Wall clock time and date at job start Tue Mar 31 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38261 * 120.00080 * 2 1 4 4 C 1.38209 * 119.99949 * 180.25097 * 3 2 1 5 5 C 1.38254 * 119.99866 * 359.76958 * 4 3 2 6 6 C 1.38206 * 120.00177 * 0.02562 * 5 4 3 7 7 C 1.38216 * 120.00163 * 179.78523 * 2 1 3 8 8 C 1.50697 * 119.99793 * 0.02562 * 7 2 1 9 9 H 1.08999 * 115.55132 * 334.05432 * 8 7 2 10 10 C 1.53075 * 117.49384 * 188.32513 * 8 7 2 11 11 C 1.53003 * 117.49804 * 119.72336 * 8 7 2 12 12 H 1.08997 * 117.49826 * 359.97438 * 11 8 7 13 13 C 1.50706 * 117.49838 * 214.97624 * 11 8 7 14 14 O 1.20824 * 120.00104 * 0.09181 * 13 11 8 15 15 O 1.34230 * 119.99717 * 180.08625 * 13 11 8 16 16 C 1.45199 * 116.99614 * 180.02562 * 15 13 11 17 17 C 1.50703 * 109.46928 * 180.02562 * 16 15 13 18 18 O 1.21278 * 119.99985 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99944 * 180.02562 * 17 16 15 20 20 C 1.46499 * 119.99872 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.46992 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00129 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99861 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99913 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99734 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47094 * 90.00289 * 25 23 21 27 27 H 1.48505 * 109.47195 * 210.00171 * 25 23 21 28 28 H 1.48493 * 109.47449 * 330.00136 * 25 23 21 29 29 H 1.09002 * 109.47096 * 270.21083 * 1 2 3 30 30 H 1.09001 * 109.46934 * 30.21329 * 1 2 3 31 31 H 1.09001 * 109.47118 * 150.21093 * 1 2 3 32 32 H 1.07997 * 119.99579 * 0.04341 * 3 2 1 33 33 H 1.07997 * 119.99686 * 179.78909 * 4 3 2 34 34 H 1.08006 * 119.99844 * 179.97438 * 5 4 3 35 35 H 1.08011 * 119.99780 * 179.97438 * 6 5 4 36 36 H 1.08998 * 117.51090 * 145.03988 * 10 8 7 37 37 H 1.08993 * 117.49322 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.47177 * 60.00180 * 16 15 13 39 39 H 1.09001 * 109.47399 * 300.00009 * 16 15 13 40 40 H 0.97000 * 119.99708 * 359.97438 * 19 17 16 41 41 H 1.09002 * 109.47391 * 59.99686 * 20 19 17 42 42 H 1.09001 * 109.46813 * 299.99742 * 20 19 17 43 43 H 0.97002 * 119.99768 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0052 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0014 7 6 2.1982 -1.1970 0.0045 8 6 1.4447 -2.5020 0.0088 9 1 0.4436 -2.4655 0.4385 10 6 2.2548 -3.7851 0.2102 11 6 1.6747 -3.4544 -1.1664 12 1 2.3706 -3.1368 -1.9428 13 6 0.4999 -4.2707 -1.6407 14 8 -0.5733 -4.1574 -1.0973 15 8 0.6459 -5.1235 -2.6670 16 6 -0.5282 -5.8764 -3.0704 17 6 -0.1755 -6.7751 -4.2276 18 8 0.9543 -6.7808 -4.6685 19 7 -1.1155 -7.5724 -4.7726 20 6 -0.7725 -8.4464 -5.8971 21 6 -1.9911 -9.2278 -6.3160 22 1 -2.9276 -9.0871 -5.7967 23 6 -1.9108 -10.1216 -7.3628 24 7 -0.7705 -10.2925 -7.9953 25 14 -3.4215 -11.0896 -7.8824 26 1 -4.1663 -10.3273 -8.9164 27 1 -3.0019 -12.4004 -8.4401 28 1 -4.2973 -11.3107 -6.7038 29 1 -0.3633 0.0038 1.0277 30 1 -0.3633 0.8881 -0.5172 31 1 -0.3633 -0.8919 -0.5106 32 1 1.6583 2.1326 0.0007 33 1 4.1204 2.1326 -0.0087 34 1 5.3517 0.0000 -0.0102 35 1 4.1207 -2.1323 -0.0021 36 1 1.7868 -4.5930 0.7727 37 1 3.3323 -3.6847 0.3400 38 1 -1.3161 -5.1865 -3.3727 39 1 -0.8768 -6.4819 -2.2338 40 1 -2.0191 -7.5681 -4.4197 41 1 0.0148 -9.1367 -5.5939 42 1 -0.4229 -7.8416 -6.7338 43 1 -0.7139 -10.9216 -8.7315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850044208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:19 Heat of formation + Delta-G solvation = -99.415225 kcal Electronic energy + Delta-G solvation = -24639.493857 eV Core-core repulsion = 20842.430075 eV Total energy + Delta-G solvation = -3797.063782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.98264 -40.80994 -40.28095 -38.17393 -37.08386 -36.20203 -34.43281 -33.73284 -31.65184 -30.87319 -28.70948 -27.79543 -26.03267 -24.92052 -24.47659 -22.33762 -21.84806 -21.67130 -20.92601 -19.28901 -19.06281 -18.01580 -17.82679 -17.57498 -17.11743 -16.95817 -16.30712 -16.22676 -15.87800 -15.79474 -15.16342 -14.82060 -14.69892 -14.47652 -14.28078 -14.01527 -13.91231 -13.69551 -13.43542 -13.17913 -13.07217 -12.94888 -12.88369 -12.72526 -12.23819 -12.14079 -11.97721 -11.95439 -11.74612 -11.63153 -11.51019 -11.47182 -10.94167 -10.82800 -9.95264 -9.67652 -9.42054 -8.30431 -6.47189 0.31409 0.49354 0.93581 1.20087 1.44255 1.45849 1.52530 1.57401 2.32071 2.51270 2.57898 3.00897 3.04777 3.45767 3.53049 3.64062 3.72066 3.87850 3.96506 4.02175 4.02360 4.07895 4.18241 4.24076 4.45368 4.63430 4.69395 4.76679 4.79319 4.86152 4.96695 5.04455 5.06646 5.17002 5.20359 5.21043 5.31153 5.40204 5.60095 5.61526 5.64355 5.73759 5.80864 6.12747 6.52531 6.61712 6.76242 7.19011 7.33828 8.81663 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032089 B = 0.001870 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.355561 B =14971.557449 C =15240.906043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.121 4.121 7 C -0.073 4.073 8 C -0.074 4.074 9 H 0.124 0.876 10 C -0.123 4.123 11 C -0.168 4.168 12 H 0.143 0.857 13 C 0.494 3.506 14 O -0.525 6.525 15 O -0.345 6.345 16 C 0.060 3.940 17 C 0.499 3.501 18 O -0.584 6.584 19 N -0.698 5.698 20 C 0.266 3.734 21 C -0.558 4.558 22 H 0.086 0.914 23 C 0.004 3.996 24 N -0.930 5.930 25 Si 0.986 3.014 26 H -0.271 1.271 27 H -0.284 1.284 28 H -0.255 1.255 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.413 0.587 41 H -0.007 1.007 42 H -0.008 1.008 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 22.162 21.027 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.138 4.138 7 C -0.073 4.073 8 C -0.092 4.092 9 H 0.141 0.859 10 C -0.160 4.160 11 C -0.187 4.187 12 H 0.161 0.839 13 C 0.339 3.661 14 O -0.414 6.414 15 O -0.260 6.260 16 C -0.017 4.017 17 C 0.285 3.715 18 O -0.464 6.464 19 N -0.350 5.350 20 C 0.144 3.856 21 C -0.595 4.595 22 H 0.104 0.896 23 C -0.196 4.196 24 N -0.568 5.568 25 Si 0.809 3.191 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.179 1.179 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.249 0.751 41 H 0.011 0.989 42 H 0.010 0.990 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.278 22.053 20.700 30.703 hybrid contribution -0.912 -0.754 -0.733 1.392 sum 4.366 21.299 19.967 29.519 Atomic orbital electron populations 1.20871 0.90674 1.03061 1.02980 1.19987 0.96777 0.92794 0.99306 1.21294 0.94837 0.97739 1.00932 1.21486 0.94346 0.99114 0.99117 1.21425 1.01068 0.92235 1.00232 1.21317 0.93240 0.99546 0.99746 1.19006 0.93588 0.92278 1.02469 1.21168 1.01186 0.88802 0.98047 0.85863 1.23440 1.02298 0.97992 0.92253 1.21925 0.98237 1.03137 0.95378 0.83895 1.23109 0.89678 0.77042 0.76305 1.90640 1.28980 1.65542 1.56287 1.86555 1.39534 1.51348 1.48583 1.22767 0.87006 0.95123 0.96822 1.20687 0.85203 0.81177 0.84422 1.90687 1.22707 1.68766 1.64267 1.46043 1.13440 1.40863 1.34626 1.18638 0.96161 0.87702 0.83122 1.21612 0.96524 1.23816 1.17594 0.89563 1.26064 0.99963 0.97790 0.95774 1.70132 1.27489 1.36520 1.22655 0.85135 0.77880 0.77181 0.78891 1.19660 1.20989 1.17915 0.90206 0.90569 0.92176 0.84494 0.84085 0.84073 0.84250 0.86928 0.84437 0.85864 0.85665 0.75093 0.98913 0.98993 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.33 71.24 0.66 -1.05 16 2 C -0.09 -1.45 5.88 -19.86 -0.12 -1.57 16 3 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 4 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 5 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 6 C -0.12 -1.72 9.30 22.26 0.21 -1.51 16 7 C -0.07 -1.22 5.61 -19.87 -0.11 -1.33 16 8 C -0.07 -1.26 4.66 -11.51 -0.05 -1.31 16 9 H 0.12 2.27 6.44 -2.39 -0.02 2.26 16 10 C -0.12 -1.77 9.57 30.62 0.29 -1.47 16 11 C -0.17 -3.33 5.93 -11.54 -0.07 -3.40 16 12 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 13 C 0.49 13.04 7.74 71.24 0.55 13.60 16 14 O -0.52 -14.98 16.01 21.97 0.35 -14.63 16 15 O -0.34 -10.86 9.76 -45.07 -0.44 -11.30 16 16 C 0.06 1.75 5.94 71.24 0.42 2.17 16 17 C 0.50 20.26 7.91 87.66 0.69 20.95 16 18 O -0.58 -29.75 16.50 15.78 0.26 -29.49 16 19 N -0.70 -29.00 5.55 -466.78 -2.59 -31.59 16 20 C 0.27 14.43 5.43 85.63 0.46 14.89 16 21 C -0.56 -29.88 9.28 25.60 0.24 -29.64 16 22 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 23 C 0.00 0.21 5.46 84.66 0.46 0.68 16 24 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 25 Si 0.99 41.87 29.54 68.60 2.03 43.89 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 28 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.06 1.02 6.65 -2.39 -0.02 1.01 16 32 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.14 1.46 6.02 -2.91 -0.02 1.44 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.14 1.32 6.18 -2.39 -0.01 1.31 16 38 H 0.12 3.02 8.13 -2.39 -0.02 3.00 16 39 H 0.13 3.01 8.13 -2.39 -0.02 2.99 16 40 H 0.41 13.75 8.32 -92.71 -0.77 12.98 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -75.23 372.54 4.47 -70.76 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.27 Total: 21.02 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.31 Total: 6.62 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.30 Total: -86.87 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: 0.17 Total: -55.42 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -75.23 4.47 -70.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850044208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.656 kcal (2) G-P(sol) polarization free energy of solvation -75.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds