Wall clock time and date at job start Tue Mar 31 2020 11:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00380 * 2 1 4 4 H 1.48501 * 109.46893 * 239.99402 * 3 2 1 5 5 H 1.48493 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46938 * 119.99892 * 3 2 1 7 7 C 1.37881 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47341 * 180.02562 * 10 9 7 12 12 O 1.20833 * 120.00142 * 359.97438 * 11 10 9 13 13 O 1.34262 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.35945 * 116.99759 * 185.10000 * 13 11 10 15 15 C 1.38856 * 119.98225 * 245.54967 * 14 13 11 16 16 C 1.38244 * 120.23453 * 179.97438 * 15 14 13 17 17 C 1.38003 * 120.20729 * 0.02562 * 16 15 14 18 18 C 1.39571 * 119.96506 * 359.72106 * 17 16 15 19 19 C 1.47855 * 120.11814 * 180.27425 * 18 17 16 20 20 O 1.21555 * 120.00022 * 7.28042 * 19 18 17 21 21 N 1.34775 * 120.00182 * 187.27870 * 19 18 17 22 22 C 1.47025 * 125.64794 * 354.59229 * 21 19 18 23 23 C 1.54309 * 107.27562 * 180.96762 * 22 21 19 24 24 C 1.55156 * 102.86574 * 22.52978 * 23 22 21 25 25 C 1.47430 * 125.65110 * 174.90566 * 21 19 18 26 26 C 1.38447 * 119.98349 * 65.52600 * 14 13 11 27 27 H 0.97006 * 119.99476 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47591 * 59.99881 * 9 7 2 29 29 H 1.09004 * 109.47663 * 299.99540 * 9 7 2 30 30 H 1.09003 * 109.47147 * 60.00024 * 10 9 7 31 31 H 1.09004 * 109.47338 * 299.99700 * 10 9 7 32 32 H 1.07996 * 119.88533 * 359.97438 * 15 14 13 33 33 H 1.08002 * 119.89109 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.02099 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.87897 * 300.51749 * 22 21 19 36 36 H 1.08998 * 109.87977 * 61.67669 * 22 21 19 37 37 H 1.09000 * 110.92885 * 264.10710 * 23 22 21 38 38 H 1.09008 * 110.58866 * 140.78656 * 23 22 21 39 39 H 1.08996 * 111.00239 * 206.22734 * 24 23 22 40 40 H 1.08996 * 111.00306 * 82.37328 * 24 23 22 41 41 H 1.09000 * 110.35945 * 274.67090 * 25 21 19 42 42 H 1.08996 * 110.36537 * 36.88123 * 25 21 19 43 43 H 1.08000 * 120.09901 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4915 -4.9672 -0.0001 12 8 0.2832 -4.9672 0.0000 13 8 2.1628 -6.1300 -0.0007 14 6 1.4264 -7.2676 -0.1090 15 6 1.3830 -8.1691 0.9462 16 6 0.6355 -9.3273 0.8420 17 6 -0.0723 -9.5954 -0.3120 18 6 -0.0389 -8.6926 -1.3758 19 6 -0.8008 -8.9735 -2.6115 20 8 -1.5607 -9.9213 -2.6547 21 7 -0.6528 -8.1787 -3.6898 22 6 0.1405 -6.9419 -3.7403 23 6 -0.0033 -6.3630 -5.1634 24 6 -1.3286 -6.9972 -5.6621 25 6 -1.2649 -8.4020 -5.0123 26 6 0.7198 -7.5264 -1.2710 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8905 31 1 2.8717 -3.6045 -0.8895 32 1 1.9352 -7.9648 1.8516 33 1 0.6054 -10.0245 1.6663 34 1 -0.6550 -10.5014 -0.3903 35 1 -0.2378 -6.2287 -3.0079 36 1 1.1879 -7.1648 -3.5369 37 1 0.8316 -6.6682 -5.7941 38 1 -0.0848 -5.2765 -5.1289 39 1 -1.3420 -7.0700 -6.7495 40 1 -2.1905 -6.4375 -5.2988 41 1 -0.6434 -9.0686 -5.6101 42 1 -2.2669 -8.8164 -4.9015 43 1 0.7521 -6.8256 -2.0921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851571003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:58 Heat of formation + Delta-G solvation = -88.503122 kcal Electronic energy + Delta-G solvation = -26178.305748 eV Core-core repulsion = 22381.715150 eV Total energy + Delta-G solvation = -3796.590598 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54248 -41.47601 -39.54005 -38.57769 -37.79645 -35.65795 -33.62390 -33.22532 -31.94918 -31.42949 -29.97851 -28.12517 -26.19874 -25.18965 -23.64745 -23.45360 -22.30327 -21.63993 -20.88993 -19.24734 -18.86622 -18.31502 -17.68087 -17.58470 -17.49951 -17.12113 -16.63803 -16.46148 -15.89244 -15.69474 -15.06385 -14.88237 -14.66443 -14.54050 -14.27868 -14.17837 -14.02104 -13.69668 -13.54108 -13.26746 -13.04663 -12.85969 -12.79057 -12.54678 -12.44586 -12.22921 -11.99014 -11.86394 -11.76188 -11.68940 -11.51546 -11.31036 -11.13510 -10.55499 -10.23114 -10.02062 -9.77899 -8.18681 -6.32267 -0.41460 -0.03268 1.08325 1.43475 1.47345 1.48783 1.56622 1.74586 1.81264 2.44329 2.66381 3.14670 3.15772 3.44107 3.59435 3.69310 3.81114 3.91606 3.96194 4.03318 4.13710 4.19508 4.31052 4.35169 4.43134 4.44070 4.58011 4.63986 4.70533 4.81337 4.86579 4.94479 4.98567 5.02286 5.07649 5.13639 5.19744 5.28384 5.32529 5.48110 5.55285 5.69976 5.81399 6.13773 6.19286 6.76273 6.83849 6.86746 7.38329 8.93414 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.003371 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.757959 B = 8303.826459 C = 9915.348412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.039 3.961 10 C -0.090 4.090 11 C 0.461 3.539 12 O -0.524 6.524 13 O -0.288 6.288 14 C 0.053 3.947 15 C -0.094 4.094 16 C -0.101 4.101 17 C -0.067 4.067 18 C -0.138 4.138 19 C 0.570 3.430 20 O -0.572 6.572 21 N -0.614 5.614 22 C 0.080 3.920 23 C -0.129 4.129 24 C -0.126 4.126 25 C 0.098 3.902 26 C -0.139 4.139 27 H 0.263 0.737 28 H -0.007 1.007 29 H -0.011 1.011 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.148 0.852 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 -17.936 -7.514 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.002 3.998 10 C -0.127 4.127 11 C 0.307 3.693 12 O -0.410 6.410 13 O -0.204 6.204 14 C 0.012 3.988 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.086 4.086 18 C -0.141 4.141 19 C 0.361 3.639 20 O -0.453 6.453 21 N -0.347 5.347 22 C -0.042 4.042 23 C -0.167 4.167 24 C -0.164 4.164 25 C -0.024 4.024 26 C -0.157 4.157 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.007 0.993 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.178 0.822 33 H 0.196 0.804 34 H 0.166 0.834 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.083 -18.372 -7.489 20.256 hybrid contribution -0.314 0.961 0.194 1.030 sum 3.770 -17.411 -7.295 19.250 Atomic orbital electron populations 1.70150 1.08203 1.27933 1.51194 1.26043 0.95635 1.03694 0.94530 0.85418 0.78085 0.77539 0.79507 1.18587 1.21576 1.18863 1.21599 0.94167 0.91147 1.51201 0.90265 1.18808 0.93640 0.91767 0.95631 1.21599 0.99365 0.84866 1.06893 1.25134 0.87516 0.85857 0.70769 1.90685 1.17289 1.87446 1.45585 1.84729 1.39381 1.13025 1.83248 1.18866 0.97547 0.87340 0.95093 1.21711 0.97981 0.94177 0.97351 1.21410 0.95159 0.96910 0.98338 1.21574 0.96796 0.98587 0.91657 1.19756 1.01319 0.97158 0.95895 1.18112 0.81425 0.81543 0.82793 1.90724 1.39363 1.31431 1.83809 1.48500 1.49694 1.24811 1.11650 1.22698 0.96045 0.85347 1.00128 1.22760 0.99243 1.01618 0.93050 1.22815 0.97716 0.93388 1.02463 1.22505 0.98783 0.99237 0.81831 1.22974 0.95175 0.98147 0.99439 0.92826 0.98813 0.99293 0.86159 0.85762 0.82233 0.80365 0.83423 0.92019 0.89403 0.87906 0.89036 0.86559 0.91241 0.89523 0.91218 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.52 13.29 21.45 0.28 -56.23 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.54 -28.91 9.11 25.60 0.23 -28.68 16 8 H 0.08 3.81 7.74 -2.91 -0.02 3.78 16 9 C 0.04 1.99 4.26 29.85 0.13 2.11 16 10 C -0.09 -3.33 5.75 29.85 0.17 -3.16 16 11 C 0.46 17.10 7.71 71.24 0.55 17.65 16 12 O -0.52 -23.50 15.25 21.94 0.33 -23.17 16 13 O -0.29 -8.95 10.05 4.32 0.04 -8.91 16 14 C 0.05 1.55 5.38 22.47 0.12 1.67 16 15 C -0.09 -2.17 9.98 22.42 0.22 -1.95 16 16 C -0.10 -1.96 10.03 22.22 0.22 -1.74 16 17 C -0.07 -1.62 9.59 22.54 0.22 -1.40 16 18 C -0.14 -3.96 5.87 -20.10 -0.12 -4.08 16 19 C 0.57 17.37 7.81 86.79 0.68 18.04 16 20 O -0.57 -20.12 16.60 -3.89 -0.06 -20.18 16 21 N -0.61 -15.48 3.33 -828.28 -2.76 -18.24 16 22 C 0.08 1.74 4.86 86.72 0.42 2.16 16 23 C -0.13 -1.98 6.95 31.78 0.22 -1.76 16 24 C -0.13 -1.83 7.08 31.98 0.23 -1.60 16 25 C 0.10 1.89 6.93 86.85 0.60 2.49 16 26 C -0.14 -4.08 7.66 22.63 0.17 -3.91 16 27 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 28 H -0.01 -0.37 8.10 -2.39 -0.02 -0.39 16 29 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 30 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.12 3.92 8.14 -2.38 -0.02 3.90 16 32 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.15 3.25 7.66 -2.91 -0.02 3.23 16 35 H 0.06 1.65 6.71 -2.39 -0.02 1.64 16 36 H 0.09 1.76 6.77 -2.39 -0.02 1.74 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.51 7.99 -2.39 -0.02 1.49 16 43 H 0.17 4.65 2.75 -7.94 -0.02 4.63 16 Total: -1.00 -75.41 361.03 5.41 -70.00 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.01 Total: 16.27 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.53 Total: -3.74 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.47 Total: -74.47 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: 0.31 Total: -52.26 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -75.41 5.41 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851571003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.500 kcal (2) G-P(sol) polarization free energy of solvation -75.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds