Wall clock time and date at job start Tue Mar 31 2020 11:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48510 * 109.46957 * 240.00161 * 3 2 1 5 5 H 1.48493 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47091 * 120.00414 * 3 2 1 7 7 C 1.37880 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00439 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.53579 * 300.10635 * 9 7 2 11 11 C 1.53130 * 109.49793 * 60.20099 * 9 7 2 12 12 C 1.53112 * 109.15757 * 177.59744 * 11 9 7 13 13 C 1.53044 * 109.27943 * 302.34456 * 12 11 9 14 14 N 1.46842 * 109.52354 * 59.18143 * 13 12 11 15 15 C 1.46898 * 111.00141 * 174.16029 * 14 13 12 16 16 N 1.46493 * 109.47079 * 294.20948 * 15 14 13 17 17 C 1.35019 * 125.92982 * 95.00372 * 16 15 14 18 18 C 1.35111 * 107.97448 * 179.97438 * 17 16 15 19 19 C 1.40830 * 107.84645 * 359.97438 * 18 17 16 20 20 C 1.48452 * 126.03788 * 180.02562 * 19 18 17 21 21 C 1.39337 * 122.76108 * 184.73436 * 20 19 18 22 22 C 1.33083 * 114.91462 * 180.27104 * 21 20 19 23 23 S 1.75825 * 109.91154 * 359.97438 * 22 21 20 24 24 C 1.34515 * 122.75988 * 5.02291 * 20 19 18 25 25 N 1.31610 * 107.92612 * 0.26238 * 19 18 17 26 26 C 1.46849 * 111.19806 * 298.26117 * 14 13 12 27 27 H 0.97003 * 120.00093 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.51961 * 297.50233 * 11 9 7 29 29 H 1.09003 * 109.51849 * 57.62768 * 11 9 7 30 30 H 1.08993 * 109.50610 * 62.28666 * 12 11 9 31 31 H 1.08996 * 109.50236 * 182.36750 * 12 11 9 32 32 H 1.08997 * 109.46169 * 299.16798 * 13 12 11 33 33 H 1.09001 * 109.46464 * 179.19897 * 13 12 11 34 34 H 1.09003 * 109.46956 * 174.21268 * 15 14 13 35 35 H 1.09001 * 109.46981 * 54.21241 * 15 14 13 36 36 H 1.08004 * 126.01428 * 0.02562 * 17 16 15 37 37 H 1.08007 * 126.07261 * 180.02562 * 18 17 16 38 38 H 1.08003 * 122.54586 * 0.26339 * 21 20 19 39 39 H 1.07995 * 125.04958 * 180.02562 * 22 21 20 40 40 H 1.08003 * 125.22300 * 359.75322 * 24 20 19 41 41 H 1.09001 * 109.46626 * 181.75613 * 26 14 13 42 42 H 1.09003 * 109.45953 * 301.72285 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5575 0.8884 11 6 0.3737 -2.5829 -1.2528 12 6 -0.3419 -3.9363 -1.2755 13 6 0.6981 -5.0585 -1.2391 14 7 1.5111 -4.9349 -0.0225 15 6 2.4282 -6.0740 0.1159 16 7 1.6553 -7.2999 0.3300 17 6 1.2783 -8.1760 -0.6257 18 6 0.5850 -9.1707 -0.0295 19 6 0.5344 -8.8945 1.3505 20 6 -0.1298 -9.7277 2.3841 21 6 -0.2211 -9.3414 3.7198 22 6 -0.8441 -10.2095 4.5131 23 16 -1.3651 -11.6059 3.5804 24 6 -0.6880 -10.9203 2.1094 25 7 1.1754 -7.7646 1.5613 26 6 2.2448 -3.6630 -0.0011 27 1 -0.4850 0.8401 0.0004 28 1 -0.3642 -1.7809 -1.2348 29 1 0.9972 -2.4845 -2.1415 30 1 -0.9951 -4.0172 -0.4067 31 1 -0.9354 -4.0189 -2.1859 32 1 1.3422 -4.9852 -2.1153 33 1 0.1914 -6.0236 -1.2407 34 1 3.0885 -5.9075 0.9670 35 1 3.0234 -6.1736 -0.7918 36 1 1.4938 -8.0961 -1.6810 37 1 0.1481 -10.0260 -0.5235 38 1 0.1832 -8.4083 4.0837 39 1 -1.0064 -10.0757 5.5724 40 1 -0.7161 -11.3854 1.1351 41 1 2.8614 -3.6143 0.8964 42 1 2.8817 -3.5963 -0.8832 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853523154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:13 Heat of formation + Delta-G solvation = 116.813894 kcal Electronic energy + Delta-G solvation = -23483.385447 eV Core-core repulsion = 20170.743685 eV Total energy + Delta-G solvation = -3312.641762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13196 -38.39408 -37.69911 -34.22321 -32.44814 -31.12505 -30.15175 -29.89959 -29.24199 -25.78619 -25.03720 -24.14629 -22.26692 -21.63399 -20.79565 -20.72959 -18.74307 -18.62620 -17.68863 -16.90945 -16.45644 -15.64433 -15.31167 -14.61848 -14.50618 -14.06591 -13.92942 -13.74301 -13.46064 -13.18680 -13.01518 -12.81568 -12.55576 -12.41548 -12.37747 -12.25960 -11.93101 -11.51672 -11.03569 -10.97416 -10.78770 -10.75813 -10.53809 -10.22707 -9.93178 -9.85929 -9.56264 -9.22669 -8.88542 -8.79563 -8.66283 -8.36164 -8.17564 -7.88068 -6.01701 -4.08745 0.75159 1.47878 1.78740 1.85718 2.31363 2.60090 3.29427 3.34733 3.36491 3.43339 4.22532 4.43137 4.56337 4.65075 4.90287 4.91495 5.21224 5.28325 5.29114 5.37518 5.55023 5.57927 5.66288 5.68085 5.88996 5.91807 5.92962 6.09454 6.20316 6.22065 6.37124 6.37932 6.60094 6.62207 6.65326 6.82076 6.97575 7.15222 7.24417 7.49407 7.57307 7.70790 7.82493 8.00631 8.10835 8.40136 8.94732 9.55863 11.04338 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.002523 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.199596 B =11096.596018 C =11552.632561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.057 3.943 10 H 0.036 0.964 11 C -0.111 4.111 12 C -0.115 4.115 13 C 0.060 3.940 14 N -0.549 5.549 15 C 0.297 3.703 16 N -0.350 5.350 17 C 0.055 3.945 18 C -0.262 4.262 19 C 0.114 3.886 20 C -0.018 4.018 21 C -0.111 4.111 22 C -0.215 4.215 23 S 0.098 5.902 24 C -0.195 4.195 25 N -0.260 5.260 26 C 0.073 3.927 27 H 0.261 0.739 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.170 0.830 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.065 0.935 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 -21.976 1.115 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.054 0.946 11 C -0.149 4.149 12 C -0.153 4.153 13 C -0.068 4.068 14 N -0.275 5.275 15 C 0.087 3.913 16 N -0.134 5.134 17 C -0.090 4.090 18 C -0.291 4.291 19 C -0.053 4.053 20 C -0.032 4.032 21 C -0.141 4.141 22 C -0.350 4.350 23 S 0.361 5.639 24 C -0.333 4.333 25 N -0.083 5.083 26 C -0.053 4.053 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.083 0.917 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.997 -22.151 2.701 22.337 hybrid contribution 1.443 1.705 -1.797 2.867 sum 0.446 -20.446 0.903 20.471 Atomic orbital electron populations 1.69878 1.05877 1.26568 1.50233 1.24933 0.94833 0.99006 0.95002 0.86667 0.79601 0.83195 0.78565 1.20359 1.21287 1.20260 1.21063 0.92770 0.90515 1.51286 0.92798 1.18658 0.92524 0.89981 0.95031 0.94611 1.21672 1.00100 0.94687 0.98442 1.21645 0.97073 0.96213 1.00370 1.22108 0.95863 0.99366 0.89443 1.61876 1.24487 1.02139 1.38976 1.22124 0.88648 0.78803 1.01767 1.48752 1.41991 1.18478 1.04140 1.22432 0.99222 0.91505 0.95880 1.21314 1.11173 1.03698 0.92954 1.20200 0.99083 0.93478 0.92507 1.16867 1.00748 0.93522 0.92080 1.20240 1.00520 1.01289 0.92056 1.25461 1.07460 0.98281 1.03838 1.84150 1.58028 1.22253 0.99492 1.25604 1.06104 0.99322 1.02315 1.77604 1.15825 1.11345 1.03494 1.22313 0.96614 0.87147 0.99232 0.92904 0.88957 0.95034 0.92090 0.93358 0.95607 0.92366 0.87708 0.91705 0.81255 0.83787 0.83457 0.81649 0.81452 0.91697 0.95658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 11.36 55.43 0.63 -24.47 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.85 8.56 -34.44 -0.29 -14.14 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.19 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.57 5.03 -26.61 -0.13 -2.71 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 13 C 0.06 1.03 5.30 -3.83 -0.02 1.01 16 14 N -0.55 -9.88 4.79 -238.58 -1.14 -11.03 16 15 C 0.30 4.35 6.17 -63.33 -0.39 3.96 16 16 N -0.35 -5.22 3.47 -64.42 -0.22 -5.45 16 17 C 0.06 0.69 9.90 -17.26 -0.17 0.52 16 18 C -0.26 -3.23 10.33 -39.71 -0.41 -3.64 16 19 C 0.11 1.66 7.04 -82.77 -0.58 1.07 16 20 C -0.02 -0.23 5.79 -106.60 -0.62 -0.84 16 21 C -0.11 -1.34 9.92 -40.97 -0.41 -1.75 16 22 C -0.22 -2.11 11.19 28.94 0.32 -1.79 16 23 S 0.10 0.86 23.33 -107.50 -2.51 -1.64 16 24 C -0.20 -1.98 10.73 29.42 0.32 -1.67 16 25 N -0.26 -4.31 12.49 33.43 0.42 -3.90 16 26 C 0.07 1.47 4.68 -3.84 -0.02 1.46 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.94 6.29 -51.93 -0.33 0.61 16 34 H 0.10 1.50 7.99 -51.93 -0.41 1.09 16 35 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 36 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 37 H 0.14 1.36 7.76 -52.48 -0.41 0.96 16 38 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.17 1.33 7.69 -52.48 -0.40 0.93 16 41 H 0.06 1.28 8.02 -51.93 -0.42 0.86 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -30.09 355.72 -11.41 -41.50 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.06 Total: 1.79 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.87 Total: -18.11 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.32 Total: -44.85 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.09 -11.41 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.314 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds