Wall clock time and date at job start Tue Mar 31 2020 11:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00380 * 2 1 4 4 H 1.48501 * 109.46893 * 239.99402 * 3 2 1 5 5 H 1.48493 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46938 * 119.99892 * 3 2 1 7 7 C 1.37881 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47341 * 180.02562 * 10 9 7 12 12 O 1.20833 * 120.00142 * 359.97438 * 11 10 9 13 13 O 1.34262 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.35945 * 116.99759 * 185.10000 * 13 11 10 15 15 C 1.38856 * 119.98225 * 245.54967 * 14 13 11 16 16 C 1.38244 * 120.23453 * 179.97438 * 15 14 13 17 17 C 1.38003 * 120.20729 * 0.02562 * 16 15 14 18 18 C 1.39571 * 119.96506 * 359.72106 * 17 16 15 19 19 C 1.47855 * 120.11814 * 180.27425 * 18 17 16 20 20 O 1.21555 * 120.00022 * 7.28042 * 19 18 17 21 21 N 1.34775 * 120.00182 * 187.27870 * 19 18 17 22 22 C 1.47025 * 125.64794 * 354.59229 * 21 19 18 23 23 C 1.54309 * 107.27562 * 180.96762 * 22 21 19 24 24 C 1.55156 * 102.86574 * 22.52978 * 23 22 21 25 25 C 1.47430 * 125.65110 * 174.90566 * 21 19 18 26 26 C 1.38447 * 119.98349 * 65.52600 * 14 13 11 27 27 H 0.97006 * 119.99476 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47591 * 59.99881 * 9 7 2 29 29 H 1.09004 * 109.47663 * 299.99540 * 9 7 2 30 30 H 1.09003 * 109.47147 * 60.00024 * 10 9 7 31 31 H 1.09004 * 109.47338 * 299.99700 * 10 9 7 32 32 H 1.07996 * 119.88533 * 359.97438 * 15 14 13 33 33 H 1.08002 * 119.89109 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.02099 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.87897 * 300.51749 * 22 21 19 36 36 H 1.08998 * 109.87977 * 61.67669 * 22 21 19 37 37 H 1.09000 * 110.92885 * 264.10710 * 23 22 21 38 38 H 1.09008 * 110.58866 * 140.78656 * 23 22 21 39 39 H 1.08996 * 111.00239 * 206.22734 * 24 23 22 40 40 H 1.08996 * 111.00306 * 82.37328 * 24 23 22 41 41 H 1.09000 * 110.35945 * 274.67090 * 25 21 19 42 42 H 1.08996 * 110.36537 * 36.88123 * 25 21 19 43 43 H 1.08000 * 120.09901 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4915 -4.9672 -0.0001 12 8 0.2832 -4.9672 0.0000 13 8 2.1628 -6.1300 -0.0007 14 6 1.4264 -7.2676 -0.1090 15 6 1.3830 -8.1691 0.9462 16 6 0.6355 -9.3273 0.8420 17 6 -0.0723 -9.5954 -0.3120 18 6 -0.0389 -8.6926 -1.3758 19 6 -0.8008 -8.9735 -2.6115 20 8 -1.5607 -9.9213 -2.6547 21 7 -0.6528 -8.1787 -3.6898 22 6 0.1405 -6.9419 -3.7403 23 6 -0.0033 -6.3630 -5.1634 24 6 -1.3286 -6.9972 -5.6621 25 6 -1.2649 -8.4020 -5.0123 26 6 0.7198 -7.5264 -1.2710 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8905 31 1 2.8717 -3.6045 -0.8895 32 1 1.9352 -7.9648 1.8516 33 1 0.6054 -10.0245 1.6663 34 1 -0.6550 -10.5014 -0.3903 35 1 -0.2378 -6.2287 -3.0079 36 1 1.1879 -7.1648 -3.5369 37 1 0.8316 -6.6682 -5.7941 38 1 -0.0848 -5.2765 -5.1289 39 1 -1.3420 -7.0700 -6.7495 40 1 -2.1905 -6.4375 -5.2988 41 1 -0.6434 -9.0686 -5.6101 42 1 -2.2669 -8.8164 -4.9015 43 1 0.7521 -6.8256 -2.0921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851571003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:59 Heat of formation + Delta-G solvation = -69.781235 kcal Electronic energy + Delta-G solvation = -26177.493906 eV Core-core repulsion = 22381.715150 eV Total energy + Delta-G solvation = -3795.778756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29873 -40.35469 -38.43054 -37.50425 -36.46768 -33.69786 -32.68485 -31.39542 -31.02998 -30.25919 -29.12530 -26.28431 -25.22230 -23.70209 -22.68270 -22.18926 -21.26512 -20.38707 -19.64214 -18.00450 -17.46416 -16.89448 -16.69892 -16.42742 -16.12883 -15.74985 -15.47499 -14.74482 -14.59348 -14.54103 -14.12003 -13.81274 -13.58538 -13.27541 -13.05706 -12.94832 -12.76409 -12.46024 -12.31835 -12.05393 -11.86867 -11.51227 -11.36357 -11.27478 -11.04877 -11.00365 -10.78788 -10.72154 -10.16911 -10.15595 -10.03600 -9.73095 -9.29166 -9.21030 -8.97500 -8.73596 -8.44959 -6.08789 -4.14461 0.63765 1.03540 2.50685 2.61678 2.70171 3.05208 3.27922 3.33349 3.34915 3.72414 4.08574 4.23586 4.37914 4.48134 4.63411 4.68609 4.87421 4.92748 4.99710 5.03328 5.08642 5.22107 5.25650 5.26818 5.45730 5.50371 5.55898 5.59924 5.70138 5.71200 5.86535 5.94779 5.97100 6.05705 6.06380 6.12200 6.19335 6.41193 6.66897 6.85906 7.21803 7.56363 7.61436 7.88664 7.92780 8.12648 8.28076 8.92078 9.50236 11.01974 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.003371 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.757959 B = 8303.826459 C = 9915.348412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.034 3.966 10 C -0.100 4.100 11 C 0.451 3.549 12 O -0.484 6.484 13 O -0.303 6.303 14 C 0.088 3.912 15 C -0.097 4.097 16 C -0.113 4.113 17 C -0.066 4.066 18 C -0.120 4.120 19 C 0.579 3.421 20 O -0.538 6.538 21 N -0.614 5.614 22 C 0.083 3.917 23 C -0.135 4.135 24 C -0.134 4.134 25 C 0.105 3.895 26 C -0.132 4.132 27 H 0.263 0.737 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -17.595 -7.317 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.138 4.138 11 C 0.295 3.705 12 O -0.367 6.367 13 O -0.219 6.219 14 C 0.046 3.954 15 C -0.115 4.115 16 C -0.131 4.131 17 C -0.085 4.085 18 C -0.123 4.123 19 C 0.370 3.630 20 O -0.417 6.417 21 N -0.347 5.347 22 C -0.039 4.039 23 C -0.173 4.173 24 C -0.173 4.173 25 C -0.017 4.017 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.712 -18.027 -7.270 19.513 hybrid contribution 0.439 0.967 0.125 1.070 sum 2.151 -17.060 -7.145 18.621 Atomic orbital electron populations 1.69979 1.06111 1.26992 1.49566 1.25010 0.94848 0.99343 0.94976 0.86598 0.79525 0.82833 0.78691 1.20121 1.21224 1.20120 1.21083 0.93054 0.90513 1.52309 0.92274 1.19040 0.93160 0.89162 0.99002 1.21851 1.00787 0.86737 1.04418 1.25359 0.88291 0.85028 0.71779 1.90691 1.15610 1.86771 1.43623 1.84769 1.40005 1.13364 1.83795 1.18523 0.95864 0.87255 0.93763 1.21352 0.98291 0.94489 0.97406 1.20988 0.97052 0.97079 0.98028 1.21273 0.96959 0.98686 0.91599 1.19618 1.00789 0.96557 0.95308 1.17899 0.81553 0.81567 0.82017 1.90759 1.37851 1.29960 1.83112 1.48340 1.50088 1.25015 1.11305 1.22642 0.96055 0.86347 0.98837 1.22730 0.98209 1.01712 0.94633 1.22812 0.98367 0.95137 1.00938 1.22273 0.99183 0.97576 0.82644 1.22907 0.95051 0.97912 0.99160 0.92710 0.95541 0.95493 0.88540 0.88535 0.84553 0.84431 0.84347 0.89640 0.90208 0.90144 0.89133 0.89499 0.90212 0.91201 0.90081 0.81858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.10 -1.90 5.75 -27.88 -0.16 -2.06 16 11 C 0.45 8.34 7.71 36.01 0.28 8.62 16 12 O -0.48 -10.47 15.25 -18.75 -0.29 -10.75 16 13 O -0.30 -4.83 10.05 -23.68 -0.24 -5.07 16 14 C 0.09 1.31 5.38 -39.28 -0.21 1.10 16 15 C -0.10 -1.21 9.98 -39.35 -0.39 -1.61 16 16 C -0.11 -1.24 10.03 -39.67 -0.40 -1.64 16 17 C -0.07 -0.83 9.59 -39.17 -0.38 -1.20 16 18 C -0.12 -1.69 5.87 -104.99 -0.62 -2.31 16 19 C 0.58 8.56 7.81 -12.33 -0.10 8.46 16 20 O -0.54 -9.19 16.60 5.32 0.09 -9.10 16 21 N -0.61 -7.57 3.33 -175.77 -0.58 -8.16 16 22 C 0.08 0.89 4.86 -3.07 -0.01 0.88 16 23 C -0.13 -1.11 6.95 -24.91 -0.17 -1.28 16 24 C -0.13 -1.05 7.08 -24.59 -0.17 -1.22 16 25 C 0.11 1.03 6.93 -2.53 -0.02 1.02 16 26 C -0.13 -1.91 7.66 -39.03 -0.30 -2.21 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.58 7.66 -52.49 -0.40 1.18 16 35 H 0.09 1.07 6.71 -51.93 -0.35 0.72 16 36 H 0.08 0.79 6.77 -51.93 -0.35 0.44 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.85 7.99 -51.93 -0.41 0.44 16 43 H 0.16 2.23 2.75 -57.84 -0.16 2.07 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -33.44 361.03 -8.91 -42.35 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.86 Total: 0.64 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -3.18 Total: -5.67 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.15 Total: -33.56 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.44 Total: -24.92 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.44 -8.91 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851571003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.429 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds