Wall clock time and date at job start Tue Mar 31 2020 12:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 115.55227 * 2 1 4 4 O 1.20826 * 119.99919 * 145.72399 * 3 2 1 5 5 O 1.34231 * 119.99533 * 325.72539 * 3 2 1 6 6 C 1.45200 * 116.99623 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47005 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00196 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99582 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99608 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46965 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99722 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99618 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00334 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99587 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46835 * 60.00900 * 15 13 11 17 17 H 1.48502 * 109.46918 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47562 * 300.00568 * 15 13 11 19 19 C 1.53000 * 117.49917 * 214.33411 * 2 1 3 20 20 C 1.52999 * 60.00076 * 252.48529 * 19 2 1 21 21 H 1.09004 * 117.49492 * 252.50920 * 20 19 2 22 22 C 1.50690 * 117.49954 * 107.48839 * 20 19 2 23 23 C 1.38236 * 120.00522 * 351.10735 * 22 20 19 24 24 C 1.38236 * 120.00376 * 179.74754 * 23 22 20 25 25 C 1.38237 * 119.99532 * 0.54290 * 24 23 22 26 26 C 1.38234 * 120.00273 * 359.71025 * 25 24 23 27 27 C 1.38235 * 120.00057 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47290 * 34.41102 * 1 2 3 29 29 H 1.08995 * 109.47063 * 154.41846 * 1 2 3 30 30 H 1.09001 * 109.46811 * 274.41461 * 1 2 3 31 31 H 1.09005 * 109.47381 * 300.00009 * 6 5 3 32 32 H 1.08997 * 109.47360 * 60.00094 * 6 5 3 33 33 H 0.97000 * 120.00651 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.46960 * 300.00229 * 10 9 7 35 35 H 1.08997 * 109.47056 * 59.99870 * 10 9 7 36 36 H 0.97001 * 119.99748 * 179.97438 * 14 13 11 37 37 H 1.09004 * 117.49837 * 359.97438 * 19 2 1 38 38 H 1.08999 * 117.50124 * 144.99404 * 19 2 1 39 39 H 1.08001 * 119.99312 * 359.97438 * 23 22 20 40 40 H 1.08004 * 119.99779 * 180.27406 * 24 23 22 41 41 H 1.07999 * 119.99372 * 179.72416 * 25 24 23 42 42 H 1.07997 * 120.00001 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.00326 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2207 1.5317 0.5893 5 8 1.6028 2.3794 -0.6547 6 6 2.2845 3.6607 -0.6114 7 6 1.4945 4.6768 -1.3952 8 8 0.4591 4.3530 -1.9373 9 7 1.9386 5.9455 -1.4937 10 6 1.1708 6.9332 -2.2562 11 6 1.8784 8.2630 -2.2112 12 1 2.8069 8.3626 -1.6686 13 6 1.3404 9.3525 -2.8628 14 7 0.2095 9.2314 -3.5231 15 14 2.2171 11.0011 -2.8064 16 1 3.5717 10.8618 -3.3988 17 1 1.4389 12.0022 -3.5793 18 1 2.3374 11.4499 -1.3960 19 6 2.2364 -1.1207 -0.7654 20 6 2.2369 -1.1210 0.7645 21 1 3.1722 -0.8751 1.2675 22 6 1.3730 -2.1409 1.4604 23 6 0.4821 -2.9055 0.7307 24 6 -0.3067 -3.8447 1.3683 25 6 -0.2126 -4.0115 2.7373 26 6 0.6745 -3.2432 3.4679 27 6 1.4672 -2.3078 2.8295 28 1 -0.3633 0.8478 -0.5807 29 1 -0.3633 -0.9269 -0.4437 30 1 -0.3633 0.0791 1.0246 31 1 2.3736 3.9902 0.4238 32 1 3.2785 3.5583 -1.0469 33 1 2.7666 6.2047 -1.0599 34 1 1.0822 6.6040 -3.2916 35 1 0.1767 7.0352 -1.8211 36 1 -0.1691 9.9980 -3.9812 37 1 1.6111 -1.8582 -1.2687 38 1 3.1713 -0.8746 -1.2690 39 1 0.4049 -2.7716 -0.3382 40 1 -0.9996 -4.4452 0.7974 41 1 -0.8321 -4.7421 3.2361 42 1 0.7477 -3.3732 4.5375 43 1 2.1600 -1.7073 3.4002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840601789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:57 Heat of formation + Delta-G solvation = -75.474103 kcal Electronic energy + Delta-G solvation = -24948.336712 eV Core-core repulsion = 21152.311095 eV Total energy + Delta-G solvation = -3796.025617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10773 -39.86399 -38.76445 -37.46746 -36.20196 -34.26147 -32.42445 -31.43846 -31.11613 -29.46870 -28.67398 -26.75451 -24.32425 -24.19636 -22.73116 -22.40249 -21.01182 -19.97512 -19.71291 -17.60497 -17.52672 -17.18041 -16.62036 -16.57091 -15.64435 -15.41923 -15.21843 -15.01501 -14.73591 -14.41793 -14.27971 -13.77441 -13.66029 -13.38414 -13.12142 -12.87358 -12.77638 -12.50461 -12.38334 -12.19612 -11.99314 -11.78221 -11.54080 -11.33377 -11.04392 -10.92137 -10.91700 -10.72743 -10.61243 -10.38257 -10.35329 -9.46809 -9.23979 -9.20074 -8.91801 -8.79007 -8.00334 -6.20443 -4.28092 0.92043 1.07267 1.95348 2.32131 3.15725 3.22274 3.23594 3.28506 3.29924 3.65638 3.89704 4.16736 4.23677 4.31852 4.39872 4.55571 4.65231 4.67786 4.76929 4.83167 5.09444 5.13617 5.15456 5.21385 5.23774 5.28551 5.32480 5.42330 5.55814 5.59516 5.65665 5.69655 5.73208 6.05513 6.14155 6.18836 6.27813 6.30401 6.65278 7.21077 7.29060 7.44498 7.57041 7.65626 7.90878 8.48366 8.69660 8.94732 9.38272 10.89595 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.001934 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.462850 B =14472.926782 C =14695.165658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.122 4.122 3 C 0.498 3.502 4 O -0.510 6.510 5 O -0.320 6.320 6 C 0.048 3.952 7 C 0.500 3.500 8 O -0.533 6.533 9 N -0.707 5.707 10 C 0.251 3.749 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.906 3.094 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.138 4.138 20 C -0.081 4.081 21 H 0.128 0.872 22 C -0.051 4.051 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.108 4.108 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 -26.383 11.151 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.123 4.123 3 C 0.341 3.659 4 O -0.399 6.399 5 O -0.235 6.235 6 C -0.030 4.030 7 C 0.283 3.717 8 O -0.411 6.411 9 N -0.357 5.357 10 C 0.131 3.869 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.175 4.175 20 C -0.099 4.099 21 H 0.146 0.854 22 C -0.051 4.051 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.126 4.126 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.186 -26.381 10.782 28.583 hybrid contribution 1.004 1.271 0.298 1.647 sum 3.190 -25.110 11.080 27.631 Atomic orbital electron populations 1.21426 0.89046 1.03835 1.03160 1.21052 0.96982 0.85492 1.08763 1.22430 0.82497 0.85833 0.75116 1.90654 1.23310 1.84071 1.41838 1.86538 1.51362 1.18370 1.67192 1.22902 0.96426 0.81143 1.02502 1.19866 0.86311 0.83429 0.82119 1.90709 1.23914 1.79396 1.47034 1.46370 1.27076 1.08878 1.53358 1.19176 0.91670 0.84750 0.91266 1.21171 1.08873 0.93962 1.34463 0.91811 1.24952 0.94948 0.99348 0.94731 1.69963 1.18386 1.31447 1.32365 0.86442 0.79477 0.82527 0.78273 1.20036 1.21031 1.20038 1.23393 1.02425 0.97851 0.93804 1.21304 0.99756 0.94873 0.93962 0.85371 1.19006 0.96546 0.95997 0.93515 1.21122 0.96012 0.96027 1.00138 1.21139 0.99366 0.98306 0.94803 1.21182 0.98823 0.99716 0.94344 1.21146 0.96356 0.96194 0.99963 1.21016 0.99612 0.98267 0.93716 0.89867 0.91137 0.91599 0.88492 0.88495 0.77431 0.95245 0.95244 0.92304 0.86697 0.87383 0.85662 0.85938 0.86129 0.85967 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.58 37.16 0.32 -0.88 16 2 C -0.12 -1.32 2.64 -155.66 -0.41 -1.73 16 3 C 0.50 6.98 7.50 36.01 0.27 7.25 16 4 O -0.51 -7.81 16.01 -18.75 -0.30 -8.11 16 5 O -0.32 -5.14 9.02 -45.91 -0.41 -5.55 16 6 C 0.05 0.73 5.94 36.01 0.21 0.95 16 7 C 0.50 10.03 7.91 -10.98 -0.09 9.94 16 8 O -0.53 -13.00 16.50 -14.10 -0.23 -13.23 16 9 N -0.71 -14.61 5.55 -61.47 -0.34 -14.95 16 10 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 11 C -0.55 -14.62 9.28 -34.44 -0.32 -14.94 16 12 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 15 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.14 -1.16 9.22 -26.73 -0.25 -1.41 16 20 C -0.08 -0.75 5.55 -91.78 -0.51 -1.26 16 21 H 0.13 1.25 7.67 -51.93 -0.40 0.85 16 22 C -0.05 -0.43 5.05 -104.63 -0.53 -0.96 16 23 C -0.12 -0.88 7.77 -39.58 -0.31 -1.18 16 24 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 26 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 27 C -0.11 -0.89 9.74 -39.58 -0.39 -1.28 16 28 H 0.08 0.99 7.49 -51.93 -0.39 0.60 16 29 H 0.07 0.57 5.88 -51.93 -0.31 0.27 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.31 8.13 -51.93 -0.42 0.88 16 32 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 33 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.11 0.74 6.09 -51.93 -0.32 0.42 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.13 0.78 5.15 -52.49 -0.27 0.51 16 40 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -33.48 369.01 -9.10 -42.58 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.78 Total: 4.15 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.31 Total: -1.01 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.40 Total: -40.00 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.95 Total: -26.90 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.48 -9.10 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840601789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.895 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds