Wall clock time and date at job start Tue Mar 31 2020 11:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21273 * 119.99891 * 2 1 4 4 N 1.34771 * 119.99950 * 179.72695 * 2 1 3 5 5 C 1.39257 * 120.00023 * 179.26045 * 4 2 1 6 6 C 1.38848 * 120.16822 * 132.93714 * 5 4 2 7 7 C 1.50693 * 119.96629 * 0.02562 * 6 5 4 8 8 C 1.38023 * 120.07024 * 180.02562 * 6 5 4 9 9 C 1.38574 * 120.42128 * 359.97438 * 8 6 5 10 10 C 1.37774 * 120.34002 * 0.02562 * 9 8 6 11 11 C 1.39754 * 119.91155 * 359.74178 * 10 9 8 12 12 C 1.47381 * 120.20451 * 180.25542 * 11 10 9 13 13 O 1.21513 * 120.00207 * 314.87200 * 12 11 10 14 14 O 1.34755 * 120.00242 * 134.87338 * 12 11 10 15 15 C 1.45193 * 117.00147 * 177.48143 * 14 12 11 16 16 C 1.53003 * 109.47208 * 174.13061 * 15 14 12 17 17 C 1.50700 * 115.55124 * 180.22569 * 16 15 14 18 18 H 1.08001 * 119.99730 * 145.53040 * 17 16 15 19 19 C 1.37871 * 120.00191 * 325.53238 * 17 16 15 20 20 N 1.31513 * 120.00136 * 2.35164 * 19 17 16 21 21 Si 1.86803 * 119.99849 * 182.35190 * 19 17 16 22 22 H 1.48505 * 109.47388 * 89.99961 * 21 19 17 23 23 H 1.48503 * 109.47197 * 209.99915 * 21 19 17 24 24 H 1.48495 * 109.47190 * 329.99829 * 21 19 17 25 25 C 1.53000 * 117.49674 * 34.55998 * 16 15 14 26 26 C 1.52995 * 117.49784 * 325.90193 * 16 15 14 27 27 H 1.08997 * 109.47059 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46506 * 119.99894 * 1 2 3 29 29 H 1.09000 * 109.47002 * 239.99274 * 1 2 3 30 30 H 0.97003 * 120.00604 * 359.26445 * 4 2 1 31 31 H 1.09000 * 109.47520 * 89.99899 * 7 6 5 32 32 H 1.09002 * 109.47622 * 210.00357 * 7 6 5 33 33 H 1.09007 * 109.47141 * 329.99817 * 7 6 5 34 34 H 1.08000 * 119.78909 * 179.97438 * 8 6 5 35 35 H 1.07999 * 119.83269 * 179.97438 * 9 8 6 36 36 H 1.07998 * 120.04860 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47476 * 294.13206 * 15 14 12 38 38 H 1.08998 * 109.47308 * 54.13138 * 15 14 12 39 39 H 0.97001 * 119.99810 * 185.00989 * 20 19 17 40 40 H 1.09005 * 117.50270 * 0.02562 * 25 16 15 41 41 H 1.09001 * 117.49889 * 145.02148 * 25 16 15 42 42 H 1.09000 * 117.49741 * 214.97571 * 26 16 15 43 43 H 1.09000 * 117.50044 * 359.97321 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 3.5734 -1.1673 -0.0100 6 6 4.2810 -1.9752 0.8701 7 6 3.5413 -2.8549 1.8447 8 6 5.6611 -1.9733 0.8533 9 6 6.3509 -1.1684 -0.0393 10 6 5.6661 -0.3601 -0.9201 11 6 4.2685 -0.3546 -0.9185 12 6 3.5294 0.5034 -1.8618 13 8 3.8698 1.6580 -2.0276 14 8 2.4761 0.0074 -2.5404 15 6 1.7610 0.9245 -3.4097 16 6 0.7002 0.1556 -4.2000 17 6 -0.1238 0.9805 -5.1548 18 1 -0.4574 0.5528 -6.0887 19 6 -0.4519 2.2811 -4.8361 20 7 -0.0071 2.8170 -3.7205 21 14 -1.5282 3.2822 -5.9889 22 1 -2.9549 3.0947 -5.6219 23 1 -1.1725 4.7195 -5.8751 24 1 -1.3128 2.8282 -7.3863 25 6 0.0083 -1.0155 -3.4996 26 6 1.0281 -1.2816 -4.6096 27 1 -0.3633 1.0276 0.0005 28 1 -0.3632 -0.5139 -0.8901 29 1 -0.3633 -0.5139 0.8899 30 1 1.6961 -2.0072 0.0203 31 1 3.3555 -3.8271 1.3880 32 1 4.1420 -2.9852 2.7449 33 1 2.5913 -2.3888 2.1062 34 1 6.2069 -2.6032 1.5401 35 1 7.4308 -1.1742 -0.0440 36 1 6.2084 0.2650 -1.6140 37 1 1.2784 1.6943 -2.8076 38 1 2.4624 1.3909 -4.1015 39 1 -0.2962 3.7057 -3.4604 40 1 0.3084 -1.2379 -2.4755 41 1 -1.0429 -1.1896 -3.7297 42 1 0.6475 -1.6306 -5.5695 43 1 1.9997 -1.6792 -4.3164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849646720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:12 Heat of formation + Delta-G solvation = -85.177065 kcal Electronic energy + Delta-G solvation = -27964.745824 eV Core-core repulsion = 24168.299454 eV Total energy + Delta-G solvation = -3796.446369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19508 -40.57242 -39.66417 -38.54535 -36.67755 -35.93205 -34.31709 -33.75710 -32.04862 -30.01247 -28.50565 -27.70403 -27.53020 -25.22575 -23.12079 -22.98083 -21.92837 -21.37177 -20.82762 -19.05571 -18.65907 -18.25496 -18.09869 -17.52558 -17.26148 -16.66562 -16.17704 -15.97521 -15.67327 -15.49112 -15.06726 -14.77095 -14.67992 -14.49774 -14.21773 -13.66760 -13.55722 -13.37787 -13.21851 -13.17852 -13.01317 -12.83553 -12.69950 -12.65572 -12.36464 -12.33523 -11.99451 -11.79944 -11.63347 -11.36599 -11.31015 -11.04592 -10.87437 -10.72883 -10.10445 -9.82727 -9.30462 -8.09867 -6.33648 -0.19108 0.21137 1.39105 1.40528 1.42091 1.52490 1.70823 1.90543 2.09387 2.36643 2.65391 2.94904 3.54109 3.66869 3.76031 3.87922 4.05149 4.24290 4.25460 4.29084 4.37889 4.40947 4.48171 4.54739 4.58416 4.65029 4.84620 4.86083 4.90470 4.93195 5.03611 5.16030 5.17019 5.25178 5.28814 5.32949 5.39537 5.45582 5.49869 5.58390 5.74089 5.88227 5.92333 6.25572 6.35388 6.69527 6.89376 7.12803 7.32448 8.81970 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.004347 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.036950 B = 6439.955769 C = 6710.573361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.512 3.488 3 O -0.575 6.575 4 N -0.658 5.658 5 C 0.171 3.829 6 C -0.106 4.106 7 C -0.110 4.110 8 C -0.071 4.071 9 C -0.121 4.121 10 C -0.084 4.084 11 C -0.142 4.142 12 C 0.513 3.487 13 O -0.554 6.554 14 O -0.357 6.357 15 C 0.123 3.877 16 C 0.007 3.993 17 C -0.505 4.505 18 H 0.068 0.932 19 C 0.018 3.982 20 N -0.910 5.910 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.265 1.265 25 C -0.174 4.174 26 C -0.187 4.187 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.134 0.866 30 H 0.431 0.569 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.003 0.997 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -16.590 13.620 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.304 3.696 3 O -0.454 6.454 4 N -0.307 5.307 5 C 0.076 3.924 6 C -0.108 4.108 7 C -0.167 4.167 8 C -0.089 4.089 9 C -0.139 4.139 10 C -0.103 4.103 11 C -0.145 4.145 12 C 0.360 3.640 13 O -0.446 6.446 14 O -0.273 6.273 15 C 0.050 3.950 16 C 0.006 3.994 17 C -0.543 4.543 18 H 0.086 0.914 19 C -0.181 4.181 20 N -0.549 5.549 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.215 1.215 24 H -0.190 1.190 25 C -0.211 4.211 26 C -0.225 4.225 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.153 0.847 30 H 0.271 0.729 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.195 0.805 35 H 0.185 0.815 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.737 -15.306 13.590 21.549 hybrid contribution -0.672 1.294 -1.212 1.896 sum 6.065 -14.012 12.378 19.656 Atomic orbital electron populations 1.21964 0.88067 1.05742 1.06628 1.21646 0.92401 0.82770 0.72802 1.90798 1.71484 1.33218 1.49935 1.43203 1.03968 1.10052 1.73453 1.17681 0.83731 0.96491 0.94539 1.20215 0.94849 0.99389 0.96325 1.20842 1.00146 0.98325 0.97340 1.21606 0.92449 0.97237 0.97650 1.21415 1.01892 0.95642 0.94938 1.21211 0.90582 0.98669 0.99850 1.19355 0.94809 1.02404 0.97976 1.21434 0.78471 0.85965 0.78146 1.90741 1.68471 1.20458 1.64946 1.86409 1.40974 1.45053 1.54895 1.22996 0.90149 0.90893 0.90978 1.19153 0.95482 0.86996 0.97733 1.20860 1.32243 0.97008 1.04154 0.91352 1.25894 0.96974 0.98296 0.96970 1.69812 1.43585 1.16884 1.24624 0.85379 0.79019 0.77183 0.79113 1.19045 1.21483 1.18981 1.22976 0.96589 1.05677 0.95869 1.22830 0.99302 1.01378 0.98950 0.90839 0.88068 0.84747 0.72874 0.88710 0.88774 0.91596 0.80505 0.81493 0.86070 0.87896 0.97811 0.92660 0.89420 0.89821 0.89850 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.67 10.32 71.24 0.74 -3.93 16 2 C 0.51 18.22 5.93 87.66 0.52 18.73 16 3 O -0.58 -27.74 13.80 20.80 0.29 -27.45 16 4 N -0.66 -17.97 3.98 -302.93 -1.20 -19.17 16 5 C 0.17 5.01 5.98 38.62 0.23 5.24 16 6 C -0.11 -2.05 5.89 -19.77 -0.12 -2.17 16 7 C -0.11 -1.18 9.58 71.23 0.68 -0.50 16 8 C -0.07 -1.12 9.68 22.30 0.22 -0.91 16 9 C -0.12 -2.38 10.02 22.24 0.22 -2.16 16 10 C -0.08 -2.58 9.69 22.53 0.22 -2.37 16 11 C -0.14 -5.36 5.39 -20.00 -0.11 -5.47 16 12 C 0.51 25.21 4.34 70.23 0.30 25.51 16 13 O -0.55 -32.16 16.48 24.96 0.41 -31.75 16 14 O -0.36 -17.32 6.53 -51.75 -0.34 -17.66 16 15 C 0.12 6.88 4.80 71.98 0.35 7.22 16 16 C 0.01 0.35 2.46 -52.93 -0.13 0.22 16 17 C -0.51 -27.99 9.07 25.60 0.23 -27.76 16 18 H 0.07 3.67 7.81 -2.91 -0.02 3.64 16 19 C 0.02 1.00 5.39 84.65 0.46 1.46 16 20 N -0.91 -54.08 10.20 21.44 0.22 -53.86 16 21 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C -0.17 -7.34 9.50 30.62 0.29 -7.05 16 26 C -0.19 -8.13 9.64 30.62 0.30 -7.84 16 27 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 28 H 0.10 2.89 6.04 -2.38 -0.01 2.88 16 29 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.43 7.90 8.43 -92.71 -0.78 7.11 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.07 0.76 7.38 -2.38 -0.02 0.75 16 34 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.10 6.50 5.55 -2.39 -0.01 6.49 16 38 H 0.00 0.21 7.98 -2.39 -0.02 0.19 16 39 H 0.26 15.09 8.32 -92.71 -0.77 14.32 16 40 H 0.09 3.33 5.75 -2.38 -0.01 3.32 16 41 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.08 3.26 7.65 -2.39 -0.02 3.25 16 Total: -1.00 -84.21 357.36 6.06 -78.15 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.26 Total: 27.67 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.40 Total: -1.76 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.99 Total: -73.03 kcal Atomic # 8 Polarization: -77.22 SS G_CDS: 0.36 Total: -76.86 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -84.21 6.06 -78.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849646720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.029 kcal (2) G-P(sol) polarization free energy of solvation -84.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds