Wall clock time and date at job start Tue Mar 31 2020 11:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 115.56413 * 2 1 4 4 C 1.53009 * 117.49667 * 214.31310 * 2 1 3 5 5 C 1.53004 * 117.50010 * 145.69101 * 2 1 3 6 6 C 1.50693 * 117.49900 * 214.97677 * 5 2 1 7 7 O 1.20826 * 120.00312 * 359.97438 * 6 5 2 8 8 O 1.34229 * 120.00040 * 179.71016 * 6 5 2 9 9 C 1.45202 * 117.00450 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47257 * 179.97438 * 9 8 6 11 11 O 1.21294 * 120.00119 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99854 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00022 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99768 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00073 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99733 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99983 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46868 * 90.00436 * 17 15 13 19 19 H 1.48495 * 109.47153 * 210.00284 * 17 15 13 20 20 H 1.48494 * 109.47237 * 330.00533 * 17 15 13 21 21 C 1.50698 * 117.51440 * 0.02562 * 5 2 1 22 22 C 1.38231 * 120.00107 * 279.81135 * 21 5 2 23 23 C 1.38235 * 119.99864 * 179.76975 * 22 21 5 24 24 C 1.38240 * 119.99933 * 0.50406 * 23 22 21 25 25 C 1.38229 * 120.00137 * 359.74728 * 24 23 22 26 26 C 1.38236 * 119.99890 * 0.02562 * 25 24 23 27 27 H 1.09005 * 109.47037 * 279.72347 * 1 2 3 28 28 H 1.09005 * 109.47128 * 39.71211 * 1 2 3 29 29 H 1.08999 * 109.47571 * 159.72137 * 1 2 3 30 30 H 1.08998 * 109.46874 * 205.68776 * 3 2 1 31 31 H 1.08999 * 109.46938 * 325.69083 * 3 2 1 32 32 H 1.08996 * 109.46872 * 85.69008 * 3 2 1 33 33 H 1.08999 * 117.49617 * 145.02433 * 4 2 1 34 34 H 1.08993 * 117.51784 * 359.97438 * 4 2 1 35 35 H 1.08990 * 109.46863 * 300.00196 * 9 8 6 36 36 H 1.09006 * 109.46397 * 59.99855 * 9 8 6 37 37 H 0.96999 * 120.00223 * 0.02562 * 12 10 9 38 38 H 0.97001 * 119.99492 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.00358 * 359.97438 * 22 21 5 40 40 H 1.08002 * 120.00246 * 180.23201 * 23 22 21 41 41 H 1.08010 * 119.99710 * 179.72711 * 24 23 22 42 42 H 1.07998 * 120.00282 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.99978 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1210 0.7650 6 6 3.5292 -0.7812 1.4607 7 8 3.9704 0.3421 1.4010 8 8 4.1880 -1.7250 2.1513 9 6 5.4263 -1.3264 2.7964 10 6 6.0195 -2.5084 3.5188 11 8 5.4546 -3.5814 3.4922 12 7 7.1784 -2.3734 4.1936 13 6 7.7184 -3.4489 4.8504 14 1 7.2150 -4.4042 4.8274 15 6 8.9129 -3.3096 5.5465 16 7 9.4307 -4.3406 6.1756 17 14 9.7833 -1.6573 5.5869 18 1 9.3010 -0.8722 6.7515 19 1 11.2477 -1.8720 5.7069 20 1 9.4929 -0.9142 4.3345 21 6 1.3724 -2.1412 1.4604 22 6 0.8085 -1.8478 2.6879 23 6 0.0120 -2.7819 3.3236 24 6 -0.2120 -4.0133 2.7365 25 6 0.3561 -4.3086 1.5115 26 6 1.1487 -3.3727 0.8736 27 1 -0.3633 0.1736 1.0129 28 1 -0.3634 0.7906 -0.6566 29 1 -0.3634 -0.9639 -0.3562 30 1 3.1824 1.3084 -0.4455 31 1 1.5812 2.0743 -0.5793 32 1 2.2773 1.7413 1.0247 33 1 3.1715 -0.8752 -1.2683 34 1 1.6115 -1.8589 -1.2681 35 1 6.1294 -0.9697 2.0439 36 1 5.2231 -0.5287 3.5110 37 1 7.6304 -1.5154 4.2145 38 1 10.2648 -4.2435 6.6612 39 1 0.9875 -0.8877 3.1488 40 1 -0.4316 -2.5513 4.2809 41 1 -0.8308 -4.7447 3.2353 42 1 0.1814 -5.2707 1.0531 43 1 1.5930 -3.6036 -0.0833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850291328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:40 Heat of formation + Delta-G solvation = -63.601608 kcal Electronic energy + Delta-G solvation = -26447.977405 eV Core-core repulsion = 22652.466618 eV Total energy + Delta-G solvation = -3795.510787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14544 -39.40743 -38.38545 -37.63342 -35.94905 -34.03622 -31.79071 -31.58978 -30.94209 -29.28838 -28.55670 -27.57644 -25.24601 -24.12844 -22.52532 -22.18679 -20.53583 -19.63630 -19.09428 -18.51296 -17.85586 -16.73937 -16.31423 -16.06153 -15.62117 -15.05837 -14.95749 -14.80661 -14.49163 -14.07248 -14.01543 -13.84382 -13.44425 -13.36013 -12.91450 -12.82561 -12.60327 -12.49381 -12.31156 -12.22489 -12.15748 -11.98386 -11.49685 -11.32630 -11.25306 -11.18055 -10.64099 -10.49086 -10.39268 -10.21073 -10.07123 -10.01602 -9.65554 -8.89557 -8.70410 -8.61053 -8.27208 -6.37530 -3.90189 1.29681 1.42051 2.10126 2.57302 2.99652 3.04218 3.12648 3.38748 3.58453 3.78145 4.05063 4.19434 4.31657 4.42537 4.58667 4.82362 4.85676 4.96789 5.01154 5.10355 5.12762 5.19087 5.38998 5.42999 5.45607 5.48191 5.56206 5.59308 5.60768 5.69338 5.70856 5.76750 5.80917 5.94131 5.97519 6.01617 6.24211 6.44516 6.50900 6.53943 6.58766 6.97527 7.46916 7.85253 8.03163 8.50280 8.85824 9.31929 9.68460 10.74913 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.003493 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.522206 B = 8013.379652 C = 9229.620447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C -0.108 4.108 4 C -0.138 4.138 5 C -0.096 4.096 6 C 0.499 3.501 7 O -0.507 6.507 8 O -0.313 6.313 9 C 0.057 3.943 10 C 0.449 3.551 11 O -0.553 6.553 12 N -0.581 5.581 13 C -0.307 4.307 14 H 0.122 0.878 15 C 0.045 3.955 16 N -0.876 5.876 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.268 1.268 21 C -0.039 4.039 22 C -0.101 4.101 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.101 4.101 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.373 0.627 38 H 0.275 0.725 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.647 9.655 -12.580 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.165 4.165 4 C -0.174 4.174 5 C -0.097 4.097 6 C 0.342 3.658 7 O -0.396 6.396 8 O -0.227 6.227 9 C -0.021 4.021 10 C 0.233 3.767 11 O -0.434 6.434 12 N -0.221 5.221 13 C -0.435 4.435 14 H 0.140 0.860 15 C -0.159 4.159 16 N -0.515 5.515 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.194 1.194 21 C -0.039 4.039 22 C -0.119 4.119 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.119 4.119 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.206 0.794 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.688 9.136 -12.446 24.241 hybrid contribution 1.223 1.204 0.376 1.757 sum -17.465 10.341 -12.070 23.615 Atomic orbital electron populations 1.21382 0.90893 1.02345 1.02504 1.21810 0.95264 0.91336 0.99233 1.21442 0.99832 0.92344 1.02895 1.23447 1.03269 1.01286 0.89444 1.19738 0.92885 1.02459 0.94624 1.22315 0.84426 0.82833 0.76244 1.90647 1.67692 1.22019 1.59280 1.86597 1.35309 1.40331 1.60471 1.22761 0.84139 0.97952 0.97243 1.19190 0.83557 0.89136 0.84776 1.90617 1.61315 1.27741 1.63772 1.42033 1.20680 1.12255 1.47165 1.19425 1.05591 0.91753 1.26767 0.86040 1.25027 0.96584 0.97704 0.96577 1.69616 1.20132 1.29561 1.32225 0.86684 0.80427 0.83589 0.78836 1.19419 1.19951 1.19386 1.18559 0.97014 0.93422 0.94938 1.20876 0.97071 0.99587 0.94376 1.21078 0.98824 0.93880 0.99671 1.21155 0.99998 0.96749 0.95614 1.21090 0.97702 0.99068 0.95650 1.20955 0.98009 0.92630 1.00344 0.91686 0.91494 0.91952 0.91488 0.92641 0.91215 0.87609 0.86947 0.89519 0.89529 0.79447 0.91425 0.86534 0.86006 0.86108 0.85947 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 8.86 37.15 0.33 -0.60 16 2 C -0.08 -0.77 2.70 -154.50 -0.42 -1.19 16 3 C -0.11 -1.12 8.09 37.16 0.30 -0.82 16 4 C -0.14 -1.37 8.72 -26.72 -0.23 -1.60 16 5 C -0.10 -1.22 2.23 -156.81 -0.35 -1.57 16 6 C 0.50 7.99 7.40 36.00 0.27 8.26 16 7 O -0.51 -8.31 12.86 -18.75 -0.24 -8.55 16 8 O -0.31 -5.97 9.44 -45.90 -0.43 -6.41 16 9 C 0.06 1.06 5.94 36.00 0.21 1.27 16 10 C 0.45 10.68 7.86 -10.99 -0.09 10.59 16 11 O -0.55 -15.61 16.08 -14.11 -0.23 -15.84 16 12 N -0.58 -14.06 5.09 -10.96 -0.06 -14.11 16 13 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 14 H 0.12 3.93 7.39 -52.48 -0.39 3.54 16 15 C 0.04 1.22 5.50 -17.47 -0.10 1.13 16 16 N -0.88 -25.40 13.96 55.50 0.77 -24.63 16 17 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 21 C -0.04 -0.51 3.80 -104.62 -0.40 -0.91 16 22 C -0.10 -1.30 9.52 -39.59 -0.38 -1.68 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 26 C -0.10 -1.23 9.23 -39.58 -0.37 -1.60 16 27 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16 28 H 0.07 0.44 8.01 -51.93 -0.42 0.03 16 29 H 0.06 0.49 7.81 -51.93 -0.41 0.09 16 30 H 0.07 0.76 7.02 -51.93 -0.36 0.40 16 31 H 0.05 0.46 7.99 -51.93 -0.41 0.04 16 32 H 0.07 0.82 7.26 -51.93 -0.38 0.44 16 33 H 0.11 1.03 8.05 -51.93 -0.42 0.61 16 34 H 0.11 0.90 7.09 -51.93 -0.37 0.53 16 35 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 36 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 37 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 38 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.12 1.29 7.04 -52.49 -0.37 0.92 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -33.97 364.30 -7.84 -41.81 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.88 Total: 10.50 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.56 Total: -2.80 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.72 Total: -38.74 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.90 Total: -30.80 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.97 -7.84 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850291328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.795 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds