Wall clock time and date at job start Tue Mar 31 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.43507 * 2 1 4 4 O 1.45195 * 109.47397 * 302.54262 * 3 2 1 5 5 C 1.34228 * 117.00231 * 180.02562 * 4 3 2 6 6 O 1.20820 * 119.99746 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00075 * 180.02562 * 5 4 3 8 8 C 1.50698 * 109.47013 * 179.97438 * 7 5 4 9 9 C 1.37642 * 120.12793 * 264.97505 * 8 7 5 10 10 C 1.38614 * 120.24896 * 180.02562 * 9 8 7 11 11 C 1.38651 * 120.50098 * 359.97438 * 10 9 8 12 12 C 1.37603 * 120.25128 * 0.02562 * 11 10 9 13 13 C 1.40698 * 120.12946 * 84.99862 * 8 7 5 14 14 C 1.41398 * 120.24082 * 359.97438 * 13 8 7 15 15 H 1.07995 * 120.00181 * 334.03599 * 14 13 8 16 16 C 1.39948 * 119.99873 * 154.03040 * 14 13 8 17 17 N 1.30820 * 120.00005 * 343.66140 * 16 14 13 18 18 Si 1.86797 * 120.00056 * 163.65231 * 16 14 13 19 19 H 1.48499 * 109.47047 * 90.00307 * 18 16 14 20 20 H 1.48501 * 109.47319 * 210.00590 * 18 16 14 21 21 H 1.48508 * 109.47055 * 330.00527 * 18 16 14 22 22 C 1.54621 * 110.48848 * 122.54582 * 2 1 3 23 23 C 1.54486 * 101.76805 * 94.00916 * 22 2 1 24 24 N 1.46763 * 105.46951 * 25.41524 * 23 22 2 25 25 C 1.34415 * 111.30083 * 342.98419 * 24 23 22 26 26 O 1.21281 * 124.93937 * 180.44065 * 25 24 23 27 27 H 1.08999 * 109.47490 * 59.29345 * 1 2 3 28 28 H 1.08998 * 109.47413 * 179.29656 * 1 2 3 29 29 H 1.08998 * 109.47032 * 299.29669 * 1 2 3 30 30 H 1.09006 * 109.46952 * 182.54193 * 3 2 1 31 31 H 1.08994 * 109.46780 * 62.54766 * 3 2 1 32 32 H 1.09001 * 109.47206 * 59.99794 * 7 5 4 33 33 H 1.09007 * 109.47004 * 299.99846 * 7 5 4 34 34 H 1.07995 * 119.87434 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.75007 * 179.97438 * 10 9 8 36 36 H 1.08000 * 119.87490 * 180.28026 * 11 10 9 37 37 H 1.07992 * 120.13040 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00210 * 179.97438 * 17 16 14 39 39 H 1.08999 * 110.97018 * 212.12943 * 22 2 1 40 40 H 1.09006 * 110.96993 * 335.85567 * 22 2 1 41 41 H 1.08998 * 110.24658 * 144.41957 * 23 22 2 42 42 H 1.09003 * 110.24400 * 266.41577 * 23 22 2 43 43 H 0.96998 * 124.34304 * 162.98656 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 8 1.5432 2.1444 -1.1540 5 6 1.9195 3.4242 -1.3025 6 8 2.6595 3.9339 -0.4947 7 6 1.4183 4.2257 -2.4761 8 6 1.9836 5.6211 -2.4097 9 6 1.2556 6.6345 -1.8286 10 6 1.7730 7.9189 -1.7666 11 6 3.0273 8.1983 -2.2873 12 6 3.7727 7.2008 -2.8727 13 6 3.2574 5.8931 -2.9418 14 6 4.0143 4.8600 -3.5410 15 1 3.8544 3.8332 -3.2470 16 6 4.9706 5.1680 -4.5153 17 7 4.9529 6.3368 -5.1026 18 14 6.2724 3.9104 -4.9768 19 1 5.7717 3.0658 -6.0909 20 1 7.5091 4.6123 -5.4048 21 1 6.5713 3.0532 -3.8015 22 6 2.0712 -0.7792 1.2209 23 6 2.2805 -2.1898 0.6269 24 7 2.4801 -1.9829 -0.8123 25 6 2.0621 -0.7633 -1.1928 26 8 2.1048 -0.3372 -2.3275 27 1 -0.3634 0.5248 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 3.1531 1.4157 -0.0456 31 1 1.7471 1.9395 0.9119 32 1 0.3297 4.2732 -2.4453 33 1 1.7350 3.7487 -3.4037 34 1 0.2777 6.4280 -1.4195 35 1 1.1947 8.7081 -1.3092 36 1 3.4224 9.2018 -2.2294 37 1 4.7493 7.4207 -3.2780 38 1 5.6159 6.5505 -5.7776 39 1 3.0151 -0.3572 1.5659 40 1 1.3377 -0.7997 2.0270 41 1 3.1615 -2.6573 1.0666 42 1 1.3989 -2.8069 0.8006 43 1 2.8643 -2.6416 -1.4118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853177277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:33 Heat of formation + Delta-G solvation = -130.915043 kcal Electronic energy + Delta-G solvation = -26669.672978 eV Core-core repulsion = 22871.243261 eV Total energy + Delta-G solvation = -3798.429717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94028 -41.11948 -39.41400 -37.68973 -37.28505 -35.55935 -34.44531 -33.54512 -31.40496 -29.78886 -29.12487 -27.88385 -26.93281 -25.55097 -23.07066 -22.85832 -22.54163 -21.04075 -20.23086 -19.12425 -18.59362 -18.28642 -17.67651 -17.39223 -17.12013 -16.70730 -16.28631 -15.87127 -15.57734 -15.45295 -15.04339 -14.95656 -14.43144 -14.38814 -14.13600 -13.75923 -13.59706 -13.43069 -13.20283 -13.10760 -13.03476 -12.95534 -12.81141 -12.77791 -12.56278 -12.17574 -12.10626 -11.93713 -11.64279 -11.37688 -11.35947 -11.25569 -11.07885 -10.72792 -10.06499 -9.26723 -9.23928 -8.66203 -6.36314 0.89864 1.06593 1.28902 1.36345 1.40290 1.47675 1.51361 1.91277 2.15214 2.39738 2.72429 3.22908 3.36198 3.63603 3.78668 3.93370 4.01139 4.11655 4.26178 4.28030 4.33675 4.44814 4.55148 4.58121 4.69191 4.73571 4.75301 4.79607 4.85992 4.98732 5.05419 5.08685 5.14402 5.29815 5.33029 5.46214 5.49796 5.72455 5.89033 5.99278 6.00784 6.11232 6.18180 6.37281 6.68253 6.92491 6.94509 7.04747 7.26295 8.30352 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.004168 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.447229 B = 6716.829509 C = 8250.816358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C 0.078 3.922 4 O -0.350 6.350 5 C 0.467 3.533 6 O -0.533 6.533 7 C -0.042 4.042 8 C -0.200 4.200 9 C -0.084 4.084 10 C -0.238 4.238 11 C -0.111 4.111 12 C -0.191 4.191 13 C 0.098 3.902 14 C -0.488 4.488 15 H 0.060 0.940 16 C 0.042 3.958 17 N -0.819 5.819 18 Si 0.964 3.036 19 H -0.260 1.260 20 H -0.257 1.257 21 H -0.273 1.273 22 C -0.118 4.118 23 C 0.101 3.899 24 N -0.728 5.728 25 C 0.507 3.493 26 O -0.569 6.569 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.288 0.712 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -17.665 12.890 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 C 0.003 3.997 4 O -0.267 6.267 5 C 0.311 3.689 6 O -0.422 6.422 7 C -0.080 4.080 8 C -0.202 4.202 9 C -0.102 4.102 10 C -0.257 4.257 11 C -0.130 4.130 12 C -0.210 4.210 13 C 0.096 3.904 14 C -0.518 4.518 15 H 0.078 0.922 16 C -0.173 4.173 17 N -0.445 5.445 18 Si 0.785 3.215 19 H -0.185 1.185 20 H -0.180 1.180 21 H -0.198 1.198 22 C -0.156 4.156 23 C -0.022 4.022 24 N -0.383 5.383 25 C 0.293 3.707 26 O -0.447 6.447 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.911 -17.117 12.457 22.270 hybrid contribution 1.322 -0.410 -0.862 1.630 sum -5.589 -17.527 11.595 21.746 Atomic orbital electron populations 1.21671 0.89309 1.03705 1.03630 1.21590 0.99959 0.91980 0.96122 1.23052 0.97752 0.91227 0.87632 1.86601 1.67637 1.24945 1.47482 1.24288 0.77578 0.80247 0.86746 1.90597 1.34989 1.71730 1.44868 1.19966 1.02103 0.91650 0.94247 1.19453 0.95946 0.93739 1.11022 1.20759 0.98812 0.92977 0.97632 1.20757 0.97877 0.96898 1.10131 1.20999 0.95549 0.97977 0.98442 1.21295 1.00401 0.94245 1.05058 1.17703 0.90513 0.93044 0.89149 1.19579 1.18496 0.94205 1.19520 0.92225 1.26544 0.98664 0.97766 0.94361 1.69846 1.32233 1.22878 1.19589 0.85483 0.78183 0.78819 0.78969 1.18497 1.18040 1.19763 1.22875 1.03877 0.93335 0.95500 1.22385 1.04625 0.97246 0.77908 1.46308 1.63465 1.16010 1.12539 1.21219 0.76768 0.83307 0.89415 1.90784 1.57090 1.72833 1.24035 0.93521 0.89899 0.88895 0.93416 0.88771 0.85780 0.88730 0.85994 0.86043 0.87153 0.88308 0.90099 0.89415 0.84962 0.87509 0.88086 0.74550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.36 71.98 0.60 -1.56 16 2 C -0.09 -1.94 0.72 -52.19 -0.04 -1.98 16 3 C 0.08 2.30 4.28 71.98 0.31 2.61 16 4 O -0.35 -13.36 8.67 -46.99 -0.41 -13.77 16 5 C 0.47 20.58 7.59 71.24 0.54 21.12 16 6 O -0.53 -26.60 15.78 21.98 0.35 -26.26 16 7 C -0.04 -1.86 5.29 29.10 0.15 -1.70 16 8 C -0.20 -10.08 4.43 -19.40 -0.09 -10.17 16 9 C -0.08 -3.80 9.66 22.22 0.21 -3.59 16 10 C -0.24 -10.71 10.05 22.46 0.23 -10.48 16 11 C -0.11 -5.47 10.02 22.22 0.22 -5.24 16 12 C -0.19 -10.70 8.69 22.73 0.20 -10.50 16 13 C 0.10 5.60 5.56 -21.29 -0.12 5.49 16 14 C -0.49 -28.31 8.14 23.46 0.19 -28.12 16 15 H 0.06 3.51 6.68 -2.91 -0.02 3.49 16 16 C 0.04 2.27 5.16 85.26 0.44 2.71 16 17 N -0.82 -44.94 10.97 21.83 0.24 -44.70 16 18 Si 0.96 42.28 29.59 68.60 2.03 44.31 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 22 C -0.12 -1.18 6.23 31.65 0.20 -0.99 16 23 C 0.10 0.76 7.78 86.83 0.68 1.43 16 24 N -0.73 -12.35 6.24 -459.80 -2.87 -15.22 16 25 C 0.51 13.95 7.18 87.90 0.63 14.58 16 26 O -0.57 -22.75 17.15 7.91 0.14 -22.61 16 27 H 0.05 1.10 7.66 -2.39 -0.02 1.08 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.59 8.13 -2.38 -0.02 1.57 16 31 H 0.09 2.41 8.13 -2.39 -0.02 2.39 16 32 H 0.12 4.37 8.05 -2.39 -0.02 4.35 16 33 H 0.09 4.39 7.06 -2.38 -0.02 4.37 16 34 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.10 5.78 6.22 -2.91 -0.02 5.76 16 38 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 39 H 0.09 0.92 7.91 -2.39 -0.02 0.90 16 40 H 0.13 0.47 7.90 -2.38 -0.02 0.45 16 41 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.42 6.07 8.96 -92.71 -0.83 5.24 16 Total: -1.00 -80.56 360.61 4.04 -76.52 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.20 Total: 28.12 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.36 Total: -26.40 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -2.63 Total: -59.92 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: 0.08 Total: -62.63 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -80.56 4.04 -76.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853177277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.393 kcal (2) G-P(sol) polarization free energy of solvation -80.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds