Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 110.43194 * 2 1 4 4 O 1.45195 * 109.47233 * 59.29753 * 3 2 1 5 5 C 1.34227 * 117.00035 * 179.97438 * 4 3 2 6 6 O 1.20823 * 119.99892 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00313 * 180.02562 * 5 4 3 8 8 C 1.50699 * 109.47357 * 180.02562 * 7 5 4 9 9 C 1.37640 * 120.12342 * 265.00068 * 8 7 5 10 10 C 1.38618 * 120.24795 * 179.97438 * 9 8 7 11 11 C 1.38666 * 120.49562 * 359.97438 * 10 9 8 12 12 C 1.37592 * 120.25360 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.13175 * 85.25071 * 8 7 5 14 14 C 1.41398 * 120.24131 * 0.02562 * 13 8 7 15 15 H 1.08002 * 120.00003 * 334.27023 * 14 13 8 16 16 C 1.39944 * 119.99914 * 154.27026 * 14 13 8 17 17 N 1.30818 * 119.99816 * 343.67071 * 16 14 13 18 18 Si 1.86800 * 119.99967 * 163.67619 * 16 14 13 19 19 H 1.48499 * 109.47368 * 59.99686 * 18 16 14 20 20 H 1.48508 * 109.46729 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47082 * 299.99622 * 18 16 14 22 22 C 1.54623 * 110.48734 * 237.45588 * 2 1 3 23 23 C 1.54471 * 101.76660 * 216.39266 * 22 2 1 24 24 N 1.46771 * 105.47457 * 25.41760 * 23 22 2 25 25 C 1.34741 * 111.34415 * 343.01701 * 24 23 22 26 26 O 1.21283 * 125.11639 * 180.37238 * 25 24 23 27 27 H 1.09000 * 109.46946 * 60.70300 * 1 2 3 28 28 H 1.08999 * 109.46972 * 180.70095 * 1 2 3 29 29 H 1.08995 * 109.46957 * 300.70313 * 1 2 3 30 30 H 1.08998 * 109.47164 * 299.29420 * 3 2 1 31 31 H 1.09001 * 109.46911 * 179.29724 * 3 2 1 32 32 H 1.08997 * 109.47115 * 59.99912 * 7 5 4 33 33 H 1.09004 * 109.46921 * 300.00048 * 7 5 4 34 34 H 1.07994 * 119.87924 * 359.97086 * 9 8 7 35 35 H 1.07996 * 119.75082 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.86961 * 180.02562 * 11 10 9 37 37 H 1.07992 * 120.12750 * 179.97438 * 12 11 10 38 38 H 0.97001 * 119.99886 * 180.02562 * 17 16 14 39 39 H 1.08998 * 110.97065 * 334.51213 * 22 2 1 40 40 H 1.09005 * 110.97025 * 98.27117 * 22 2 1 41 41 H 1.08999 * 110.24726 * 144.41557 * 23 22 2 42 42 H 1.09002 * 110.24973 * 266.33100 * 23 22 2 43 43 H 0.97000 * 124.34709 * 162.98642 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 8 1.5782 2.1313 1.1770 5 6 1.9591 3.4095 1.3285 6 8 2.6752 3.9281 0.5051 7 6 1.4944 4.1974 2.5262 8 6 2.0574 5.5936 2.4583 9 6 3.2237 5.9011 3.1213 10 6 3.7442 7.1844 3.0602 11 6 3.0983 8.1717 2.3317 12 6 1.9311 7.8869 1.6610 13 6 1.3902 6.5891 1.7212 14 6 0.1882 6.2863 1.0408 15 1 -0.0131 5.2732 0.7251 16 6 -0.7406 7.2992 0.7766 17 7 -0.6670 8.4374 1.4172 18 14 -2.0854 7.0259 -0.4908 19 1 -2.9224 5.8691 -0.0828 20 1 -2.9331 8.2417 -0.5830 21 1 -1.4700 6.7494 -1.8138 22 6 2.0713 -0.7792 -1.2210 23 6 3.3218 -1.4651 -0.6279 24 7 3.0601 -1.5793 0.8118 25 6 2.0595 -0.7622 1.1946 26 8 1.6436 -0.6525 2.3287 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 1.7199 1.9498 -0.8962 31 1 3.1540 1.4155 0.0126 32 1 1.8396 3.7099 3.4379 33 1 0.4054 4.2449 2.5296 34 1 3.7353 5.1398 3.6914 35 1 4.6601 7.4167 3.5832 36 1 3.5130 9.1681 2.2906 37 1 1.4295 8.6576 1.0946 38 1 -1.3110 9.1394 1.2343 39 1 1.3472 -1.5179 -1.5645 40 1 2.3450 -0.0991 -2.0277 41 1 3.4536 -2.4540 -1.0669 42 1 4.2069 -0.8537 -0.8044 43 1 3.5450 -2.1680 1.4111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853177279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -110.729243 kcal Electronic energy + Delta-G solvation = -26614.439201 eV Core-core repulsion = 22816.884806 eV Total energy + Delta-G solvation = -3797.554395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93482 -39.65516 -37.60491 -36.62690 -35.81982 -33.63703 -33.56641 -31.78113 -29.48217 -29.06508 -27.67738 -26.46259 -25.10632 -24.59881 -22.20079 -21.16740 -20.90966 -19.33526 -19.23014 -17.48758 -17.17900 -17.04675 -16.55172 -16.17927 -15.40614 -15.17229 -14.85332 -14.46923 -14.22989 -14.00922 -13.84276 -13.59858 -13.50588 -13.10649 -12.66374 -12.55365 -12.32804 -12.25618 -11.90825 -11.78181 -11.56419 -11.29816 -11.21880 -11.12286 -11.05098 -10.98100 -10.71030 -10.41358 -10.29005 -9.74659 -9.69980 -9.49715 -9.38962 -9.31906 -9.16566 -7.34617 -7.32094 -6.74972 -4.36615 2.48357 2.71189 2.89586 2.98822 3.06483 3.09613 3.12157 3.27477 3.32086 3.93517 4.04885 4.17247 4.39643 4.64670 4.69959 4.78740 5.01045 5.13775 5.36038 5.40197 5.42400 5.54984 5.58807 5.73319 5.74523 5.82400 6.02539 6.11387 6.19327 6.29248 6.45903 6.50776 6.60443 6.75873 6.78975 6.99297 7.07553 7.28079 7.40322 7.62835 7.90376 8.03935 8.11528 8.13682 8.29504 8.50208 8.63408 8.89319 8.98973 10.19272 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.003919 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.217376 B = 7142.789533 C = 8433.262416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C 0.086 3.914 4 O -0.354 6.354 5 C 0.460 3.540 6 O -0.496 6.496 7 C -0.042 4.042 8 C -0.193 4.193 9 C -0.077 4.077 10 C -0.240 4.240 11 C -0.104 4.104 12 C -0.159 4.159 13 C 0.131 3.869 14 C -0.459 4.459 15 H 0.074 0.926 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.904 3.096 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.125 4.125 23 C 0.100 3.900 24 N -0.740 5.740 25 C 0.529 3.471 26 O -0.507 6.507 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.281 0.719 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.085 -17.138 -6.153 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.099 4.099 3 C 0.011 3.989 4 O -0.272 6.272 5 C 0.303 3.697 6 O -0.381 6.381 7 C -0.079 4.079 8 C -0.195 4.195 9 C -0.095 4.095 10 C -0.259 4.259 11 C -0.123 4.123 12 C -0.178 4.178 13 C 0.128 3.872 14 C -0.488 4.488 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.418 5.418 18 Si 0.728 3.272 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.163 4.163 23 C -0.024 4.024 24 N -0.397 5.397 25 C 0.314 3.686 26 O -0.380 6.380 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.883 -16.621 -5.859 17.858 hybrid contribution -0.140 -0.299 -0.547 0.639 sum 2.743 -16.920 -6.407 18.299 Atomic orbital electron populations 1.21674 0.90728 1.02352 1.04033 1.21452 0.99222 0.94304 0.94879 1.22673 0.98660 0.89111 0.88454 1.86629 1.69612 1.26945 1.44054 1.24506 0.77685 0.79119 0.88357 1.90629 1.34517 1.69638 1.43336 1.19982 1.03271 0.92361 0.92283 1.19062 1.00118 0.93221 1.07094 1.20332 0.94968 0.95490 0.98718 1.20312 1.02112 0.94341 1.09170 1.20697 0.96276 0.96890 0.98412 1.21291 0.95466 0.98028 1.03012 1.17340 0.91136 0.90805 0.87871 1.19462 1.01435 0.95501 1.32401 0.90818 1.25877 0.98700 0.94417 0.94966 1.69807 1.33385 1.04990 1.33594 0.86432 0.80229 0.78781 0.81731 1.18882 1.20265 1.18869 1.22740 0.97145 0.99654 0.96765 1.22065 0.98285 1.01595 0.80496 1.46288 1.38050 1.44809 1.10568 1.20672 0.79335 0.79118 0.89499 1.90763 1.60710 1.65040 1.21508 0.91359 0.92314 0.90211 0.90059 0.91463 0.89334 0.87389 0.89582 0.89538 0.89473 0.86454 0.90805 0.88951 0.88571 0.90064 0.90924 0.75231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.27 37.16 0.31 -1.14 16 2 C -0.09 -1.07 0.72 -154.52 -0.11 -1.18 16 3 C 0.09 1.22 4.30 37.16 0.16 1.38 16 4 O -0.35 -6.45 9.30 -39.26 -0.36 -6.81 16 5 C 0.46 9.65 7.61 36.01 0.27 9.93 16 6 O -0.50 -11.71 15.78 -18.75 -0.30 -12.01 16 7 C -0.04 -0.88 5.30 -29.03 -0.15 -1.03 16 8 C -0.19 -4.75 4.43 -103.91 -0.46 -5.21 16 9 C -0.08 -1.80 9.66 -39.66 -0.38 -2.18 16 10 C -0.24 -5.61 10.05 -39.28 -0.39 -6.01 16 11 C -0.10 -2.54 10.02 -39.66 -0.40 -2.94 16 12 C -0.16 -4.23 8.68 -38.88 -0.34 -4.57 16 13 C 0.13 3.51 5.56 -106.82 -0.59 2.92 16 14 C -0.46 -12.09 8.15 -37.74 -0.31 -12.40 16 15 H 0.07 1.89 6.68 -52.49 -0.35 1.54 16 16 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 17 N -0.79 -20.41 10.97 55.55 0.61 -19.80 16 18 Si 0.90 18.76 29.59 -169.99 -5.03 13.73 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.13 -0.85 6.23 -25.11 -0.16 -1.00 16 23 C 0.10 0.61 7.78 -3.12 -0.02 0.59 16 24 N -0.74 -6.75 6.25 -59.12 -0.37 -7.12 16 25 C 0.53 7.00 6.99 -10.72 -0.07 6.92 16 26 O -0.51 -8.94 17.82 5.55 0.10 -8.84 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.09 7.71 -51.93 -0.40 0.69 16 30 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 31 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 32 H 0.09 1.65 8.05 -51.93 -0.42 1.23 16 33 H 0.11 2.26 7.04 -51.93 -0.37 1.89 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.09 0.49 7.91 -51.93 -0.41 0.08 16 40 H 0.10 0.54 7.90 -51.93 -0.41 0.12 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.41 3.08 8.96 -40.82 -0.37 2.72 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -33.03 361.71 -8.63 -41.66 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.99 Total: 7.79 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -2.74 Total: -14.05 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.24 Total: -26.92 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.56 Total: -27.66 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.03 -8.63 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853177279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.071 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds