Wall clock time and date at job start Tue Mar 31 2020 10:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47435 * 300.00163 * 3 2 1 6 6 H 1.48498 * 109.46876 * 60.00325 * 3 2 1 7 7 C 1.38695 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00195 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.35518 * 117.00082 * 174.26884 * 9 7 2 11 11 C 1.38840 * 120.16275 * 353.61184 * 10 9 7 12 12 C 1.38018 * 120.07372 * 180.23235 * 11 10 9 13 13 C 1.38580 * 120.40190 * 359.48853 * 12 11 10 14 14 C 1.37829 * 120.32030 * 0.51521 * 13 12 11 15 15 C 1.39664 * 119.92093 * 359.74290 * 14 13 12 16 16 C 1.47533 * 120.19528 * 180.02562 * 15 14 13 17 17 O 1.21598 * 119.99795 * 228.65974 * 16 15 14 18 18 N 1.34766 * 120.00497 * 48.65898 * 16 15 14 19 19 C 1.46801 * 119.53460 * 5.61930 * 18 16 15 20 20 C 1.53891 * 107.35094 * 127.90551 * 19 18 16 21 21 C 1.52739 * 108.32767 * 58.42303 * 20 19 18 22 22 C 1.52930 * 110.86638 * 296.09248 * 21 20 19 23 23 H 1.08998 * 112.99157 * 288.11643 * 22 21 20 24 24 C 1.55606 * 106.87609 * 163.46532 * 22 21 20 25 25 O 1.43756 * 104.98144 * 281.84182 * 24 22 21 26 26 C 1.43522 * 109.84600 * 335.10863 * 25 24 22 27 27 C 1.45037 * 119.54112 * 185.89393 * 18 16 15 28 28 H 1.09004 * 109.72720 * 347.25304 * 27 18 16 29 29 H 0.97002 * 119.99790 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.96187 * 359.96007 * 11 10 9 31 31 H 1.08004 * 119.80046 * 179.74602 * 12 11 10 32 32 H 1.08000 * 119.84019 * 180.25469 * 13 12 11 33 33 H 1.08006 * 120.03399 * 179.72093 * 14 13 12 34 34 H 1.09001 * 109.84108 * 247.47776 * 19 18 16 35 35 H 1.08998 * 109.83450 * 8.44057 * 19 18 16 36 36 H 1.09000 * 109.81614 * 298.66305 * 20 19 18 37 37 H 1.09002 * 109.62076 * 178.06590 * 20 19 18 38 38 H 1.09003 * 109.19769 * 175.74019 * 21 20 19 39 39 H 1.08993 * 109.20264 * 56.45243 * 21 20 19 40 40 H 1.08995 * 110.33906 * 40.71972 * 24 22 21 41 41 H 1.09006 * 110.33811 * 162.96566 * 24 22 21 42 42 H 1.08997 * 109.91140 * 242.36978 * 26 25 24 43 43 H 1.09000 * 109.90644 * 121.10836 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0086 -1.2012 -0.0005 8 1 3.0886 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0005 10 6 2.0673 -3.5022 -0.1217 11 6 3.4310 -3.4280 -0.3712 12 6 4.1746 -4.5837 -0.4990 13 6 3.5707 -5.8242 -0.3692 14 6 2.2180 -5.9170 -0.1216 15 6 1.4517 -4.7563 0.0049 16 6 0.0034 -4.8486 0.2706 17 8 -0.7797 -4.2015 -0.3976 18 7 -0.4516 -5.6500 1.2539 19 6 0.5060 -6.3303 2.1344 20 6 0.0969 -6.0191 3.5849 21 6 -1.3349 -6.5074 3.7954 22 6 -2.3098 -5.7369 2.9040 23 1 -2.4633 -4.7083 3.2305 24 6 -3.6300 -6.5595 2.8618 25 8 -3.3717 -7.6295 1.9372 26 6 -2.3379 -7.2422 1.0201 27 6 -1.8804 -5.8330 1.4237 28 1 -2.4189 -5.0901 0.8352 29 1 -0.4850 0.8401 0.0004 30 1 3.9097 -2.4649 -0.4698 31 1 5.2345 -4.5208 -0.6972 32 1 4.1620 -6.7226 -0.4669 33 1 1.7513 -6.8863 -0.0257 34 1 0.4699 -7.4056 1.9595 35 1 1.5124 -5.9575 1.9445 36 1 0.1478 -4.9446 3.7608 37 1 0.7659 -6.5363 4.2728 38 1 -1.6131 -6.3628 4.8394 39 1 -1.3909 -7.5688 3.5541 40 1 -3.8590 -6.9592 3.8496 41 1 -4.4516 -5.9392 2.5034 42 1 -2.7300 -7.2281 0.0032 43 1 -1.5015 -7.9377 1.0885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839452747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:49 Heat of formation + Delta-G solvation = -94.600974 kcal Electronic energy + Delta-G solvation = -27564.376497 eV Core-core repulsion = 23767.521476 eV Total energy + Delta-G solvation = -3796.855021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14191 -40.91666 -39.57921 -38.09844 -37.30099 -34.37322 -34.17517 -32.78404 -31.68094 -30.64671 -29.57865 -27.43190 -26.66386 -24.94368 -23.76862 -23.26902 -22.95530 -21.68852 -20.01899 -19.90936 -18.81835 -18.21536 -17.64220 -17.22774 -16.72098 -16.45560 -16.36704 -16.04224 -15.77930 -15.44889 -15.37188 -15.20272 -14.93537 -14.54958 -14.34145 -14.28816 -13.95132 -13.65699 -13.56959 -13.34361 -13.03508 -12.75597 -12.69228 -12.54930 -12.43549 -12.34209 -12.11640 -11.83172 -11.74371 -11.48594 -11.43421 -10.87803 -10.77463 -10.55020 -9.81765 -9.62917 -9.07286 -8.49874 -6.20744 0.20031 0.69024 1.30924 1.41025 1.50724 1.70290 1.96196 2.13085 2.79493 2.82215 3.12458 3.31851 3.39691 3.58965 3.77594 3.82624 3.86938 3.99057 4.09165 4.11307 4.18056 4.26609 4.42186 4.52835 4.54396 4.58284 4.61480 4.66925 4.74355 4.77593 4.87482 4.93119 4.99829 5.04549 5.06524 5.11853 5.13721 5.37428 5.48180 5.55685 5.63132 5.68884 5.84939 5.92596 6.14608 6.33117 6.91504 7.21838 7.73978 8.72173 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.004591 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.610206 B = 6098.007117 C = 7273.214299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.024 4.024 3 Si 1.022 2.978 4 H -0.244 1.244 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.419 4.419 8 H 0.108 0.892 9 O -0.212 6.212 10 C 0.146 3.854 11 C -0.249 4.249 12 C -0.044 4.044 13 C -0.190 4.190 14 C -0.033 4.033 15 C -0.231 4.231 16 C 0.563 3.437 17 O -0.581 6.581 18 N -0.591 5.591 19 C 0.096 3.904 20 C -0.133 4.133 21 C -0.103 4.103 22 C -0.132 4.132 23 H 0.087 0.913 24 C 0.057 3.943 25 O -0.386 6.386 26 C 0.055 3.945 27 C 0.107 3.893 28 H 0.065 0.935 29 H 0.271 0.729 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -16.725 8.473 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.167 1.167 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.495 4.495 8 H 0.125 0.875 9 O -0.116 6.116 10 C 0.093 3.907 11 C -0.269 4.269 12 C -0.062 4.062 13 C -0.209 4.209 14 C -0.052 4.052 15 C -0.236 4.236 16 C 0.354 3.646 17 O -0.461 6.461 18 N -0.324 5.324 19 C -0.024 4.024 20 C -0.171 4.171 21 C -0.140 4.140 22 C -0.152 4.152 23 H 0.105 0.895 24 C -0.019 4.019 25 O -0.305 6.305 26 C -0.023 4.023 27 C 0.001 3.999 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.172 0.828 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.092 -16.415 8.162 18.591 hybrid contribution -0.161 1.849 -0.484 1.918 sum 2.931 -14.566 7.678 16.725 Atomic orbital electron populations 1.70286 1.08438 1.28641 1.47779 1.26747 0.96732 1.03154 0.95572 0.84491 0.78511 0.74432 0.78475 1.16673 1.19606 1.19295 1.21987 0.92628 0.81383 1.53483 0.87462 1.84037 1.35844 1.12620 1.79134 1.19941 0.91746 0.87012 0.92032 1.21289 0.92866 1.00941 1.11760 1.21421 1.00481 0.91182 0.93085 1.21172 0.94139 0.98365 1.07184 1.21210 0.94089 0.95435 0.94435 1.19046 0.92826 0.92725 1.18965 1.18729 0.88754 0.77522 0.79586 1.90768 1.59081 1.44894 1.51354 1.47315 1.05986 1.47152 1.31905 1.22423 0.92785 0.98107 0.89131 1.21993 0.97945 1.01080 0.96123 1.21451 0.92948 0.99938 0.99712 1.23118 0.97323 1.00873 0.93858 0.89497 1.23670 0.95197 0.88279 0.94758 1.88455 1.56770 1.39438 1.45870 1.23203 0.91440 0.94393 0.93229 1.21787 0.82187 0.98011 0.97885 0.91675 0.92000 0.85905 0.82738 0.81661 0.82844 0.87959 0.88945 0.94049 0.87189 0.89373 0.89787 0.86309 0.92209 0.91750 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.48 13.67 21.62 0.30 -59.18 16 2 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 3 Si 1.02 43.84 29.55 68.60 2.03 45.86 16 4 H -0.24 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.42 -25.00 9.43 67.93 0.64 -24.36 16 8 H 0.11 5.73 5.32 -2.91 -0.02 5.72 16 9 O -0.21 -13.35 8.80 -10.95 -0.10 -13.45 16 10 C 0.15 7.41 6.63 22.91 0.15 7.56 16 11 C -0.25 -10.40 9.12 22.36 0.20 -10.19 16 12 C -0.04 -1.31 10.03 22.30 0.22 -1.08 16 13 C -0.19 -4.88 10.03 22.25 0.22 -4.65 16 14 C -0.03 -1.00 7.54 22.52 0.17 -0.83 16 15 C -0.23 -9.95 4.77 -19.99 -0.10 -10.05 16 16 C 0.56 26.04 6.91 86.70 0.60 26.64 16 17 O -0.58 -34.00 15.84 5.05 0.08 -33.92 16 18 N -0.59 -20.26 2.71 -798.68 -2.17 -22.43 16 19 C 0.10 2.32 4.96 86.62 0.43 2.75 16 20 C -0.13 -2.82 6.12 30.81 0.19 -2.63 16 21 C -0.10 -1.94 4.82 30.48 0.15 -1.79 16 22 C -0.13 -3.32 3.79 -9.43 -0.04 -3.36 16 23 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 24 C 0.06 1.22 7.04 72.88 0.51 1.73 16 25 O -0.39 -9.63 11.05 -148.98 -1.65 -11.27 16 26 C 0.06 1.44 7.02 72.17 0.51 1.95 16 27 C 0.11 3.42 2.98 45.94 0.14 3.56 16 28 H 0.06 2.66 6.92 -2.38 -0.02 2.65 16 29 H 0.27 16.13 8.31 -92.71 -0.77 15.35 16 30 H 0.12 5.22 5.73 -2.91 -0.02 5.21 16 31 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.15 3.44 7.32 -2.91 -0.02 3.42 16 34 H 0.10 1.73 7.56 -2.39 -0.02 1.71 16 35 H 0.09 2.40 5.13 -2.39 -0.01 2.39 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.39 7.33 -2.39 -0.02 1.38 16 40 H 0.12 1.82 7.98 -2.39 -0.02 1.80 16 41 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 2.04 7.29 -2.39 -0.02 2.02 16 Total: -1.00 -86.53 343.45 3.99 -82.54 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.03 Total: 27.56 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.47 Total: -15.71 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -1.87 Total: -81.61 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -1.66 Total: -58.65 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -86.53 3.99 -82.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839452747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.061 kcal (2) G-P(sol) polarization free energy of solvation -86.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds