Wall clock time and date at job start Tue Mar 31 2020 10:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46772 * 269.99969 * 3 2 1 5 5 H 1.48498 * 109.47072 * 29.99414 * 3 2 1 6 6 H 1.48500 * 109.47349 * 149.99806 * 3 2 1 7 7 C 1.38700 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99551 * 0.02562 * 7 2 1 9 9 O 1.34808 * 120.00218 * 180.02562 * 7 2 1 10 10 C 1.35515 * 117.00369 * 174.87458 * 9 7 2 11 11 C 1.38842 * 120.15880 * 5.92168 * 10 9 7 12 12 C 1.38028 * 120.07016 * 180.28189 * 11 10 9 13 13 C 1.38570 * 120.40278 * 359.73315 * 12 11 10 14 14 C 1.37824 * 120.32626 * 359.97438 * 13 12 11 15 15 C 1.39672 * 119.91756 * 0.02565 * 14 13 12 16 16 C 1.47535 * 120.19819 * 179.97438 * 15 14 13 17 17 O 1.21591 * 119.99374 * 234.00005 * 16 15 14 18 18 N 1.34773 * 120.00214 * 53.99565 * 16 15 14 19 19 C 1.47142 * 121.00208 * 356.14009 * 18 16 15 20 20 C 1.53053 * 107.71121 * 122.62590 * 19 18 16 21 21 C 1.51155 * 111.07987 * 54.40839 * 20 19 18 22 22 H 1.09003 * 107.69587 * 185.25990 * 21 20 19 23 23 O 1.42634 * 113.46469 * 65.54304 * 21 20 19 24 24 C 1.43674 * 109.11481 * 208.87259 * 23 21 20 25 25 C 1.54552 * 107.47694 * 2.29046 * 24 23 21 26 26 C 1.54034 * 113.09164 * 304.73293 * 21 20 19 27 27 H 1.08999 * 112.90023 * 283.89171 * 26 21 20 28 28 C 1.46536 * 120.99994 * 176.12011 * 18 16 15 29 29 H 0.97001 * 120.00267 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.96430 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.79779 * 179.71835 * 12 11 10 32 32 H 1.08006 * 119.83913 * 180.02562 * 13 12 11 33 33 H 1.07997 * 120.04762 * 180.02562 * 14 13 12 34 34 H 1.09002 * 109.80902 * 242.17343 * 19 18 16 35 35 H 1.08998 * 109.80792 * 3.01264 * 19 18 16 36 36 H 1.09007 * 109.15082 * 293.99799 * 20 19 18 37 37 H 1.08997 * 109.15953 * 174.82508 * 20 19 18 38 38 H 1.09003 * 109.84582 * 121.77377 * 24 23 21 39 39 H 1.09006 * 109.84815 * 242.69780 * 24 23 21 40 40 H 1.08997 * 110.93171 * 140.10140 * 25 24 23 41 41 H 1.08992 * 110.93335 * 263.73786 * 25 24 23 42 42 H 1.09007 * 109.35255 * 115.38556 * 28 18 16 43 43 H 1.08990 * 109.35565 * 355.81298 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0088 -1.2011 0.0005 8 1 1.4688 -2.1365 0.0005 9 8 3.3569 -1.2011 0.0011 10 6 3.9722 -2.4036 0.1094 11 6 3.2251 -3.5737 0.0900 12 6 3.8531 -4.7973 0.2064 13 6 5.2308 -4.8687 0.3376 14 6 5.9890 -3.7179 0.3528 15 6 5.3675 -2.4726 0.2360 16 6 6.1731 -1.2367 0.2521 17 8 5.9109 -0.3505 1.0423 18 7 7.1995 -1.0901 -0.6089 19 6 7.5892 -2.1808 -1.5164 20 6 7.5113 -1.6455 -2.9481 21 6 8.3366 -0.3888 -3.1043 22 1 8.1679 -0.0045 -4.1103 23 8 9.7368 -0.6048 -2.9393 24 6 10.3422 0.5972 -2.4363 25 6 9.2131 1.6302 -2.2202 26 6 7.9550 0.7136 -2.0985 27 1 7.0277 1.2235 -2.3596 28 6 7.9607 0.1606 -0.6697 29 1 -0.4850 0.8400 -0.0004 30 1 2.1509 -3.5262 -0.0113 31 1 3.2673 -5.7045 0.1953 32 1 5.7128 -5.8310 0.4276 33 1 7.0624 -3.7789 0.4549 34 1 8.6082 -2.4985 -1.2957 35 1 6.9061 -3.0218 -1.3977 36 1 6.4721 -1.4234 -3.1908 37 1 7.8835 -2.4056 -3.6349 38 1 10.8420 0.3916 -1.4896 39 1 11.0625 0.9795 -3.1596 40 1 9.3732 2.1957 -1.3022 41 1 9.1274 2.2984 -3.0770 42 1 8.9886 -0.0267 -0.3590 43 1 7.5099 0.8909 0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843977978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:57 Heat of formation + Delta-G solvation = -89.864346 kcal Electronic energy + Delta-G solvation = -27601.153952 eV Core-core repulsion = 23804.504327 eV Total energy + Delta-G solvation = -3796.649625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00166 -41.06082 -39.79859 -38.21356 -36.96791 -34.54155 -34.05075 -32.93845 -32.01669 -30.86405 -29.55081 -27.43689 -26.78702 -24.69895 -24.24257 -23.05303 -22.50224 -21.68397 -20.35952 -19.89813 -18.90472 -18.20869 -17.54161 -17.31331 -16.86532 -16.73585 -16.49272 -15.92270 -15.75901 -15.66993 -15.50800 -15.15387 -14.67456 -14.60814 -14.37405 -14.23492 -14.07390 -13.87738 -13.63869 -13.24407 -13.05669 -12.83139 -12.73166 -12.58429 -12.49825 -12.39602 -12.14657 -12.00653 -11.84338 -11.54820 -11.52219 -10.99286 -10.82231 -10.43967 -9.85837 -9.64016 -9.17212 -8.59165 -6.29094 0.17187 0.60927 1.18952 1.23213 1.48436 1.63737 2.02366 2.22043 2.69729 2.79140 2.90920 3.10935 3.40976 3.48212 3.67902 3.81191 4.01287 4.04047 4.10123 4.12659 4.15604 4.24487 4.30590 4.44961 4.48291 4.56424 4.59465 4.71980 4.77619 4.80526 4.81993 4.88733 4.93057 4.96940 5.05996 5.07412 5.19442 5.29637 5.46731 5.51504 5.61849 5.68244 5.82697 6.03239 6.13654 6.33274 6.76798 7.15752 7.52931 8.51819 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.005359 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.124978 B = 5223.231030 C = 6773.289327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.276 1.276 7 C -0.398 4.398 8 H 0.093 0.907 9 O -0.234 6.234 10 C 0.157 3.843 11 C -0.240 4.240 12 C -0.048 4.048 13 C -0.178 4.178 14 C -0.040 4.040 15 C -0.219 4.219 16 C 0.569 3.431 17 O -0.583 6.583 18 N -0.606 5.606 19 C 0.102 3.898 20 C -0.132 4.132 21 C 0.094 3.906 22 H 0.065 0.935 23 O -0.384 6.384 24 C 0.047 3.953 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.087 0.913 28 C 0.119 3.881 29 H 0.286 0.714 30 H 0.117 0.883 31 H 0.153 0.847 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.550 -5.081 -6.989 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.201 1.201 7 C -0.474 4.474 8 H 0.111 0.889 9 O -0.139 6.139 10 C 0.105 3.895 11 C -0.259 4.259 12 C -0.066 4.066 13 C -0.196 4.196 14 C -0.058 4.058 15 C -0.223 4.223 16 C 0.359 3.641 17 O -0.463 6.463 18 N -0.339 5.339 19 C -0.019 4.019 20 C -0.170 4.170 21 C 0.037 3.963 22 H 0.083 0.917 23 O -0.304 6.304 24 C -0.029 4.029 25 C -0.182 4.182 26 C -0.161 4.161 27 H 0.105 0.895 28 C -0.003 4.003 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.170 0.830 32 H 0.185 0.815 33 H 0.175 0.825 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.421 -4.436 -6.645 22.862 hybrid contribution -0.877 1.269 0.188 1.554 sum 20.544 -3.167 -6.457 21.766 Atomic orbital electron populations 1.69672 1.06333 1.29500 1.49676 1.25015 0.95652 1.01227 0.95566 0.85533 0.78989 0.79054 0.79284 1.18860 1.18797 1.20119 1.20797 0.77835 0.96340 1.52414 0.88938 1.83565 1.21543 1.27514 1.81319 1.19547 0.91419 0.85716 0.92812 1.21319 1.00563 0.92780 1.11266 1.21418 0.95715 0.96270 0.93194 1.21218 0.93067 0.99090 1.06254 1.21231 1.00620 0.89203 0.94749 1.19072 0.90092 0.94876 1.18271 1.18489 0.79240 0.86511 0.79830 1.90740 1.69869 1.44589 1.41093 1.48030 1.31737 1.16275 1.37808 1.22168 1.02381 0.89433 0.87927 1.21598 0.99605 0.98058 0.97729 1.21890 0.81846 0.94749 0.97861 0.91679 1.88320 1.19406 1.36242 1.86383 1.23370 0.95444 0.84009 1.00033 1.23356 0.92384 0.97971 1.04471 1.23250 1.00149 0.97447 0.95226 0.89499 1.21564 0.96302 0.85840 0.96620 0.90443 0.86542 0.82963 0.81467 0.82504 0.88505 0.88076 0.91462 0.87589 0.90387 0.89498 0.88778 0.88939 0.89311 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.33 13.96 21.62 0.30 -55.03 16 2 C 0.03 1.53 5.49 84.85 0.47 1.99 16 3 Si 0.95 49.44 28.62 68.60 1.96 51.40 16 4 H -0.26 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -15.82 7.11 99.48 0.71 -15.11 16 7 C -0.40 -24.07 9.95 67.93 0.68 -23.40 16 8 H 0.09 5.67 5.44 -2.91 -0.02 5.65 16 9 O -0.23 -13.47 7.78 -16.51 -0.13 -13.60 16 10 C 0.16 7.54 6.64 22.91 0.15 7.69 16 11 C -0.24 -10.09 9.16 22.36 0.20 -9.88 16 12 C -0.05 -1.44 10.03 22.30 0.22 -1.22 16 13 C -0.18 -4.43 10.02 22.25 0.22 -4.20 16 14 C -0.04 -1.13 7.41 22.52 0.17 -0.97 16 15 C -0.22 -8.80 4.95 -19.99 -0.10 -8.89 16 16 C 0.57 24.01 6.87 86.70 0.60 24.60 16 17 O -0.58 -30.53 16.18 -0.57 -0.01 -30.54 16 18 N -0.61 -19.22 2.93 -823.35 -2.42 -21.64 16 19 C 0.10 2.38 5.61 86.27 0.48 2.86 16 20 C -0.13 -2.85 5.81 30.01 0.17 -2.67 16 21 C 0.09 1.98 3.01 30.34 0.09 2.07 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 O -0.38 -7.69 11.03 -148.98 -1.64 -9.34 16 24 C 0.05 0.71 7.05 72.51 0.51 1.22 16 25 C -0.14 -2.28 6.35 32.21 0.20 -2.08 16 26 C -0.14 -3.28 3.91 -9.29 -0.04 -3.31 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 C 0.12 3.33 5.47 86.44 0.47 3.80 16 29 H 0.29 15.96 8.31 -92.71 -0.77 15.19 16 30 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 31 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.16 3.31 7.35 -2.91 -0.02 3.29 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.34 4.64 -2.39 -0.01 2.33 16 36 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.04 7.79 -2.39 -0.02 1.02 16 39 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.09 1.35 7.96 -2.39 -0.02 1.33 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 2.05 6.86 -2.38 -0.02 2.03 16 43 H 0.06 2.16 7.01 -2.39 -0.02 2.14 16 Total: -1.00 -78.82 343.68 3.61 -75.21 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.03 Total: 15.93 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 4.51 Total: -12.39 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.11 Total: -76.67 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -1.78 Total: -53.48 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 1.96 Total: 51.40 kcal Total: -78.82 3.61 -75.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843977978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.653 kcal (2) G-P(sol) polarization free energy of solvation -78.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds