Wall clock time and date at job start Tue Mar 31 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.43507 * 2 1 4 4 O 1.45195 * 109.47397 * 302.54262 * 3 2 1 5 5 C 1.34228 * 117.00231 * 180.02562 * 4 3 2 6 6 O 1.20820 * 119.99746 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00075 * 180.02562 * 5 4 3 8 8 C 1.50698 * 109.47013 * 179.97438 * 7 5 4 9 9 C 1.37642 * 120.12793 * 264.97505 * 8 7 5 10 10 C 1.38614 * 120.24896 * 180.02562 * 9 8 7 11 11 C 1.38651 * 120.50098 * 359.97438 * 10 9 8 12 12 C 1.37603 * 120.25128 * 0.02562 * 11 10 9 13 13 C 1.40698 * 120.12946 * 84.99862 * 8 7 5 14 14 C 1.41398 * 120.24082 * 359.97438 * 13 8 7 15 15 H 1.07995 * 120.00181 * 334.03599 * 14 13 8 16 16 C 1.39948 * 119.99873 * 154.03040 * 14 13 8 17 17 N 1.30820 * 120.00005 * 343.66140 * 16 14 13 18 18 Si 1.86797 * 120.00056 * 163.65231 * 16 14 13 19 19 H 1.48499 * 109.47047 * 90.00307 * 18 16 14 20 20 H 1.48501 * 109.47319 * 210.00590 * 18 16 14 21 21 H 1.48508 * 109.47055 * 330.00527 * 18 16 14 22 22 C 1.54621 * 110.48848 * 122.54582 * 2 1 3 23 23 C 1.54486 * 101.76805 * 94.00916 * 22 2 1 24 24 N 1.46763 * 105.46951 * 25.41524 * 23 22 2 25 25 C 1.34415 * 111.30083 * 342.98419 * 24 23 22 26 26 O 1.21281 * 124.93937 * 180.44065 * 25 24 23 27 27 H 1.08999 * 109.47490 * 59.29345 * 1 2 3 28 28 H 1.08998 * 109.47413 * 179.29656 * 1 2 3 29 29 H 1.08998 * 109.47032 * 299.29669 * 1 2 3 30 30 H 1.09006 * 109.46952 * 182.54193 * 3 2 1 31 31 H 1.08994 * 109.46780 * 62.54766 * 3 2 1 32 32 H 1.09001 * 109.47206 * 59.99794 * 7 5 4 33 33 H 1.09007 * 109.47004 * 299.99846 * 7 5 4 34 34 H 1.07995 * 119.87434 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.75007 * 179.97438 * 10 9 8 36 36 H 1.08000 * 119.87490 * 180.28026 * 11 10 9 37 37 H 1.07992 * 120.13040 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00210 * 179.97438 * 17 16 14 39 39 H 1.08999 * 110.97018 * 212.12943 * 22 2 1 40 40 H 1.09006 * 110.96993 * 335.85567 * 22 2 1 41 41 H 1.08998 * 110.24658 * 144.41957 * 23 22 2 42 42 H 1.09003 * 110.24400 * 266.41577 * 23 22 2 43 43 H 0.96998 * 124.34304 * 162.98656 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 8 1.5432 2.1444 -1.1540 5 6 1.9195 3.4242 -1.3025 6 8 2.6595 3.9339 -0.4947 7 6 1.4183 4.2257 -2.4761 8 6 1.9836 5.6211 -2.4097 9 6 1.2556 6.6345 -1.8286 10 6 1.7730 7.9189 -1.7666 11 6 3.0273 8.1983 -2.2873 12 6 3.7727 7.2008 -2.8727 13 6 3.2574 5.8931 -2.9418 14 6 4.0143 4.8600 -3.5410 15 1 3.8544 3.8332 -3.2470 16 6 4.9706 5.1680 -4.5153 17 7 4.9529 6.3368 -5.1026 18 14 6.2724 3.9104 -4.9768 19 1 5.7717 3.0658 -6.0909 20 1 7.5091 4.6123 -5.4048 21 1 6.5713 3.0532 -3.8015 22 6 2.0712 -0.7792 1.2209 23 6 2.2805 -2.1898 0.6269 24 7 2.4801 -1.9829 -0.8123 25 6 2.0621 -0.7633 -1.1928 26 8 2.1048 -0.3372 -2.3275 27 1 -0.3634 0.5248 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 3.1531 1.4157 -0.0456 31 1 1.7471 1.9395 0.9119 32 1 0.3297 4.2732 -2.4453 33 1 1.7350 3.7487 -3.4037 34 1 0.2777 6.4280 -1.4195 35 1 1.1947 8.7081 -1.3092 36 1 3.4224 9.2018 -2.2294 37 1 4.7493 7.4207 -3.2780 38 1 5.6159 6.5505 -5.7776 39 1 3.0151 -0.3572 1.5659 40 1 1.3377 -0.7997 2.0270 41 1 3.1615 -2.6573 1.0666 42 1 1.3989 -2.8069 0.8006 43 1 2.8643 -2.6416 -1.4118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853177277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:33 Heat of formation + Delta-G solvation = -109.252771 kcal Electronic energy + Delta-G solvation = -26668.733632 eV Core-core repulsion = 22871.243261 eV Total energy + Delta-G solvation = -3797.490370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90504 -39.60027 -37.56229 -36.57526 -35.79942 -33.59516 -33.48135 -31.73242 -29.44527 -29.05222 -27.65347 -26.56121 -25.09652 -24.50285 -22.20762 -21.07417 -20.86366 -19.29940 -19.20790 -17.46357 -17.13358 -16.88457 -16.48476 -16.00140 -15.67451 -15.17919 -14.76457 -14.43971 -14.17333 -14.12709 -13.60657 -13.57289 -13.37894 -13.05087 -12.61241 -12.56301 -12.39338 -12.31215 -12.00599 -11.76085 -11.52379 -11.25900 -11.14253 -11.11637 -10.98939 -10.91928 -10.68001 -10.36029 -10.23053 -9.66643 -9.62782 -9.46234 -9.34998 -9.28896 -9.11632 -7.31383 -7.28095 -6.71045 -4.31844 2.53528 2.76184 2.93157 3.06835 3.11203 3.15712 3.18111 3.31120 3.39345 3.99517 4.07958 4.09766 4.45604 4.67494 4.70306 4.82280 4.99221 5.14597 5.32453 5.40992 5.45296 5.54256 5.57852 5.69455 5.70777 5.85334 6.04387 6.07834 6.17565 6.31156 6.50362 6.53749 6.63780 6.80265 6.84175 7.07298 7.12588 7.31599 7.43752 7.67024 7.93470 8.09029 8.14785 8.19808 8.33644 8.57935 8.68556 8.94165 9.02921 10.23063 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.004168 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.447229 B = 6716.829509 C = 8250.816358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.095 4.095 3 C 0.087 3.913 4 O -0.350 6.350 5 C 0.461 3.539 6 O -0.498 6.498 7 C -0.041 4.041 8 C -0.193 4.193 9 C -0.077 4.077 10 C -0.241 4.241 11 C -0.105 4.105 12 C -0.159 4.159 13 C 0.131 3.869 14 C -0.456 4.456 15 H 0.075 0.925 16 C 0.079 3.921 17 N -0.793 5.793 18 Si 0.902 3.098 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.127 4.127 23 C 0.105 3.895 24 N -0.740 5.740 25 C 0.523 3.477 26 O -0.499 6.499 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 -16.014 10.642 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.098 4.098 3 C 0.012 3.988 4 O -0.267 6.267 5 C 0.304 3.696 6 O -0.384 6.384 7 C -0.079 4.079 8 C -0.195 4.195 9 C -0.095 4.095 10 C -0.261 4.261 11 C -0.123 4.123 12 C -0.178 4.178 13 C 0.128 3.872 14 C -0.486 4.486 15 H 0.093 0.907 16 C -0.139 4.139 17 N -0.418 5.418 18 Si 0.726 3.274 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.164 4.164 23 C -0.020 4.020 24 N -0.397 5.397 25 C 0.308 3.692 26 O -0.372 6.372 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.579 -15.416 10.170 19.293 hybrid contribution 1.009 -0.881 -0.282 1.369 sum -4.570 -16.297 9.888 19.602 Atomic orbital electron populations 1.21653 0.90676 1.02294 1.03988 1.21473 0.98894 0.94482 0.94981 1.22648 0.98619 0.89056 0.88490 1.86615 1.68044 1.26348 1.45728 1.24459 0.78367 0.79422 0.87392 1.90624 1.33468 1.70739 1.43529 1.19971 1.00054 0.93154 0.94684 1.19069 0.96618 0.91716 1.12049 1.20314 0.97461 0.93348 0.98386 1.20297 0.98362 0.95856 1.11541 1.20686 0.95050 0.97422 0.99147 1.21293 1.00318 0.93233 1.02975 1.17348 0.89086 0.92712 0.88040 1.19518 1.16369 0.94767 1.17924 0.90730 1.25864 0.97307 0.95881 0.94826 1.69815 1.31351 1.21569 1.19069 0.86406 0.80102 0.81185 0.79697 1.19310 1.20041 1.18559 1.22742 1.03073 0.93958 0.96672 1.22008 1.01983 0.97382 0.80612 1.46216 1.65528 1.17426 1.10554 1.20628 0.77025 0.81933 0.89643 1.90828 1.53954 1.71046 1.21323 0.90447 0.92252 0.91214 0.91374 0.90578 0.89466 0.87387 0.89580 0.89567 0.89510 0.86476 0.90906 0.89415 0.88472 0.90170 0.90997 0.75187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.36 37.16 0.31 -0.94 16 2 C -0.09 -1.06 0.72 -154.52 -0.11 -1.17 16 3 C 0.09 1.29 4.28 37.16 0.16 1.45 16 4 O -0.35 -6.51 8.67 -43.85 -0.38 -6.89 16 5 C 0.46 9.90 7.59 36.01 0.27 10.18 16 6 O -0.50 -12.09 15.78 -18.75 -0.30 -12.39 16 7 C -0.04 -0.89 5.29 -29.04 -0.15 -1.04 16 8 C -0.19 -4.80 4.43 -103.91 -0.46 -5.26 16 9 C -0.08 -1.80 9.66 -39.66 -0.38 -2.18 16 10 C -0.24 -5.67 10.05 -39.29 -0.39 -6.06 16 11 C -0.10 -2.58 10.02 -39.66 -0.40 -2.98 16 12 C -0.16 -4.32 8.69 -38.87 -0.34 -4.65 16 13 C 0.13 3.59 5.56 -106.82 -0.59 3.00 16 14 C -0.46 -12.56 8.14 -37.74 -0.31 -12.86 16 15 H 0.07 2.05 6.68 -52.49 -0.35 1.70 16 16 C 0.08 2.06 5.16 -17.34 -0.09 1.97 16 17 N -0.79 -20.98 10.97 55.55 0.61 -20.37 16 18 Si 0.90 19.88 29.59 -169.99 -5.03 14.85 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.13 -0.86 6.23 -25.10 -0.16 -1.02 16 23 C 0.10 0.60 7.78 -3.12 -0.02 0.58 16 24 N -0.74 -6.91 6.24 -59.20 -0.37 -7.28 16 25 C 0.52 7.21 7.18 -10.86 -0.08 7.13 16 26 O -0.50 -9.48 17.15 -5.89 -0.10 -9.58 16 27 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 31 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 32 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 33 H 0.11 2.38 7.06 -51.93 -0.37 2.01 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.12 3.26 6.22 -52.49 -0.33 2.93 16 38 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 39 H 0.09 0.59 7.91 -51.93 -0.41 0.18 16 40 H 0.10 0.44 7.90 -51.93 -0.41 0.03 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.41 3.25 8.96 -40.82 -0.37 2.89 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -34.32 360.61 -8.86 -43.18 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.99 Total: 6.90 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.74 Total: -13.86 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.24 Total: -27.64 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.78 Total: -28.86 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.32 -8.86 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853177277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.075 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds