Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 110.43194 * 2 1 4 4 O 1.45195 * 109.47233 * 59.29753 * 3 2 1 5 5 C 1.34227 * 117.00035 * 179.97438 * 4 3 2 6 6 O 1.20823 * 119.99892 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00313 * 180.02562 * 5 4 3 8 8 C 1.50699 * 109.47357 * 180.02562 * 7 5 4 9 9 C 1.37640 * 120.12342 * 265.00068 * 8 7 5 10 10 C 1.38618 * 120.24795 * 179.97438 * 9 8 7 11 11 C 1.38666 * 120.49562 * 359.97438 * 10 9 8 12 12 C 1.37592 * 120.25360 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.13175 * 85.25071 * 8 7 5 14 14 C 1.41398 * 120.24131 * 0.02562 * 13 8 7 15 15 H 1.08002 * 120.00003 * 334.27023 * 14 13 8 16 16 C 1.39944 * 119.99914 * 154.27026 * 14 13 8 17 17 N 1.30818 * 119.99816 * 343.67071 * 16 14 13 18 18 Si 1.86800 * 119.99967 * 163.67619 * 16 14 13 19 19 H 1.48499 * 109.47368 * 59.99686 * 18 16 14 20 20 H 1.48508 * 109.46729 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47082 * 299.99622 * 18 16 14 22 22 C 1.54623 * 110.48734 * 237.45588 * 2 1 3 23 23 C 1.54471 * 101.76660 * 216.39266 * 22 2 1 24 24 N 1.46771 * 105.47457 * 25.41760 * 23 22 2 25 25 C 1.34741 * 111.34415 * 343.01701 * 24 23 22 26 26 O 1.21283 * 125.11639 * 180.37238 * 25 24 23 27 27 H 1.09000 * 109.46946 * 60.70300 * 1 2 3 28 28 H 1.08999 * 109.46972 * 180.70095 * 1 2 3 29 29 H 1.08995 * 109.46957 * 300.70313 * 1 2 3 30 30 H 1.08998 * 109.47164 * 299.29420 * 3 2 1 31 31 H 1.09001 * 109.46911 * 179.29724 * 3 2 1 32 32 H 1.08997 * 109.47115 * 59.99912 * 7 5 4 33 33 H 1.09004 * 109.46921 * 300.00048 * 7 5 4 34 34 H 1.07994 * 119.87924 * 359.97086 * 9 8 7 35 35 H 1.07996 * 119.75082 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.86961 * 180.02562 * 11 10 9 37 37 H 1.07992 * 120.12750 * 179.97438 * 12 11 10 38 38 H 0.97001 * 119.99886 * 180.02562 * 17 16 14 39 39 H 1.08998 * 110.97065 * 334.51213 * 22 2 1 40 40 H 1.09005 * 110.97025 * 98.27117 * 22 2 1 41 41 H 1.08999 * 110.24726 * 144.41557 * 23 22 2 42 42 H 1.09002 * 110.24973 * 266.33100 * 23 22 2 43 43 H 0.97000 * 124.34709 * 162.98642 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 8 1.5782 2.1313 1.1770 5 6 1.9591 3.4095 1.3285 6 8 2.6752 3.9281 0.5051 7 6 1.4944 4.1974 2.5262 8 6 2.0574 5.5936 2.4583 9 6 3.2237 5.9011 3.1213 10 6 3.7442 7.1844 3.0602 11 6 3.0983 8.1717 2.3317 12 6 1.9311 7.8869 1.6610 13 6 1.3902 6.5891 1.7212 14 6 0.1882 6.2863 1.0408 15 1 -0.0131 5.2732 0.7251 16 6 -0.7406 7.2992 0.7766 17 7 -0.6670 8.4374 1.4172 18 14 -2.0854 7.0259 -0.4908 19 1 -2.9224 5.8691 -0.0828 20 1 -2.9331 8.2417 -0.5830 21 1 -1.4700 6.7494 -1.8138 22 6 2.0713 -0.7792 -1.2210 23 6 3.3218 -1.4651 -0.6279 24 7 3.0601 -1.5793 0.8118 25 6 2.0595 -0.7622 1.1946 26 8 1.6436 -0.6525 2.3287 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 1.7199 1.9498 -0.8962 31 1 3.1540 1.4155 0.0126 32 1 1.8396 3.7099 3.4379 33 1 0.4054 4.2449 2.5296 34 1 3.7353 5.1398 3.6914 35 1 4.6601 7.4167 3.5832 36 1 3.5130 9.1681 2.2906 37 1 1.4295 8.6576 1.0946 38 1 -1.3110 9.1394 1.2343 39 1 1.3472 -1.5179 -1.5645 40 1 2.3450 -0.0991 -2.0277 41 1 3.4536 -2.4540 -1.0669 42 1 4.2069 -0.8537 -0.8044 43 1 3.5450 -2.1680 1.4111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853177279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -131.175058 kcal Electronic energy + Delta-G solvation = -26615.325798 eV Core-core repulsion = 22816.884806 eV Total energy + Delta-G solvation = -3798.440992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96525 -41.11616 -39.41678 -37.73223 -37.23042 -35.53404 -34.50874 -33.56480 -31.39655 -29.79464 -29.17583 -27.82259 -26.88733 -25.58045 -23.01348 -22.86882 -22.63685 -21.06138 -20.20677 -19.09693 -18.65285 -18.25768 -17.75406 -17.58168 -17.15854 -16.41539 -16.16509 -16.00263 -15.51745 -15.45313 -15.06222 -14.78889 -14.59919 -14.41578 -14.29385 -13.75934 -13.56186 -13.47048 -13.34600 -13.12454 -12.95127 -12.82863 -12.76331 -12.61518 -12.53325 -12.16881 -12.12728 -12.06568 -11.60844 -11.39175 -11.36299 -11.25121 -11.04310 -10.76078 -10.07306 -9.27147 -9.24131 -8.62373 -6.33831 0.90771 1.08143 1.33256 1.36459 1.47110 1.48814 1.54262 1.85695 2.19967 2.38365 2.75881 3.22253 3.45104 3.55945 3.75592 3.91542 3.98164 4.08303 4.25120 4.30317 4.34685 4.44282 4.53619 4.54400 4.67667 4.73325 4.74375 4.78981 4.82948 4.97192 5.05067 5.10568 5.16307 5.26581 5.33155 5.42373 5.50143 5.72930 5.86562 5.99840 6.00016 6.11420 6.18166 6.37834 6.68654 6.90482 6.95105 7.05775 7.24597 8.34228 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.003919 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.217376 B = 7142.789533 C = 8433.262416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C 0.078 3.922 4 O -0.357 6.357 5 C 0.468 3.532 6 O -0.528 6.528 7 C -0.043 4.043 8 C -0.202 4.202 9 C -0.087 4.087 10 C -0.241 4.241 11 C -0.111 4.111 12 C -0.190 4.190 13 C 0.100 3.900 14 C -0.487 4.487 15 H 0.070 0.930 16 C 0.039 3.961 17 N -0.822 5.822 18 Si 0.972 3.028 19 H -0.256 1.256 20 H -0.265 1.265 21 H -0.265 1.265 22 C -0.116 4.116 23 C 0.095 3.905 24 N -0.728 5.728 25 C 0.516 3.484 26 O -0.565 6.565 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.288 0.712 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 -19.166 -7.617 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.098 4.098 3 C 0.003 3.997 4 O -0.274 6.274 5 C 0.313 3.687 6 O -0.417 6.417 7 C -0.080 4.080 8 C -0.203 4.203 9 C -0.105 4.105 10 C -0.260 4.260 11 C -0.130 4.130 12 C -0.210 4.210 13 C 0.098 3.902 14 C -0.516 4.516 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.448 5.448 18 Si 0.792 3.208 19 H -0.180 1.180 20 H -0.189 1.189 21 H -0.190 1.190 22 C -0.153 4.153 23 C -0.028 4.028 24 N -0.383 5.383 25 C 0.301 3.699 26 O -0.443 6.443 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.452 -18.691 -7.342 20.376 hybrid contribution -0.189 0.247 -0.061 0.317 sum 3.263 -18.444 -7.403 20.140 Atomic orbital electron populations 1.21675 0.90877 1.03153 1.03076 1.21537 0.99217 0.92533 0.96534 1.23066 0.99059 0.90523 0.87008 1.86613 1.69301 1.25597 1.45929 1.24257 0.76943 0.79857 0.87679 1.90606 1.36153 1.70548 1.44357 1.19963 1.02978 0.91307 0.93774 1.19425 1.00328 0.94319 1.06260 1.20735 0.94732 0.96434 0.98572 1.20716 1.02875 0.94003 1.08434 1.20991 0.95631 0.98410 0.97924 1.21308 0.96894 0.98076 1.04685 1.17708 0.91992 0.91603 0.88890 1.19627 1.02216 0.95887 1.33876 0.91198 1.26677 1.00743 0.93875 0.96379 1.69861 1.34502 1.05799 1.34664 0.85407 0.77392 0.79284 0.78668 1.18000 1.18935 1.18957 1.22857 0.97658 0.99766 0.95023 1.22391 0.98202 1.03831 0.78367 1.46351 1.36378 1.43292 1.12274 1.21096 0.79955 0.79626 0.89174 1.90725 1.62772 1.67099 1.23687 0.89839 0.90605 0.93661 0.89461 0.91205 0.86857 0.87742 0.86758 0.86424 0.87251 0.88159 0.90141 0.86620 0.86835 0.86462 0.90054 0.74393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.27 71.99 0.60 -2.17 16 2 C -0.09 -1.98 0.72 -52.19 -0.04 -2.02 16 3 C 0.08 2.15 4.30 71.98 0.31 2.46 16 4 O -0.36 -13.12 9.30 -51.38 -0.48 -13.60 16 5 C 0.47 19.86 7.61 71.24 0.54 20.41 16 6 O -0.53 -25.28 15.78 21.97 0.35 -24.93 16 7 C -0.04 -1.84 5.30 29.10 0.15 -1.69 16 8 C -0.20 -10.02 4.43 -19.40 -0.09 -10.11 16 9 C -0.09 -3.99 9.66 22.22 0.21 -3.78 16 10 C -0.24 -10.99 10.05 22.46 0.23 -10.76 16 11 C -0.11 -5.43 10.02 22.22 0.22 -5.21 16 12 C -0.19 -10.46 8.68 22.73 0.20 -10.26 16 13 C 0.10 5.55 5.56 -21.29 -0.12 5.43 16 14 C -0.49 -26.50 8.15 23.46 0.19 -26.31 16 15 H 0.07 3.72 6.68 -2.91 -0.02 3.70 16 16 C 0.04 1.97 5.16 85.26 0.44 2.41 16 17 N -0.82 -43.51 10.97 21.83 0.24 -43.27 16 18 Si 0.97 38.84 29.59 68.60 2.03 40.87 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 C -0.12 -1.14 6.23 31.65 0.20 -0.94 16 23 C 0.10 0.80 7.78 86.83 0.68 1.47 16 24 N -0.73 -11.69 6.25 -459.37 -2.87 -14.56 16 25 C 0.52 13.23 6.99 87.85 0.61 13.84 16 26 O -0.56 -20.31 17.82 -3.04 -0.05 -20.37 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.27 7.71 -2.39 -0.02 1.25 16 30 H 0.09 2.30 8.13 -2.39 -0.02 2.28 16 31 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 32 H 0.11 4.18 8.05 -2.39 -0.02 4.16 16 33 H 0.10 4.51 7.04 -2.38 -0.02 4.49 16 34 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.10 5.73 6.22 -2.91 -0.02 5.71 16 38 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 39 H 0.12 0.67 7.91 -2.39 -0.02 0.65 16 40 H 0.11 0.79 7.90 -2.38 -0.02 0.77 16 41 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.42 5.48 8.96 -92.71 -0.83 4.65 16 Total: -1.00 -75.19 361.71 3.75 -71.43 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.20 Total: 31.67 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.34 Total: -27.24 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -2.63 Total: -57.84 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -0.19 Total: -58.90 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -75.19 3.75 -71.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853177279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.742 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds