Wall clock time and date at job start Tue Mar 31 2020 10:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47435 * 300.00163 * 3 2 1 6 6 H 1.48498 * 109.46876 * 60.00325 * 3 2 1 7 7 C 1.38695 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00195 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.35518 * 117.00082 * 174.26884 * 9 7 2 11 11 C 1.38840 * 120.16275 * 353.61184 * 10 9 7 12 12 C 1.38018 * 120.07372 * 180.23235 * 11 10 9 13 13 C 1.38580 * 120.40190 * 359.48853 * 12 11 10 14 14 C 1.37829 * 120.32030 * 0.51521 * 13 12 11 15 15 C 1.39664 * 119.92093 * 359.74290 * 14 13 12 16 16 C 1.47533 * 120.19528 * 180.02562 * 15 14 13 17 17 O 1.21598 * 119.99795 * 228.65974 * 16 15 14 18 18 N 1.34766 * 120.00497 * 48.65898 * 16 15 14 19 19 C 1.46801 * 119.53460 * 5.61930 * 18 16 15 20 20 C 1.53891 * 107.35094 * 127.90551 * 19 18 16 21 21 C 1.52739 * 108.32767 * 58.42303 * 20 19 18 22 22 C 1.52930 * 110.86638 * 296.09248 * 21 20 19 23 23 H 1.08998 * 112.99157 * 288.11643 * 22 21 20 24 24 C 1.55606 * 106.87609 * 163.46532 * 22 21 20 25 25 O 1.43756 * 104.98144 * 281.84182 * 24 22 21 26 26 C 1.43522 * 109.84600 * 335.10863 * 25 24 22 27 27 C 1.45037 * 119.54112 * 185.89393 * 18 16 15 28 28 H 1.09004 * 109.72720 * 347.25304 * 27 18 16 29 29 H 0.97002 * 119.99790 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.96187 * 359.96007 * 11 10 9 31 31 H 1.08004 * 119.80046 * 179.74602 * 12 11 10 32 32 H 1.08000 * 119.84019 * 180.25469 * 13 12 11 33 33 H 1.08006 * 120.03399 * 179.72093 * 14 13 12 34 34 H 1.09001 * 109.84108 * 247.47776 * 19 18 16 35 35 H 1.08998 * 109.83450 * 8.44057 * 19 18 16 36 36 H 1.09000 * 109.81614 * 298.66305 * 20 19 18 37 37 H 1.09002 * 109.62076 * 178.06590 * 20 19 18 38 38 H 1.09003 * 109.19769 * 175.74019 * 21 20 19 39 39 H 1.08993 * 109.20264 * 56.45243 * 21 20 19 40 40 H 1.08995 * 110.33906 * 40.71972 * 24 22 21 41 41 H 1.09006 * 110.33811 * 162.96566 * 24 22 21 42 42 H 1.08997 * 109.91140 * 242.36978 * 26 25 24 43 43 H 1.09000 * 109.90644 * 121.10836 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0086 -1.2012 -0.0005 8 1 3.0886 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0005 10 6 2.0673 -3.5022 -0.1217 11 6 3.4310 -3.4280 -0.3712 12 6 4.1746 -4.5837 -0.4990 13 6 3.5707 -5.8242 -0.3692 14 6 2.2180 -5.9170 -0.1216 15 6 1.4517 -4.7563 0.0049 16 6 0.0034 -4.8486 0.2706 17 8 -0.7797 -4.2015 -0.3976 18 7 -0.4516 -5.6500 1.2539 19 6 0.5060 -6.3303 2.1344 20 6 0.0969 -6.0191 3.5849 21 6 -1.3349 -6.5074 3.7954 22 6 -2.3098 -5.7369 2.9040 23 1 -2.4633 -4.7083 3.2305 24 6 -3.6300 -6.5595 2.8618 25 8 -3.3717 -7.6295 1.9372 26 6 -2.3379 -7.2422 1.0201 27 6 -1.8804 -5.8330 1.4237 28 1 -2.4189 -5.0901 0.8352 29 1 -0.4850 0.8401 0.0004 30 1 3.9097 -2.4649 -0.4698 31 1 5.2345 -4.5208 -0.6972 32 1 4.1620 -6.7226 -0.4669 33 1 1.7513 -6.8863 -0.0257 34 1 0.4699 -7.4056 1.9595 35 1 1.5124 -5.9575 1.9445 36 1 0.1478 -4.9446 3.7608 37 1 0.7659 -6.5363 4.2728 38 1 -1.6131 -6.3628 4.8394 39 1 -1.3909 -7.5688 3.5541 40 1 -3.8590 -6.9592 3.8496 41 1 -4.4516 -5.9392 2.5034 42 1 -2.7300 -7.2281 0.0032 43 1 -1.5015 -7.9377 1.0885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839452747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:49 Heat of formation + Delta-G solvation = -71.632778 kcal Electronic energy + Delta-G solvation = -27563.380521 eV Core-core repulsion = 23767.521476 eV Total energy + Delta-G solvation = -3795.859045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84523 -39.39226 -37.99051 -36.43746 -36.00409 -32.93584 -32.40211 -31.54214 -30.33594 -29.05120 -28.39449 -25.54523 -25.46914 -23.53743 -22.54671 -22.04893 -21.48704 -20.37465 -18.67052 -18.10304 -17.30069 -16.63450 -16.40365 -15.99104 -15.37268 -15.00048 -14.89522 -14.57671 -14.28195 -14.07392 -13.95168 -13.72000 -13.52996 -13.16495 -13.04615 -12.88634 -12.57869 -12.44292 -12.11051 -11.78004 -11.56261 -11.48282 -11.38990 -11.13377 -11.01498 -10.90463 -10.76808 -10.62614 -10.47450 -10.36200 -9.68287 -9.51941 -9.08197 -8.93700 -8.32624 -8.23933 -7.38795 -6.51352 -4.11956 1.74021 2.24068 3.07871 3.09055 3.14880 3.20838 3.43320 3.88629 3.88735 4.39282 4.47379 4.67883 4.83594 4.89637 5.00307 5.02199 5.08773 5.14309 5.19188 5.31182 5.44276 5.48474 5.52870 5.62577 5.63313 5.68104 5.71263 5.83129 5.90728 5.93681 5.98652 6.01946 6.11059 6.17982 6.34552 6.50812 6.59349 6.81609 6.89069 6.98184 7.00818 7.19559 7.23016 7.62343 7.77177 7.90118 8.82479 8.90616 9.58820 10.63884 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.004591 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.610206 B = 6098.007117 C = 7273.214299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.400 4.400 8 H 0.095 0.905 9 O -0.146 6.146 10 C 0.188 3.812 11 C -0.233 4.233 12 C -0.054 4.054 13 C -0.224 4.224 14 C -0.041 4.041 15 C -0.219 4.219 16 C 0.574 3.426 17 O -0.513 6.513 18 N -0.603 5.603 19 C 0.105 3.895 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.132 4.132 23 H 0.103 0.897 24 C 0.054 3.946 25 O -0.382 6.382 26 C 0.043 3.957 27 C 0.117 3.883 28 H 0.110 0.890 29 H 0.271 0.729 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -12.679 6.978 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.112 0.888 9 O -0.046 6.046 10 C 0.130 3.870 11 C -0.253 4.253 12 C -0.072 4.072 13 C -0.243 4.243 14 C -0.060 4.060 15 C -0.224 4.224 16 C 0.364 3.636 17 O -0.387 6.387 18 N -0.338 5.338 19 C -0.018 4.018 20 C -0.174 4.174 21 C -0.148 4.148 22 C -0.151 4.151 23 H 0.121 0.879 24 C -0.023 4.023 25 O -0.301 6.301 26 C -0.035 4.035 27 C 0.012 3.988 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.081 -12.263 6.620 13.936 hybrid contribution 0.677 1.022 -0.031 1.226 sum 0.596 -11.241 6.589 13.043 Atomic orbital electron populations 1.70097 1.06028 1.27774 1.43510 1.25377 0.95825 0.98991 0.96140 0.85641 0.79175 0.80187 0.78389 1.18941 1.19975 1.20023 1.21465 0.91859 0.80771 1.53497 0.88778 1.84049 1.34065 1.11354 1.75156 1.19205 0.90060 0.87004 0.90712 1.21151 0.93898 0.99352 1.10863 1.20903 0.98616 0.92257 0.95448 1.20485 0.94586 0.96991 1.12286 1.20746 0.93531 0.95632 0.96110 1.18661 0.92725 0.92049 1.18944 1.18341 0.88522 0.77565 0.79123 1.90807 1.57552 1.41929 1.48413 1.47281 1.04706 1.48596 1.33190 1.22057 0.94194 0.96524 0.89007 1.21981 0.96361 1.02511 0.96566 1.21452 0.94479 0.99829 0.99041 1.23111 0.95616 1.00832 0.95553 0.87869 1.23550 0.96260 0.88803 0.93704 1.88463 1.56856 1.39049 1.45704 1.23359 0.90808 0.95841 0.93495 1.21699 0.83284 0.97631 0.96226 0.87191 0.91844 0.85023 0.87101 0.87104 0.86690 0.91892 0.88114 0.90925 0.90722 0.91680 0.91334 0.89494 0.91965 0.90871 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.01 13.67 55.48 0.76 -24.25 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.10 16 3 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.40 -11.09 9.43 30.90 0.29 -10.80 16 8 H 0.09 2.37 5.32 -52.49 -0.28 2.09 16 9 O -0.15 -4.22 8.80 -8.68 -0.08 -4.30 16 10 C 0.19 4.54 6.63 -38.60 -0.26 4.29 16 11 C -0.23 -4.87 9.12 -39.44 -0.36 -5.23 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 13 C -0.22 -3.53 10.03 -39.61 -0.40 -3.93 16 14 C -0.04 -0.70 7.54 -39.20 -0.30 -0.99 16 15 C -0.22 -4.64 4.77 -104.81 -0.50 -5.14 16 16 C 0.57 12.52 6.91 -12.48 -0.09 12.43 16 17 O -0.51 -13.58 15.84 -4.21 -0.07 -13.65 16 18 N -0.60 -10.16 2.71 -166.42 -0.45 -10.61 16 19 C 0.10 1.40 4.96 -3.41 -0.02 1.38 16 20 C -0.14 -1.60 6.12 -26.40 -0.16 -1.77 16 21 C -0.11 -1.20 4.82 -26.90 -0.13 -1.33 16 22 C -0.13 -1.67 3.79 -88.52 -0.34 -2.00 16 23 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 24 C 0.05 0.61 7.04 38.54 0.27 0.88 16 25 O -0.38 -5.14 11.05 -35.23 -0.39 -5.53 16 26 C 0.04 0.58 7.02 37.45 0.26 0.85 16 27 C 0.12 1.81 2.98 -67.67 -0.20 1.61 16 28 H 0.11 2.00 6.92 -51.93 -0.36 1.64 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 2.73 5.73 -52.49 -0.30 2.43 16 31 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.60 7.32 -52.48 -0.38 1.22 16 34 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 35 H 0.10 1.44 5.13 -51.93 -0.27 1.17 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.74 7.33 -51.93 -0.38 0.36 16 40 H 0.09 0.81 7.98 -51.93 -0.41 0.40 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.91 7.29 -51.93 -0.38 0.53 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -33.47 343.45 -8.15 -41.62 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.67 Total: 6.31 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.41 Total: -9.98 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.31 Total: -34.86 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.53 Total: -23.48 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.47 -8.15 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839452747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.010 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds