.19748 0.96258 0.91832 0.96086 1.20969 0.93862 0.97643 1.02961 1.21547 0.94348 0.97709 0.93475 1.18663 0.88744 0.93758 1.10900 1.21275 0.88872 0.81761 0.72887 1.90799 1.70050 1.32656 1.46234 1.86599 1.20727 1.33092 1.83612 1.22869 0.77422 0.97851 1.04611 1.19881 0.83769 0.89321 0.78732 1.90701 1.58970 1.41915 1.49590 1.46362 1.04548 1.12320 1.72447 1.19170 0.92980 0.76692 0.98020 1.21171 0.90396 0.93221 1.53627 0.91812 1.24956 0.99396 0.95041 0.94610 1.69964 1.36116 0.97519 1.48591 0.86442 0.84260 0.77292 0.78725 1.20034 1.21048 1.20028 1.20565 0.93746 0.94117 0.94119 1.20365 0.93295 0.94950 1.03111 1.21018 0.98466 0.89860 1.02075 1.22354 0.93765 0.98245 1.01641 1.21165 0.98521 0.89101 1.03250 0.90674 0.91086 0.91268 0.84812 0.83546 0.88469 0.88476 0.77419 0.95260 0.95253 0.92314 0.90592 0.90137 0.90298 0.90825 0.89573 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.86 36.00 0.35 -0.33 16 2 C -0.04 -0.35 5.89 -104.47 -0.62 -0.96 16 3 C -0.14 -1.31 9.67 -39.68 -0.38 -1.69 16 4 C -0.05 -0.63 9.61 -39.21 -0.38 -1.00 16 5 C -0.12 -1.57 5.88 -104.94 -0.62 -2.19 16 6 C 0.51 7.65 7.90 34.61 0.27 7.93 16 7 O -0.51 -8.03 14.49 -19.24 -0.28 -8.31 16 8 O -0.33 -5.40 9.00 -47.19 -0.42 -5.82 16 9 C 0.05 0.78 5.95 36.01 0.21 1.00 16 10 C 0.50 10.12 7.91 -10.98 -0.09 10.04 16 11 O -0.53 -13.09 16.50 -14.10 -0.23 -13.32 16 12 N -0.71 -14.71 5.55 -61.47 -0.34 -15.05 16 13 C 0.25 6.60 5.43 -5.20 -0.03 6.57 16 14 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 18 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.03 -0.29 6.03 -103.81 -0.63 -0.91 16 23 C -0.12 -1.11 6.00 -104.24 -0.63 -1.74 16 24 C -0.08 -0.52 6.09 -26.84 -0.16 -0.69 16 25 C -0.12 -0.85 7.08 -25.33 -0.18 -1.03 16 26 C -0.08 -0.82 5.58 -26.87 -0.15 -0.97 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.07 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.15 1.79 7.60 -52.49 -0.40 1.39 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.10 1.33 8.14 -51.92 -0.42 0.90 16 34 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.99 7.19 -51.93 -0.37 0.62 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -33.45 367.52 -9.56 -43.01 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.11 Total: 2.69 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.43 Total: 0.71 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.40 Total: -40.20 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.94 Total: -27.45 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.45 -9.56 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838102801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.281 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds