Wall clock time and date at job start Tue Mar 31 2020 11:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21273 * 119.99891 * 2 1 4 4 N 1.34771 * 119.99950 * 179.72695 * 2 1 3 5 5 C 1.39257 * 120.00023 * 179.26045 * 4 2 1 6 6 C 1.38848 * 120.16822 * 132.93714 * 5 4 2 7 7 C 1.50693 * 119.96629 * 0.02562 * 6 5 4 8 8 C 1.38023 * 120.07024 * 180.02562 * 6 5 4 9 9 C 1.38574 * 120.42128 * 359.97438 * 8 6 5 10 10 C 1.37774 * 120.34002 * 0.02562 * 9 8 6 11 11 C 1.39754 * 119.91155 * 359.74178 * 10 9 8 12 12 C 1.47381 * 120.20451 * 180.25542 * 11 10 9 13 13 O 1.21513 * 120.00207 * 314.87200 * 12 11 10 14 14 O 1.34755 * 120.00242 * 134.87338 * 12 11 10 15 15 C 1.45193 * 117.00147 * 177.48143 * 14 12 11 16 16 C 1.53003 * 109.47208 * 174.13061 * 15 14 12 17 17 C 1.50700 * 115.55124 * 180.22569 * 16 15 14 18 18 H 1.08001 * 119.99730 * 145.53040 * 17 16 15 19 19 C 1.37871 * 120.00191 * 325.53238 * 17 16 15 20 20 N 1.31513 * 120.00136 * 2.35164 * 19 17 16 21 21 Si 1.86803 * 119.99849 * 182.35190 * 19 17 16 22 22 H 1.48505 * 109.47388 * 89.99961 * 21 19 17 23 23 H 1.48503 * 109.47197 * 209.99915 * 21 19 17 24 24 H 1.48495 * 109.47190 * 329.99829 * 21 19 17 25 25 C 1.53000 * 117.49674 * 34.55998 * 16 15 14 26 26 C 1.52995 * 117.49784 * 325.90193 * 16 15 14 27 27 H 1.08997 * 109.47059 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46506 * 119.99894 * 1 2 3 29 29 H 1.09000 * 109.47002 * 239.99274 * 1 2 3 30 30 H 0.97003 * 120.00604 * 359.26445 * 4 2 1 31 31 H 1.09000 * 109.47520 * 89.99899 * 7 6 5 32 32 H 1.09002 * 109.47622 * 210.00357 * 7 6 5 33 33 H 1.09007 * 109.47141 * 329.99817 * 7 6 5 34 34 H 1.08000 * 119.78909 * 179.97438 * 8 6 5 35 35 H 1.07999 * 119.83269 * 179.97438 * 9 8 6 36 36 H 1.07998 * 120.04860 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47476 * 294.13206 * 15 14 12 38 38 H 1.08998 * 109.47308 * 54.13138 * 15 14 12 39 39 H 0.97001 * 119.99810 * 185.00989 * 20 19 17 40 40 H 1.09005 * 117.50270 * 0.02562 * 25 16 15 41 41 H 1.09001 * 117.49889 * 145.02148 * 25 16 15 42 42 H 1.09000 * 117.49741 * 214.97571 * 26 16 15 43 43 H 1.09000 * 117.50044 * 359.97321 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 3.5734 -1.1673 -0.0100 6 6 4.2810 -1.9752 0.8701 7 6 3.5413 -2.8549 1.8447 8 6 5.6611 -1.9733 0.8533 9 6 6.3509 -1.1684 -0.0393 10 6 5.6661 -0.3601 -0.9201 11 6 4.2685 -0.3546 -0.9185 12 6 3.5294 0.5034 -1.8618 13 8 3.8698 1.6580 -2.0276 14 8 2.4761 0.0074 -2.5404 15 6 1.7610 0.9245 -3.4097 16 6 0.7002 0.1556 -4.2000 17 6 -0.1238 0.9805 -5.1548 18 1 -0.4574 0.5528 -6.0887 19 6 -0.4519 2.2811 -4.8361 20 7 -0.0071 2.8170 -3.7205 21 14 -1.5282 3.2822 -5.9889 22 1 -2.9549 3.0947 -5.6219 23 1 -1.1725 4.7195 -5.8751 24 1 -1.3128 2.8282 -7.3863 25 6 0.0083 -1.0155 -3.4996 26 6 1.0281 -1.2816 -4.6096 27 1 -0.3633 1.0276 0.0005 28 1 -0.3632 -0.5139 -0.8901 29 1 -0.3633 -0.5139 0.8899 30 1 1.6961 -2.0072 0.0203 31 1 3.3555 -3.8271 1.3880 32 1 4.1420 -2.9852 2.7449 33 1 2.5913 -2.3888 2.1062 34 1 6.2069 -2.6032 1.5401 35 1 7.4308 -1.1742 -0.0440 36 1 6.2084 0.2650 -1.6140 37 1 1.2784 1.6943 -2.8076 38 1 2.4624 1.3909 -4.1015 39 1 -0.2962 3.7057 -3.4604 40 1 0.3084 -1.2379 -2.4755 41 1 -1.0429 -1.1896 -3.7297 42 1 0.6475 -1.6306 -5.5695 43 1 1.9997 -1.6792 -4.3164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849646720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:13 Heat of formation + Delta-G solvation = -65.054657 kcal Electronic energy + Delta-G solvation = -27963.873250 eV Core-core repulsion = 24168.299454 eV Total energy + Delta-G solvation = -3795.573796 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84976 -38.85995 -38.44497 -36.67676 -34.90397 -34.57634 -32.75725 -32.27670 -30.84707 -28.86198 -26.87558 -26.58161 -25.52550 -23.82397 -21.91846 -21.21868 -20.66351 -19.87801 -18.90776 -17.78751 -17.18791 -16.74266 -16.34455 -15.96586 -15.59018 -14.93457 -14.79464 -14.50074 -14.41291 -13.92485 -13.75682 -13.60910 -13.39813 -13.04227 -12.66119 -12.41587 -12.30168 -12.06486 -11.93842 -11.82792 -11.61312 -11.42065 -11.21889 -11.07149 -10.78066 -10.50184 -10.22973 -10.12922 -9.88172 -9.72312 -9.64097 -9.36966 -8.90076 -8.78568 -8.76987 -8.21644 -8.12924 -6.06136 -4.22232 0.98558 1.22485 2.76113 3.21648 3.23241 3.24160 3.31781 3.34542 3.58672 3.77754 4.29926 4.67051 4.76658 4.93732 4.98571 5.09012 5.15608 5.33381 5.41285 5.45215 5.47848 5.53662 5.60195 5.69679 5.75561 5.95969 6.09852 6.16732 6.25764 6.28498 6.39478 6.44070 6.47546 6.51898 6.72043 6.82907 6.92081 6.93562 7.27592 7.37553 7.41534 7.47474 7.70827 7.98753 8.28278 8.34646 8.72548 8.79420 9.41318 10.87501 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.004347 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.036950 B = 6439.955769 C = 6710.573361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.520 3.480 3 O -0.513 6.513 4 N -0.676 5.676 5 C 0.191 3.809 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.088 4.088 9 C -0.135 4.135 10 C -0.063 4.063 11 C -0.098 4.098 12 C 0.515 3.485 13 O -0.500 6.500 14 O -0.368 6.368 15 C 0.100 3.900 16 C 0.052 3.948 17 C -0.488 4.488 18 H 0.068 0.932 19 C 0.067 3.933 20 N -0.880 5.880 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.200 4.200 26 C -0.206 4.206 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.412 0.588 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.046 0.954 39 H 0.267 0.733 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 -12.654 11.641 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.310 3.690 3 O -0.387 6.387 4 N -0.324 5.324 5 C 0.096 3.904 6 C -0.118 4.118 7 C -0.167 4.167 8 C -0.106 4.106 9 C -0.153 4.153 10 C -0.082 4.082 11 C -0.101 4.101 12 C 0.358 3.642 13 O -0.388 6.388 14 O -0.285 6.285 15 C 0.028 3.972 16 C 0.051 3.949 17 C -0.525 4.525 18 H 0.086 0.914 19 C -0.136 4.136 20 N -0.517 5.517 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.238 4.238 26 C -0.243 4.243 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.549 -11.273 11.610 17.457 hybrid contribution -0.764 0.184 -0.694 1.049 sum 5.785 -11.089 10.916 16.600 Atomic orbital electron populations 1.21982 0.90197 1.06634 1.04340 1.21066 0.91204 0.82835 0.73872 1.90814 1.70204 1.30842 1.46815 1.43385 1.03945 1.10152 1.74874 1.17412 0.83430 0.95775 0.93795 1.19727 0.94023 1.00752 0.97330 1.20710 1.00255 0.98353 0.97425 1.20982 0.92804 0.98411 0.98435 1.20985 1.00104 0.97524 0.96717 1.21073 0.91597 0.97203 0.98307 1.19342 0.93694 1.00337 0.96743 1.20409 0.79291 0.85831 0.78645 1.90795 1.67135 1.17939 1.62971 1.86419 1.40585 1.46279 1.55264 1.23605 0.90891 0.90664 0.92001 1.19099 0.94305 0.85603 0.95868 1.20547 1.31962 0.96228 1.03736 0.91431 1.25092 0.95651 0.97243 0.95640 1.69598 1.42446 1.16854 1.22817 0.86379 0.80299 0.79262 0.80928 1.20405 1.20946 1.19703 1.22988 0.96237 1.09638 0.94953 1.22837 0.98780 1.04503 0.98187 0.88270 0.87884 0.89919 0.75140 0.90977 0.91172 0.91494 0.85376 0.85205 0.84908 0.84734 0.93534 0.92170 0.91309 0.90707 0.90920 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.32 36.01 0.37 -2.09 16 2 C 0.52 9.07 5.93 -10.98 -0.07 9.00 16 3 O -0.51 -11.60 13.80 -19.33 -0.27 -11.86 16 4 N -0.68 -9.58 3.98 -9.68 -0.04 -9.62 16 5 C 0.19 2.91 5.98 -83.48 -0.50 2.41 16 6 C -0.12 -1.35 5.89 -104.48 -0.62 -1.97 16 7 C -0.11 -0.89 9.58 36.00 0.35 -0.54 16 8 C -0.09 -0.91 9.68 -39.54 -0.38 -1.30 16 9 C -0.13 -1.54 10.02 -39.63 -0.40 -1.94 16 10 C -0.06 -0.96 9.69 -39.18 -0.38 -1.34 16 11 C -0.10 -1.78 5.39 -104.83 -0.57 -2.35 16 12 C 0.52 11.77 4.34 34.45 0.15 11.92 16 13 O -0.50 -13.18 16.48 -24.68 -0.41 -13.58 16 14 O -0.37 -8.45 6.53 -45.78 -0.30 -8.75 16 15 C 0.10 2.61 4.80 37.16 0.18 2.79 16 16 C 0.05 1.30 2.46 -155.66 -0.38 0.92 16 17 C -0.49 -13.16 9.07 -34.44 -0.31 -13.48 16 18 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 19 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 20 N -0.88 -24.67 10.20 55.43 0.57 -24.11 16 21 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.20 -4.32 9.50 -26.70 -0.25 -4.58 16 26 C -0.21 -4.53 9.64 -26.70 -0.26 -4.78 16 27 H 0.10 1.59 8.12 -51.93 -0.42 1.17 16 28 H 0.10 1.51 6.04 -51.93 -0.31 1.20 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.41 4.30 8.43 -40.82 -0.34 3.96 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.07 0.54 7.38 -51.92 -0.38 0.15 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.14 3.91 5.55 -51.93 -0.29 3.62 16 38 H 0.05 1.31 7.98 -51.93 -0.41 0.90 16 39 H 0.27 7.21 8.32 -40.82 -0.34 6.87 16 40 H 0.07 1.35 5.75 -51.93 -0.30 1.05 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.07 1.53 7.65 -51.93 -0.40 1.13 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -34.28 357.36 -9.03 -43.31 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.79 Total: 9.05 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.16 Total: -5.61 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.53 Total: -33.73 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.97 Total: -34.20 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.28 -9.03 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849646720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.749 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds