Wall clock time and date at job start Tue Mar 31 2020 10:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46772 * 269.99969 * 3 2 1 5 5 H 1.48498 * 109.47072 * 29.99414 * 3 2 1 6 6 H 1.48500 * 109.47349 * 149.99806 * 3 2 1 7 7 C 1.38700 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99551 * 0.02562 * 7 2 1 9 9 O 1.34808 * 120.00218 * 180.02562 * 7 2 1 10 10 C 1.35515 * 117.00369 * 174.87458 * 9 7 2 11 11 C 1.38842 * 120.15880 * 5.92168 * 10 9 7 12 12 C 1.38028 * 120.07016 * 180.28189 * 11 10 9 13 13 C 1.38570 * 120.40278 * 359.73315 * 12 11 10 14 14 C 1.37824 * 120.32626 * 359.97438 * 13 12 11 15 15 C 1.39672 * 119.91756 * 0.02565 * 14 13 12 16 16 C 1.47535 * 120.19819 * 179.97438 * 15 14 13 17 17 O 1.21591 * 119.99374 * 234.00005 * 16 15 14 18 18 N 1.34773 * 120.00214 * 53.99565 * 16 15 14 19 19 C 1.47142 * 121.00208 * 356.14009 * 18 16 15 20 20 C 1.53053 * 107.71121 * 122.62590 * 19 18 16 21 21 C 1.51155 * 111.07987 * 54.40839 * 20 19 18 22 22 H 1.09003 * 107.69587 * 185.25990 * 21 20 19 23 23 O 1.42634 * 113.46469 * 65.54304 * 21 20 19 24 24 C 1.43674 * 109.11481 * 208.87259 * 23 21 20 25 25 C 1.54552 * 107.47694 * 2.29046 * 24 23 21 26 26 C 1.54034 * 113.09164 * 304.73293 * 21 20 19 27 27 H 1.08999 * 112.90023 * 283.89171 * 26 21 20 28 28 C 1.46536 * 120.99994 * 176.12011 * 18 16 15 29 29 H 0.97001 * 120.00267 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.96430 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.79779 * 179.71835 * 12 11 10 32 32 H 1.08006 * 119.83913 * 180.02562 * 13 12 11 33 33 H 1.07997 * 120.04762 * 180.02562 * 14 13 12 34 34 H 1.09002 * 109.80902 * 242.17343 * 19 18 16 35 35 H 1.08998 * 109.80792 * 3.01264 * 19 18 16 36 36 H 1.09007 * 109.15082 * 293.99799 * 20 19 18 37 37 H 1.08997 * 109.15953 * 174.82508 * 20 19 18 38 38 H 1.09003 * 109.84582 * 121.77377 * 24 23 21 39 39 H 1.09006 * 109.84815 * 242.69780 * 24 23 21 40 40 H 1.08997 * 110.93171 * 140.10140 * 25 24 23 41 41 H 1.08992 * 110.93335 * 263.73786 * 25 24 23 42 42 H 1.09007 * 109.35255 * 115.38556 * 28 18 16 43 43 H 1.08990 * 109.35565 * 355.81298 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0088 -1.2011 0.0005 8 1 1.4688 -2.1365 0.0005 9 8 3.3569 -1.2011 0.0011 10 6 3.9722 -2.4036 0.1094 11 6 3.2251 -3.5737 0.0900 12 6 3.8531 -4.7973 0.2064 13 6 5.2308 -4.8687 0.3376 14 6 5.9890 -3.7179 0.3528 15 6 5.3675 -2.4726 0.2360 16 6 6.1731 -1.2367 0.2521 17 8 5.9109 -0.3505 1.0423 18 7 7.1995 -1.0901 -0.6089 19 6 7.5892 -2.1808 -1.5164 20 6 7.5113 -1.6455 -2.9481 21 6 8.3366 -0.3888 -3.1043 22 1 8.1679 -0.0045 -4.1103 23 8 9.7368 -0.6048 -2.9393 24 6 10.3422 0.5972 -2.4363 25 6 9.2131 1.6302 -2.2202 26 6 7.9550 0.7136 -2.0985 27 1 7.0277 1.2235 -2.3596 28 6 7.9607 0.1606 -0.6697 29 1 -0.4850 0.8400 -0.0004 30 1 2.1509 -3.5262 -0.0113 31 1 3.2673 -5.7045 0.1953 32 1 5.7128 -5.8310 0.4276 33 1 7.0624 -3.7789 0.4549 34 1 8.6082 -2.4985 -1.2957 35 1 6.9061 -3.0218 -1.3977 36 1 6.4721 -1.4234 -3.1908 37 1 7.8835 -2.4056 -3.6349 38 1 10.8420 0.3916 -1.4896 39 1 11.0625 0.9795 -3.1596 40 1 9.3732 2.1957 -1.3022 41 1 9.1274 2.2984 -3.0770 42 1 8.9886 -0.0267 -0.3590 43 1 7.5099 0.8909 0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843977978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:57 Heat of formation + Delta-G solvation = -68.300899 kcal Electronic energy + Delta-G solvation = -27600.218891 eV Core-core repulsion = 23804.504327 eV Total energy + Delta-G solvation = -3795.714564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83945 -39.64039 -38.25986 -36.58967 -35.68568 -33.10042 -32.48170 -31.76639 -30.65886 -29.28084 -28.60467 -25.75888 -25.25612 -23.72703 -22.83740 -21.65198 -21.44143 -20.48224 -19.03485 -18.01460 -17.34263 -16.89098 -16.39632 -16.05339 -15.80667 -15.42865 -14.89057 -14.57927 -14.37432 -14.08302 -13.84253 -13.78381 -13.50998 -13.24797 -13.12460 -12.71837 -12.63184 -12.34584 -12.27792 -12.13029 -11.81985 -11.55528 -11.43830 -11.27343 -11.09682 -10.95596 -10.86274 -10.74369 -10.53182 -10.18471 -9.65098 -9.60106 -9.21274 -8.93801 -8.41693 -8.29985 -7.52286 -6.49428 -4.15955 1.67405 2.13301 3.13605 3.23570 3.26144 3.37754 3.53862 3.63357 4.25898 4.26570 4.34236 4.48004 4.66340 4.67240 4.87457 4.96521 4.98734 5.03096 5.05271 5.18760 5.27435 5.37391 5.41467 5.50426 5.58653 5.61588 5.65199 5.71587 5.80292 5.82802 5.89234 5.94553 5.98998 6.05082 6.14872 6.34549 6.50638 6.75104 6.84351 6.86589 6.97902 7.13011 7.44708 7.63530 7.75690 7.92506 8.68214 8.85499 9.45657 10.56629 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.005359 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.124978 B = 5223.231030 C = 6773.289327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.072 3.928 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.192 6.192 10 C 0.197 3.803 11 C -0.222 4.222 12 C -0.056 4.056 13 C -0.213 4.213 14 C -0.048 4.048 15 C -0.213 4.213 16 C 0.579 3.421 17 O -0.526 6.526 18 N -0.615 5.615 19 C 0.105 3.895 20 C -0.132 4.132 21 C 0.091 3.909 22 H 0.057 0.943 23 O -0.374 6.374 24 C 0.051 3.949 25 C -0.153 4.153 26 C -0.134 4.134 27 H 0.104 0.896 28 C 0.122 3.878 29 H 0.281 0.719 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.698 -2.707 -6.012 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.468 4.468 8 H 0.127 0.873 9 O -0.094 6.094 10 C 0.142 3.858 11 C -0.241 4.241 12 C -0.074 4.074 13 C -0.232 4.232 14 C -0.066 4.066 15 C -0.218 4.218 16 C 0.369 3.631 17 O -0.401 6.401 18 N -0.349 5.349 19 C -0.018 4.018 20 C -0.170 4.170 21 C 0.033 3.967 22 H 0.075 0.925 23 O -0.293 6.293 24 C -0.026 4.026 25 C -0.191 4.191 26 C -0.154 4.154 27 H 0.122 0.878 28 C -0.001 4.001 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.508 -2.014 -5.619 18.497 hybrid contribution -0.008 0.888 -0.121 0.896 sum 17.500 -1.126 -5.741 18.452 Atomic orbital electron populations 1.69622 1.05645 1.28801 1.46694 1.24443 0.94956 0.98953 0.94974 0.86340 0.81663 0.81231 0.79174 1.20004 1.20681 1.16535 1.20821 0.76638 0.96766 1.52583 0.87348 1.83594 1.22749 1.25415 1.77684 1.18901 0.89897 0.85873 0.91166 1.21265 1.01341 0.91562 1.09910 1.20956 0.94363 0.96786 0.95338 1.20562 0.93990 0.97297 1.11356 1.20738 0.98554 0.90729 0.96624 1.18723 0.91148 0.93091 1.18829 1.18247 0.78427 0.86854 0.79599 1.90772 1.68055 1.42915 1.38390 1.47940 1.33248 1.14768 1.38981 1.21914 1.01259 0.90532 0.88052 1.21606 1.00302 0.97076 0.98052 1.21962 0.81583 0.95351 0.97803 0.92541 1.88342 1.19854 1.35008 1.86110 1.23191 0.95478 0.84896 0.99004 1.23365 0.94230 0.98162 1.03364 1.23288 0.99282 0.96234 0.96571 0.87753 1.21401 0.95987 0.87152 0.95564 0.90849 0.84388 0.86770 0.86835 0.86391 0.91074 0.88023 0.89671 0.90013 0.91275 0.91422 0.89598 0.90313 0.91647 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.12 13.96 55.48 0.77 -24.34 16 2 C 0.07 2.04 5.49 -17.52 -0.10 1.94 16 3 Si 0.89 22.47 28.62 -169.99 -4.86 17.60 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.24 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.39 -11.09 9.95 30.90 0.31 -10.78 16 8 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 9 O -0.19 -5.19 7.78 -2.76 -0.02 -5.21 16 10 C 0.20 4.58 6.64 -38.59 -0.26 4.32 16 11 C -0.22 -4.59 9.16 -39.44 -0.36 -4.95 16 12 C -0.06 -0.94 10.03 -39.54 -0.40 -1.33 16 13 C -0.21 -3.25 10.02 -39.61 -0.40 -3.65 16 14 C -0.05 -0.77 7.41 -39.20 -0.29 -1.07 16 15 C -0.21 -4.33 4.95 -104.81 -0.52 -4.84 16 16 C 0.58 11.98 6.87 -12.47 -0.09 11.89 16 17 O -0.53 -13.05 16.18 1.70 0.03 -13.02 16 18 N -0.61 -9.97 2.93 -174.21 -0.51 -10.48 16 19 C 0.11 1.37 5.61 -3.66 -0.02 1.35 16 20 C -0.13 -1.57 5.81 -27.63 -0.16 -1.73 16 21 C 0.09 1.06 3.01 -27.12 -0.08 0.97 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 O -0.37 -4.40 11.03 -35.23 -0.39 -4.79 16 24 C 0.05 0.47 7.05 37.97 0.27 0.74 16 25 C -0.15 -1.39 6.35 -24.23 -0.15 -1.54 16 26 C -0.13 -1.62 3.91 -88.29 -0.35 -1.96 16 27 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 28 C 0.12 1.73 5.47 -3.92 -0.02 1.71 16 29 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.14 2.97 5.64 -52.49 -0.30 2.68 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.12 1.58 7.35 -52.49 -0.39 1.20 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.35 4.64 -51.93 -0.24 1.11 16 36 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.70 7.96 -51.93 -0.41 0.29 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.82 6.86 -51.92 -0.36 0.46 16 43 H 0.09 1.49 7.01 -51.93 -0.36 1.13 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -32.69 343.68 -8.10 -40.79 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.69 Total: 3.21 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.61 Total: -8.94 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.26 Total: -34.82 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.38 Total: -23.02 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.86 Total: 17.60 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.69 -8.10 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843977978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.513 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds