Wall clock time and date at job start Tue Mar 31 2020 11:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38269 * 119.72789 * 2 1 4 4 C 1.37925 * 120.10285 * 180.02562 * 3 2 1 5 5 C 1.39544 * 119.75931 * 359.94710 * 4 3 2 6 6 C 1.47726 * 120.04711 * 180.02562 * 5 4 3 7 7 O 1.21472 * 120.00104 * 179.97438 * 6 5 4 8 8 O 1.34709 * 119.99735 * 0.02562 * 6 5 4 9 9 C 1.45204 * 116.99952 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47291 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99693 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99857 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99674 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47126 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00073 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00238 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99828 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00337 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47031 * 59.99896 * 18 16 14 20 20 H 1.48494 * 109.47236 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46837 * 300.00154 * 18 16 14 22 22 C 1.39829 * 119.90707 * 0.04882 * 5 4 3 23 23 C 1.37961 * 119.75980 * 359.97438 * 22 5 4 24 24 C 1.51398 * 109.76462 * 179.97438 * 23 22 5 25 25 C 1.54342 * 105.16656 * 17.18067 * 24 23 22 26 26 C 1.51356 * 130.41227 * 179.97438 * 22 5 4 27 27 H 1.09003 * 109.46684 * 270.02041 * 1 2 3 28 28 H 1.08996 * 109.47741 * 30.02234 * 1 2 3 29 29 H 1.09004 * 109.47030 * 150.02700 * 1 2 3 30 30 H 1.07997 * 119.95334 * 359.97407 * 3 2 1 31 31 H 1.07991 * 120.12111 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47253 * 300.00447 * 9 8 6 33 33 H 1.09009 * 109.46880 * 60.00329 * 9 8 6 34 34 H 0.96997 * 120.00157 * 359.97438 * 12 10 9 35 35 H 1.08999 * 109.47556 * 300.00232 * 13 12 10 36 36 H 1.09009 * 109.46854 * 60.00283 * 13 12 10 37 37 H 0.96999 * 119.99924 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.30169 * 136.10869 * 24 23 22 39 39 H 1.09002 * 110.30163 * 258.26040 * 24 23 22 40 40 H 1.09002 * 110.82947 * 215.46974 * 25 24 23 41 41 H 1.09009 * 110.82740 * 91.90295 * 25 24 23 42 42 H 1.08997 * 110.30685 * 281.75660 * 26 22 5 43 43 H 1.09003 * 110.30476 * 43.91102 * 26 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.2007 0.0000 4 6 3.5718 1.2097 -0.0005 5 6 4.2724 0.0029 0.0000 6 6 5.7497 0.0051 0.0001 7 8 6.3586 -1.0459 0.0010 8 8 6.4214 1.1728 0.0000 9 6 7.8715 1.0991 0.0006 10 6 8.4454 2.4926 -0.0002 11 8 7.7051 3.4532 -0.0006 12 7 9.7813 2.6712 -0.0003 13 6 10.3391 4.0258 -0.0016 14 6 11.8441 3.9493 -0.0022 15 1 12.3359 2.9878 -0.0020 16 6 12.5933 5.1068 -0.0029 17 7 11.9944 6.2777 -0.0025 18 14 14.4589 5.0119 -0.0042 19 1 14.9168 4.2875 -1.2170 20 1 15.0243 6.3850 -0.0055 21 1 14.9186 4.2878 1.2080 22 6 3.5741 -1.2086 0.0001 23 6 2.1945 -1.2038 0.0002 24 6 1.6776 -2.6268 -0.0004 25 6 2.8774 -3.4924 0.4393 26 6 4.0826 -2.6342 0.0002 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6474 2.1330 -0.0004 31 1 4.1076 2.1474 -0.0010 32 1 8.2080 0.5676 0.8908 33 1 8.2086 0.5672 -0.8892 34 1 10.3733 1.9028 0.0004 35 1 10.0024 4.5566 -0.8921 36 1 10.0023 4.5583 0.8880 37 1 12.5215 7.0920 -0.0034 38 1 0.8561 -2.7310 0.7084 39 1 1.3530 -2.9108 -1.0014 40 1 2.8745 -4.4510 -0.0795 41 1 2.8770 -3.6353 1.5200 42 1 4.4058 -2.9205 -1.0006 43 1 4.9033 -2.7430 0.7092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838102801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:31 Heat of formation + Delta-G solvation = -131.771942 kcal Electronic energy + Delta-G solvation = -25144.104262 eV Core-core repulsion = 21345.637387 eV Total energy + Delta-G solvation = -3798.466875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.01870 -41.00029 -40.21946 -37.57992 -36.78119 -36.20660 -34.44381 -34.21549 -30.93835 -30.12471 -28.97505 -28.83759 -27.70963 -24.76428 -23.86152 -22.59910 -22.16836 -21.67423 -21.00103 -19.27828 -18.71821 -18.07311 -17.86784 -17.24391 -17.07969 -16.71327 -16.47748 -16.16676 -15.97596 -15.81050 -15.06810 -14.63323 -14.59817 -14.45116 -14.22175 -14.07625 -13.81765 -13.76729 -13.57792 -13.12473 -12.99789 -12.97282 -12.70376 -12.69095 -12.42780 -12.25404 -12.15496 -11.98759 -11.95887 -11.75576 -11.54669 -11.50262 -10.94654 -10.82080 -9.96127 -9.75931 -9.57677 -8.30659 -6.47575 -0.41309 0.28554 1.18329 1.36963 1.43650 1.47042 1.51616 1.55575 2.32384 2.53737 2.62845 3.04295 3.34208 3.55094 3.56602 3.70764 3.89111 3.98705 4.00878 4.07994 4.12286 4.17787 4.28967 4.44512 4.72476 4.77064 4.83699 4.85723 4.89356 4.98018 5.03405 5.06954 5.10494 5.15817 5.19671 5.23639 5.27592 5.33131 5.39143 5.43906 5.53376 5.60862 5.80236 5.87081 6.51170 6.60788 6.75071 7.18100 7.32731 8.81233 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.002141 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.372575 B =13073.578857 C =13935.883079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.035 4.035 3 C -0.138 4.138 4 C -0.069 4.069 5 C -0.148 4.148 6 C 0.507 3.493 7 O -0.520 6.520 8 O -0.345 6.345 9 C 0.061 3.939 10 C 0.501 3.499 11 O -0.582 6.582 12 N -0.698 5.698 13 C 0.267 3.733 14 C -0.558 4.558 15 H 0.086 0.914 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.986 3.014 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.042 4.042 23 C -0.118 4.118 24 C -0.074 4.074 25 C -0.116 4.116 26 C -0.086 4.086 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.413 0.587 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.269 0.731 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.507 -21.133 0.118 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.156 4.156 4 C -0.087 4.087 5 C -0.149 4.149 6 C 0.353 3.647 7 O -0.411 6.411 8 O -0.260 6.260 9 C -0.016 4.016 10 C 0.286 3.714 11 O -0.463 6.463 12 N -0.349 5.349 13 C 0.145 3.855 14 C -0.596 4.596 15 H 0.104 0.896 16 C -0.196 4.196 17 N -0.568 5.568 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.043 4.043 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.153 4.153 26 C -0.123 4.123 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.173 0.827 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.249 0.751 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.775 -20.547 0.117 31.423 hybrid contribution 1.756 0.598 -0.023 1.855 sum -22.019 -19.949 0.094 29.712 Atomic orbital electron populations 1.20954 0.88167 1.04440 1.03837 1.20166 0.98174 0.91147 0.93988 1.21254 0.92924 0.99232 1.02181 1.21529 0.95554 0.96828 0.94812 1.18771 0.87576 0.95094 1.13474 1.21674 0.89647 0.81020 0.72314 1.90774 1.70419 1.32684 1.47185 1.86598 1.20988 1.34387 1.84063 1.22759 0.77452 0.94269 1.07117 1.20629 0.83053 0.90870 0.76818 1.90678 1.60010 1.44135 1.51456 1.46037 1.05381 1.11040 1.72486 1.18634 0.93529 0.78778 0.94601 1.21576 0.90445 0.94357 1.53240 0.89594 1.26071 1.05249 0.94469 0.93803 1.70128 1.38443 0.98513 1.49710 0.85186 0.77041 0.77366 0.79501 1.18669 1.21112 1.18656 1.20874 0.94932 0.94147 0.94313 1.20808 0.92489 0.96722 1.01829 1.21111 0.98751 0.87599 1.03558 1.22374 0.92205 0.98591 1.02126 1.21211 0.99389 0.89025 1.02674 0.89373 0.90048 0.89788 0.82715 0.85073 0.85826 0.85829 0.75097 0.98953 0.98950 0.92173 0.88497 0.88591 0.88278 0.90454 0.89871 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.86 71.23 0.70 -0.25 16 2 C -0.03 -0.54 5.89 -19.76 -0.12 -0.66 16 3 C -0.14 -2.55 9.67 22.20 0.21 -2.34 16 4 C -0.07 -1.71 9.61 22.51 0.22 -1.49 16 5 C -0.15 -4.02 5.88 -20.07 -0.12 -4.14 16 6 C 0.51 15.77 7.90 70.33 0.56 16.33 16 7 O -0.52 -16.63 14.49 19.93 0.29 -16.34 16 8 O -0.34 -11.81 9.00 -49.80 -0.45 -12.26 16 9 C 0.06 1.89 5.95 71.24 0.42 2.32 16 10 C 0.50 20.83 7.91 87.66 0.69 21.52 16 11 O -0.58 -30.05 16.50 15.78 0.26 -29.79 16 12 N -0.70 -29.57 5.55 -466.79 -2.59 -32.15 16 13 C 0.27 14.62 5.43 85.63 0.46 15.08 16 14 C -0.56 -30.19 9.28 25.60 0.24 -29.95 16 15 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 18 Si 0.99 42.17 29.54 68.60 2.03 44.20 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 22 C -0.04 -0.96 6.03 -19.34 -0.12 -1.07 16 23 C -0.12 -2.02 6.00 -19.61 -0.12 -2.14 16 24 C -0.07 -0.76 6.09 30.53 0.19 -0.57 16 25 C -0.12 -1.32 7.08 31.50 0.22 -1.10 16 26 C -0.09 -1.64 5.58 30.51 0.17 -1.47 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 29 H 0.08 0.47 7.66 -2.38 -0.02 0.46 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.13 3.53 7.60 -2.92 -0.02 3.51 16 32 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.12 3.23 8.14 -2.38 -0.02 3.21 16 34 H 0.41 14.10 8.32 -92.71 -0.77 13.33 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 37 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.60 7.19 -2.39 -0.02 1.58 16 Total: -1.00 -76.20 367.52 4.17 -72.04 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.26 Total: 19.18 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 4.08 Total: 10.75 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -2.30 Total: -87.78 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: 0.10 Total: -58.39 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -76.20 4.17 -72.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838102801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.735 kcal (2) G-P(sol) polarization free energy of solvation -76.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds