Wall clock time and date at job start Tue Mar 31 2020 11:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86795 * 120.00090 * 2 1 4 4 H 1.48508 * 109.47177 * 269.99985 * 3 2 1 5 5 H 1.48501 * 109.47308 * 30.00294 * 3 2 1 6 6 H 1.48504 * 109.47295 * 150.00527 * 3 2 1 7 7 C 1.40122 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.46195 * 120.00294 * 359.97438 * 7 2 1 10 10 O 1.21719 * 120.00185 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00162 * 179.97438 * 9 7 2 12 12 C 1.39075 * 120.00133 * 185.27944 * 11 9 7 13 13 C 1.39268 * 119.93260 * 33.65097 * 12 11 9 14 14 C 1.37601 * 120.07074 * 180.02562 * 13 12 11 15 15 C 1.39832 * 119.93026 * 359.97438 * 14 13 12 16 16 C 1.47465 * 120.06726 * 179.97438 * 15 14 13 17 17 O 1.21505 * 119.99896 * 359.97438 * 16 15 14 18 18 O 1.34752 * 120.00324 * 179.97438 * 16 15 14 19 19 C 1.45192 * 117.00456 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47538 * 180.02562 * 19 18 16 21 21 C 1.52993 * 109.47420 * 180.02562 * 20 19 18 22 22 C 1.53782 * 113.61747 * 85.86177 * 21 20 19 23 23 C 1.54043 * 86.98805 * 140.02012 * 22 21 20 24 24 C 1.53780 * 113.61647 * 183.47219 * 21 20 19 25 25 C 1.39835 * 119.86968 * 0.25049 * 15 14 13 26 26 C 1.37612 * 119.92692 * 359.53579 * 25 15 14 27 27 H 0.97005 * 119.99405 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99648 * 5.28336 * 11 9 7 29 29 H 1.08005 * 119.96488 * 359.97438 * 13 12 11 30 30 H 1.08005 * 120.03492 * 179.97438 * 14 13 12 31 31 H 1.09005 * 109.47017 * 60.00336 * 19 18 16 32 32 H 1.09000 * 109.47216 * 300.00243 * 19 18 16 33 33 H 1.08994 * 109.46752 * 59.99595 * 20 19 18 34 34 H 1.09000 * 109.47000 * 300.00295 * 20 19 18 35 35 H 1.09003 * 112.84804 * 314.66653 * 21 20 19 36 36 H 1.09003 * 113.61723 * 254.61782 * 22 21 20 37 37 H 1.09008 * 113.61175 * 25.51686 * 22 21 20 38 38 H 1.09003 * 113.62206 * 220.02343 * 23 22 21 39 39 H 1.09000 * 113.69197 * 89.12671 * 23 22 21 40 40 H 1.09000 * 113.61107 * 334.48093 * 24 21 20 41 41 H 1.08993 * 113.61843 * 105.30334 * 24 21 20 42 42 H 1.07997 * 120.04344 * 179.75187 * 25 15 14 43 43 H 1.08002 * 119.96649 * 180.21121 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4380 2.6526 0.7001 6 1 3.5381 1.4401 0.6999 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2136 -0.0001 9 6 1.2760 -2.4796 -0.0005 10 8 0.0588 -2.4796 -0.0005 11 7 1.9498 -3.6468 -0.0016 12 6 1.2587 -4.8486 -0.1124 13 6 0.0979 -4.9146 -0.8791 14 6 -0.5883 -6.1021 -0.9903 15 6 -0.1188 -7.2435 -0.3329 16 6 -0.8522 -8.5175 -0.4495 17 8 -1.8658 -8.5761 -1.1169 18 8 -0.3983 -9.6167 0.1841 19 6 -1.1710 -10.8356 0.0252 20 6 -0.5063 -11.9672 0.8117 21 6 -1.3202 -13.2517 0.6437 22 6 -0.9497 -14.0559 -0.6136 23 6 -1.0993 -15.3220 0.2511 24 6 -0.7817 -14.4343 1.4661 25 6 1.0444 -7.1730 0.4400 26 6 1.7287 -5.9836 0.5438 27 1 -0.4849 0.8401 0.0004 28 1 2.9168 -3.6486 0.0750 29 1 -0.2644 -4.0326 -1.3863 30 1 -1.4887 -6.1525 -1.5847 31 1 -1.2145 -11.1032 -1.0306 32 1 -2.1816 -10.6768 0.4017 33 1 -0.4631 -11.6994 1.8673 34 1 0.5044 -12.1261 0.4356 35 1 -2.3922 -13.0917 0.7594 36 1 -1.6873 -13.9815 -1.4127 37 1 0.0693 -13.8811 -0.9592 38 1 -0.3401 -16.0786 0.0527 39 1 -2.1103 -15.7291 0.2603 40 1 0.2831 -14.3628 1.6881 41 1 -1.3829 -14.6644 2.3456 42 1 1.4073 -8.0518 0.9522 43 1 2.6291 -5.9293 1.1378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849634778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:54 Heat of formation + Delta-G solvation = -111.860361 kcal Electronic energy + Delta-G solvation = -24680.116914 eV Core-core repulsion = 20882.513470 eV Total energy + Delta-G solvation = -3797.603444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65491 -40.73596 -39.78890 -38.71244 -37.51100 -35.43060 -34.58107 -32.96542 -31.96007 -31.06923 -28.50280 -26.73645 -26.32259 -24.82858 -23.86198 -22.64904 -22.36101 -21.52605 -20.27649 -19.58183 -18.92204 -18.21138 -17.72326 -17.58675 -17.54752 -16.44898 -16.15448 -15.77368 -15.62965 -15.42962 -15.23400 -14.91882 -14.72244 -14.47790 -14.23819 -13.73999 -13.61493 -13.42476 -13.33395 -13.28059 -13.12505 -12.79534 -12.74425 -12.42714 -12.27001 -12.14969 -12.03806 -11.76448 -11.56471 -11.41018 -11.18012 -11.07043 -11.00003 -10.91547 -10.13137 -9.85642 -8.95554 -8.39871 -6.98022 -0.27912 0.44737 1.38292 1.41023 1.51200 1.57634 1.59348 2.19667 2.35044 2.77628 2.88280 3.52645 3.53796 3.70321 3.75161 3.86819 3.95039 3.98808 4.01699 4.07410 4.21698 4.36484 4.37591 4.45123 4.61501 4.65349 4.71979 4.89125 4.91420 4.96866 5.02038 5.05575 5.11404 5.16267 5.20882 5.23944 5.33749 5.38406 5.40107 5.44441 5.63931 5.67272 5.76796 6.12252 6.23910 6.70611 6.75303 7.25428 8.28859 8.53251 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.049194 B = 0.001876 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.037119 B =14921.178828 C =15249.696254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.029 3.971 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.561 4.561 8 H 0.098 0.902 9 C 0.525 3.475 10 O -0.603 6.603 11 N -0.686 5.686 12 C 0.209 3.791 13 C -0.170 4.170 14 C -0.035 4.035 15 C -0.186 4.186 16 C 0.522 3.478 17 O -0.547 6.547 18 O -0.349 6.349 19 C 0.063 3.937 20 C -0.100 4.100 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.131 4.131 25 C -0.019 4.019 26 C -0.175 4.175 27 H 0.278 0.722 28 H 0.414 0.586 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.171 0.829 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -24.699 2.659 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.596 4.596 8 H 0.116 0.884 9 C 0.333 3.667 10 O -0.489 6.489 11 N -0.329 5.329 12 C 0.109 3.891 13 C -0.191 4.191 14 C -0.054 4.054 15 C -0.189 4.189 16 C 0.370 3.630 17 O -0.439 6.439 18 O -0.265 6.265 19 C -0.010 4.010 20 C -0.137 4.137 21 C -0.131 4.131 22 C -0.182 4.182 23 C -0.179 4.179 24 C -0.169 4.169 25 C -0.037 4.037 26 C -0.196 4.196 27 H 0.088 0.912 28 H 0.251 0.749 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.188 0.812 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.501 -24.560 2.475 24.932 hybrid contribution -0.063 1.063 -0.359 1.123 sum 3.438 -23.497 2.116 23.842 Atomic orbital electron populations 1.70148 1.09634 1.29493 1.34782 1.27026 0.95537 1.05109 0.91096 0.84948 0.78844 0.74684 0.79461 1.18675 1.19933 1.16814 1.21442 0.95224 0.89323 1.53641 0.88421 1.18808 0.87218 0.83816 0.76886 1.90624 1.15681 1.87040 1.55535 1.43778 1.10727 1.03816 1.74582 1.18528 0.92405 0.87193 0.91024 1.21032 0.98321 0.97661 1.02089 1.20982 0.97957 0.90552 0.95905 1.18955 1.00494 0.90573 1.08856 1.21116 0.82111 0.84387 0.75396 1.90793 1.26333 1.86105 1.40680 1.86511 1.54045 1.18912 1.67061 1.23306 0.94942 0.81075 1.01725 1.21554 0.99947 0.91402 1.00792 1.22524 0.99991 0.92536 0.98019 1.23120 1.02083 0.96552 0.96465 1.22860 1.02265 0.96471 0.96336 1.22927 1.01866 0.94849 0.97217 1.21427 0.90906 0.98227 0.93158 1.21184 1.04318 0.91413 1.02711 0.91175 0.74914 0.87550 0.85503 0.91464 0.91708 0.90096 0.89976 0.89040 0.91791 0.89706 0.90886 0.89934 0.89393 0.90949 0.81164 0.81855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.63 11.83 21.85 0.26 -47.38 16 2 C 0.03 1.53 5.50 85.33 0.47 2.00 16 3 Si 1.00 38.59 29.56 68.60 2.03 40.61 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 6 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 7 C -0.56 -29.74 9.54 24.80 0.24 -29.50 16 8 H 0.10 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.53 28.86 7.46 86.31 0.64 29.50 16 10 O -0.60 -38.50 12.69 -4.41 -0.06 -38.56 16 11 N -0.69 -29.22 5.30 -307.52 -1.63 -30.85 16 12 C 0.21 8.29 6.27 38.49 0.24 8.53 16 13 C -0.17 -7.43 8.62 22.37 0.19 -7.24 16 14 C -0.03 -1.33 9.58 22.51 0.22 -1.12 16 15 C -0.19 -6.10 5.88 -20.07 -0.12 -6.22 16 16 C 0.52 16.52 7.89 70.25 0.55 17.07 16 17 O -0.55 -20.17 16.13 19.82 0.32 -19.85 16 18 O -0.35 -8.76 9.46 -56.63 -0.54 -9.30 16 19 C 0.06 1.27 5.47 71.98 0.39 1.66 16 20 C -0.10 -1.37 5.42 30.59 0.17 -1.20 16 21 C -0.11 -1.32 3.64 -10.27 -0.04 -1.35 16 22 C -0.14 -1.64 7.65 31.21 0.24 -1.40 16 23 C -0.14 -1.35 8.09 31.21 0.25 -1.10 16 24 C -0.13 -1.26 7.64 31.12 0.24 -1.02 16 25 C -0.02 -0.50 9.60 22.51 0.22 -0.29 16 26 C -0.18 -5.18 9.94 22.37 0.22 -4.96 16 27 H 0.28 14.80 8.29 -92.70 -0.77 14.03 16 28 H 0.41 14.22 8.79 -92.71 -0.81 13.40 16 29 H 0.11 5.50 6.41 -2.91 -0.02 5.48 16 30 H 0.13 4.80 7.64 -2.91 -0.02 4.78 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.05 7.87 -2.39 -0.02 1.03 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.93 7.92 -2.38 -0.02 0.91 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.17 3.33 7.60 -2.91 -0.02 3.31 16 43 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -73.96 368.14 4.73 -69.24 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.22 Total: 32.73 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 4.13 Total: 3.36 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.37 Total: -78.23 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -0.27 Total: -67.71 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.61 kcal Total: -73.96 4.73 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849634778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.625 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds