Wall clock time and date at job start Tue Mar 31 2020 12:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 115.55227 * 2 1 4 4 O 1.20826 * 119.99919 * 145.72399 * 3 2 1 5 5 O 1.34231 * 119.99533 * 325.72539 * 3 2 1 6 6 C 1.45200 * 116.99623 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47005 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00196 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99582 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99608 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46965 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99722 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99618 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00334 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99587 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46835 * 60.00900 * 15 13 11 17 17 H 1.48502 * 109.46918 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47562 * 300.00568 * 15 13 11 19 19 C 1.53000 * 117.49917 * 214.33411 * 2 1 3 20 20 C 1.52999 * 60.00076 * 252.48529 * 19 2 1 21 21 H 1.09004 * 117.49492 * 252.50920 * 20 19 2 22 22 C 1.50690 * 117.49954 * 107.48839 * 20 19 2 23 23 C 1.38236 * 120.00522 * 351.10735 * 22 20 19 24 24 C 1.38236 * 120.00376 * 179.74754 * 23 22 20 25 25 C 1.38237 * 119.99532 * 0.54290 * 24 23 22 26 26 C 1.38234 * 120.00273 * 359.71025 * 25 24 23 27 27 C 1.38235 * 120.00057 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47290 * 34.41102 * 1 2 3 29 29 H 1.08995 * 109.47063 * 154.41846 * 1 2 3 30 30 H 1.09001 * 109.46811 * 274.41461 * 1 2 3 31 31 H 1.09005 * 109.47381 * 300.00009 * 6 5 3 32 32 H 1.08997 * 109.47360 * 60.00094 * 6 5 3 33 33 H 0.97000 * 120.00651 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.46960 * 300.00229 * 10 9 7 35 35 H 1.08997 * 109.47056 * 59.99870 * 10 9 7 36 36 H 0.97001 * 119.99748 * 179.97438 * 14 13 11 37 37 H 1.09004 * 117.49837 * 359.97438 * 19 2 1 38 38 H 1.08999 * 117.50124 * 144.99404 * 19 2 1 39 39 H 1.08001 * 119.99312 * 359.97438 * 23 22 20 40 40 H 1.08004 * 119.99779 * 180.27406 * 24 23 22 41 41 H 1.07999 * 119.99372 * 179.72416 * 25 24 23 42 42 H 1.07997 * 120.00001 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.00326 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2207 1.5317 0.5893 5 8 1.6028 2.3794 -0.6547 6 6 2.2845 3.6607 -0.6114 7 6 1.4945 4.6768 -1.3952 8 8 0.4591 4.3530 -1.9373 9 7 1.9386 5.9455 -1.4937 10 6 1.1708 6.9332 -2.2562 11 6 1.8784 8.2630 -2.2112 12 1 2.8069 8.3626 -1.6686 13 6 1.3404 9.3525 -2.8628 14 7 0.2095 9.2314 -3.5231 15 14 2.2171 11.0011 -2.8064 16 1 3.5717 10.8618 -3.3988 17 1 1.4389 12.0022 -3.5793 18 1 2.3374 11.4499 -1.3960 19 6 2.2364 -1.1207 -0.7654 20 6 2.2369 -1.1210 0.7645 21 1 3.1722 -0.8751 1.2675 22 6 1.3730 -2.1409 1.4604 23 6 0.4821 -2.9055 0.7307 24 6 -0.3067 -3.8447 1.3683 25 6 -0.2126 -4.0115 2.7373 26 6 0.6745 -3.2432 3.4679 27 6 1.4672 -2.3078 2.8295 28 1 -0.3633 0.8478 -0.5807 29 1 -0.3633 -0.9269 -0.4437 30 1 -0.3633 0.0791 1.0246 31 1 2.3736 3.9902 0.4238 32 1 3.2785 3.5583 -1.0469 33 1 2.7666 6.2047 -1.0599 34 1 1.0822 6.6040 -3.2916 35 1 0.1767 7.0352 -1.8211 36 1 -0.1691 9.9980 -3.9812 37 1 1.6111 -1.8582 -1.2687 38 1 3.1713 -0.8746 -1.2690 39 1 0.4049 -2.7716 -0.3382 40 1 -0.9996 -4.4452 0.7974 41 1 -0.8321 -4.7421 3.2361 42 1 0.7477 -3.3732 4.5375 43 1 2.1600 -1.7073 3.4002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840601789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:56 Heat of formation + Delta-G solvation = -94.674240 kcal Electronic energy + Delta-G solvation = -24949.169293 eV Core-core repulsion = 21152.311095 eV Total energy + Delta-G solvation = -3796.858198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11944 -40.81071 -40.20891 -38.32562 -37.32874 -36.20118 -34.43201 -32.04003 -31.70179 -30.87108 -29.61719 -28.52551 -25.42841 -24.84114 -24.38765 -23.19668 -21.75885 -21.66480 -20.64326 -19.21036 -18.62428 -17.98268 -17.85406 -17.76042 -17.21732 -16.97270 -16.24680 -16.14856 -16.01035 -15.64171 -15.04207 -14.82417 -14.62842 -14.41898 -14.25175 -14.14395 -13.96006 -13.74214 -13.61611 -13.27359 -13.23171 -12.96718 -12.92510 -12.69092 -12.24991 -12.18362 -11.96576 -11.89845 -11.60311 -11.55233 -11.53183 -11.18615 -10.93466 -10.81631 -9.95183 -9.77714 -9.50958 -8.30218 -6.47127 0.33052 0.53559 0.91946 1.17924 1.44058 1.47328 1.52423 1.55845 2.31721 2.50503 2.54564 3.02706 3.04798 3.41420 3.46185 3.57550 3.70258 3.78131 3.94421 3.99867 4.01255 4.15878 4.20011 4.31748 4.57419 4.63734 4.68731 4.73811 4.80730 4.84125 4.99542 5.05432 5.13457 5.17173 5.19349 5.20457 5.25240 5.39917 5.61079 5.61351 5.66781 5.71028 5.80838 6.13481 6.50127 6.61363 6.75956 7.18863 7.33604 8.81595 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.001934 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.462850 B =14472.926782 C =14695.165658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.141 4.141 3 C 0.498 3.502 4 O -0.526 6.526 5 O -0.340 6.340 6 C 0.058 3.942 7 C 0.500 3.500 8 O -0.582 6.582 9 N -0.699 5.699 10 C 0.267 3.733 11 C -0.559 4.559 12 H 0.086 0.914 13 C 0.005 3.995 14 N -0.929 5.929 15 Si 0.986 3.014 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.263 1.263 19 C -0.123 4.123 20 C -0.071 4.071 21 H 0.120 0.880 22 C -0.065 4.065 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.124 4.124 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.412 0.588 34 H -0.007 1.007 35 H -0.008 1.008 36 H 0.269 0.731 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -27.415 12.106 30.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C 0.343 3.657 4 O -0.415 6.415 5 O -0.255 6.255 6 C -0.018 4.018 7 C 0.286 3.714 8 O -0.462 6.462 9 N -0.350 5.350 10 C 0.145 3.855 11 C -0.597 4.597 12 H 0.104 0.896 13 C -0.195 4.195 14 N -0.568 5.568 15 Si 0.809 3.191 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.187 1.187 19 C -0.159 4.159 20 C -0.089 4.089 21 H 0.138 0.862 22 C -0.065 4.065 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.249 0.751 34 H 0.011 0.989 35 H 0.010 0.990 36 H 0.078 0.922 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.156 0.844 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.643 -27.437 11.774 30.078 hybrid contribution 0.526 1.480 0.036 1.571 sum 4.170 -25.958 11.810 28.821 Atomic orbital electron populations 1.21360 0.88759 1.03951 1.02699 1.21153 0.97210 0.84329 1.11556 1.23024 0.82318 0.86180 0.74224 1.90636 1.24089 1.84323 1.42493 1.86544 1.52185 1.18846 1.67959 1.22774 0.96011 0.80087 1.02956 1.20640 0.85788 0.83681 0.81291 1.90685 1.26278 1.80210 1.49045 1.46048 1.27386 1.08585 1.52991 1.18632 0.90942 0.86354 0.89618 1.21581 1.09575 0.93987 1.34530 0.89604 1.26057 0.95588 1.03873 0.94017 1.70125 1.20335 1.32834 1.33458 0.85194 0.78330 0.76817 0.78796 1.18669 1.21116 1.18716 1.23586 1.02416 0.96419 0.93513 1.21266 0.99140 0.93918 0.94625 0.86197 1.19040 0.97237 0.96414 0.93763 1.21312 0.95754 0.95949 1.00847 1.21448 0.99408 0.98204 0.95135 1.21506 0.98660 0.99775 0.94592 1.21398 0.96195 0.95937 1.00939 1.21187 1.00197 0.98901 0.93933 0.92143 0.88935 0.91978 0.85995 0.85746 0.75130 0.98911 0.98970 0.92178 0.84345 0.87065 0.84357 0.83977 0.84185 0.84457 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 8.58 71.98 0.62 -1.58 16 2 C -0.14 -2.94 2.64 -52.93 -0.14 -3.08 16 3 C 0.50 13.66 7.50 71.24 0.53 14.20 16 4 O -0.53 -15.62 16.01 21.96 0.35 -15.26 16 5 O -0.34 -10.85 9.02 -45.07 -0.41 -11.26 16 6 C 0.06 1.74 5.94 71.24 0.42 2.16 16 7 C 0.50 20.32 7.91 87.66 0.69 21.02 16 8 O -0.58 -29.51 16.50 15.77 0.26 -29.25 16 9 N -0.70 -29.09 5.55 -466.76 -2.59 -31.68 16 10 C 0.27 14.47 5.43 85.63 0.46 14.93 16 11 C -0.56 -29.98 9.28 25.60 0.24 -29.74 16 12 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 13 C 0.00 0.25 5.46 84.65 0.46 0.71 16 14 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 15 Si 0.99 41.88 29.54 68.60 2.03 43.90 16 16 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 17 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 C -0.12 -1.85 9.22 30.59 0.28 -1.56 16 20 C -0.07 -1.24 5.55 -11.54 -0.06 -1.30 16 21 H 0.12 2.27 7.67 -2.39 -0.02 2.25 16 22 C -0.06 -1.03 5.05 -19.87 -0.10 -1.13 16 23 C -0.12 -1.59 7.77 22.27 0.17 -1.42 16 24 C -0.12 -1.45 10.05 22.27 0.22 -1.22 16 25 C -0.13 -1.49 10.05 22.27 0.22 -1.26 16 26 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 27 C -0.12 -1.94 9.74 22.27 0.22 -1.73 16 28 H 0.06 1.47 7.49 -2.39 -0.02 1.46 16 29 H 0.09 1.36 5.88 -2.39 -0.01 1.35 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 3.06 8.13 -2.38 -0.02 3.04 16 32 H 0.12 3.06 8.13 -2.39 -0.02 3.04 16 33 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 34 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.14 1.39 6.09 -2.38 -0.01 1.38 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.14 1.35 5.15 -2.91 -0.01 1.33 16 40 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.12 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -74.80 369.01 4.66 -70.13 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.27 Total: 21.10 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 4.47 Total: 7.55 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.31 Total: -86.92 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: 0.21 Total: -55.77 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -74.80 4.66 -70.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840601789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.541 kcal (2) G-P(sol) polarization free energy of solvation -74.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds