Wall clock time and date at job start Tue Mar 31 2020 11:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48510 * 109.46957 * 240.00161 * 3 2 1 5 5 H 1.48493 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47091 * 120.00414 * 3 2 1 7 7 C 1.37880 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00439 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.53579 * 300.10635 * 9 7 2 11 11 C 1.53130 * 109.49793 * 60.20099 * 9 7 2 12 12 C 1.53112 * 109.15757 * 177.59744 * 11 9 7 13 13 C 1.53044 * 109.27943 * 302.34456 * 12 11 9 14 14 N 1.46842 * 109.52354 * 59.18143 * 13 12 11 15 15 C 1.46898 * 111.00141 * 174.16029 * 14 13 12 16 16 N 1.46493 * 109.47079 * 294.20948 * 15 14 13 17 17 C 1.35019 * 125.92982 * 95.00372 * 16 15 14 18 18 C 1.35111 * 107.97448 * 179.97438 * 17 16 15 19 19 C 1.40830 * 107.84645 * 359.97438 * 18 17 16 20 20 C 1.48452 * 126.03788 * 180.02562 * 19 18 17 21 21 C 1.39337 * 122.76108 * 184.73436 * 20 19 18 22 22 C 1.33083 * 114.91462 * 180.27104 * 21 20 19 23 23 S 1.75825 * 109.91154 * 359.97438 * 22 21 20 24 24 C 1.34515 * 122.75988 * 5.02291 * 20 19 18 25 25 N 1.31610 * 107.92612 * 0.26238 * 19 18 17 26 26 C 1.46849 * 111.19806 * 298.26117 * 14 13 12 27 27 H 0.97003 * 120.00093 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.51961 * 297.50233 * 11 9 7 29 29 H 1.09003 * 109.51849 * 57.62768 * 11 9 7 30 30 H 1.08993 * 109.50610 * 62.28666 * 12 11 9 31 31 H 1.08996 * 109.50236 * 182.36750 * 12 11 9 32 32 H 1.08997 * 109.46169 * 299.16798 * 13 12 11 33 33 H 1.09001 * 109.46464 * 179.19897 * 13 12 11 34 34 H 1.09003 * 109.46956 * 174.21268 * 15 14 13 35 35 H 1.09001 * 109.46981 * 54.21241 * 15 14 13 36 36 H 1.08004 * 126.01428 * 0.02562 * 17 16 15 37 37 H 1.08007 * 126.07261 * 180.02562 * 18 17 16 38 38 H 1.08003 * 122.54586 * 0.26339 * 21 20 19 39 39 H 1.07995 * 125.04958 * 180.02562 * 22 21 20 40 40 H 1.08003 * 125.22300 * 359.75322 * 24 20 19 41 41 H 1.09001 * 109.46626 * 181.75613 * 26 14 13 42 42 H 1.09003 * 109.45953 * 301.72285 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5575 0.8884 11 6 0.3737 -2.5829 -1.2528 12 6 -0.3419 -3.9363 -1.2755 13 6 0.6981 -5.0585 -1.2391 14 7 1.5111 -4.9349 -0.0225 15 6 2.4282 -6.0740 0.1159 16 7 1.6553 -7.2999 0.3300 17 6 1.2783 -8.1760 -0.6257 18 6 0.5850 -9.1707 -0.0295 19 6 0.5344 -8.8945 1.3505 20 6 -0.1298 -9.7277 2.3841 21 6 -0.2211 -9.3414 3.7198 22 6 -0.8441 -10.2095 4.5131 23 16 -1.3651 -11.6059 3.5804 24 6 -0.6880 -10.9203 2.1094 25 7 1.1754 -7.7646 1.5613 26 6 2.2448 -3.6630 -0.0011 27 1 -0.4850 0.8401 0.0004 28 1 -0.3642 -1.7809 -1.2348 29 1 0.9972 -2.4845 -2.1415 30 1 -0.9951 -4.0172 -0.4067 31 1 -0.9354 -4.0189 -2.1859 32 1 1.3422 -4.9852 -2.1153 33 1 0.1914 -6.0236 -1.2407 34 1 3.0885 -5.9075 0.9670 35 1 3.0234 -6.1736 -0.7918 36 1 1.4938 -8.0961 -1.6810 37 1 0.1481 -10.0260 -0.5235 38 1 0.1832 -8.4083 4.0837 39 1 -1.0064 -10.0757 5.5724 40 1 -0.7161 -11.3854 1.1351 41 1 2.8614 -3.6143 0.8964 42 1 2.8817 -3.5963 -0.8832 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853523154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:12 Heat of formation + Delta-G solvation = 99.863726 kcal Electronic energy + Delta-G solvation = -23484.120462 eV Core-core repulsion = 20170.743685 eV Total energy + Delta-G solvation = -3313.376776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.12885 -39.82861 -38.62601 -35.86621 -34.08417 -32.41280 -31.67498 -31.06622 -30.22726 -26.97138 -26.93620 -25.11086 -23.74156 -23.18777 -21.90840 -21.67676 -20.41980 -19.52075 -18.62120 -18.43304 -17.74123 -17.10663 -16.54971 -16.22838 -15.69242 -15.33702 -15.19504 -14.98016 -14.71408 -14.41164 -14.26122 -14.03244 -13.90014 -13.74843 -13.44411 -13.24366 -13.21569 -12.91061 -12.81904 -12.59045 -12.57129 -11.92306 -11.81798 -11.78579 -11.53334 -11.44241 -11.05624 -10.80699 -10.70524 -10.40673 -9.73656 -9.59972 -9.31835 -8.95463 -8.09300 -6.24115 -0.06001 0.72818 0.88579 0.99211 1.40865 1.42194 1.43083 1.50489 1.61047 2.41953 2.49134 2.96859 3.18187 3.60499 3.79223 3.94724 4.02877 4.14367 4.18491 4.21029 4.38921 4.40461 4.52808 4.59128 4.64285 4.74319 4.80089 4.81185 4.89711 5.00221 5.01165 5.06133 5.10422 5.30663 5.34792 5.45095 5.53424 5.61489 5.65484 5.84041 6.02064 6.08937 6.14584 6.24856 6.40953 6.82207 6.88855 7.44321 8.95420 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.002523 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.199596 B =11096.596018 C =11552.632561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.058 0.942 9 C 0.054 3.946 10 H -0.013 1.013 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.069 3.931 14 N -0.571 5.571 15 C 0.301 3.699 16 N -0.364 5.364 17 C 0.059 3.941 18 C -0.267 4.267 19 C 0.108 3.892 20 C -0.052 4.052 21 C -0.139 4.139 22 C -0.216 4.216 23 S 0.151 5.849 24 C -0.189 4.189 25 N -0.315 5.315 26 C 0.090 3.910 27 H 0.260 0.740 28 H 0.055 0.945 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.207 0.793 37 H 0.174 0.826 38 H 0.127 0.873 39 H 0.186 0.814 40 H 0.192 0.808 41 H 0.061 0.939 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -24.407 -0.330 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.076 0.924 9 C 0.035 3.965 10 H 0.005 0.995 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.058 4.058 14 N -0.297 5.297 15 C 0.091 3.909 16 N -0.147 5.147 17 C -0.086 4.086 18 C -0.296 4.296 19 C -0.059 4.059 20 C -0.067 4.067 21 C -0.170 4.170 22 C -0.351 4.351 23 S 0.414 5.586 24 C -0.327 4.327 25 N -0.138 5.138 26 C -0.038 4.038 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.224 0.776 37 H 0.191 0.809 38 H 0.145 0.855 39 H 0.203 0.797 40 H 0.209 0.791 41 H 0.080 0.920 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.441 -24.611 1.258 24.647 hybrid contribution 1.183 2.330 -1.270 2.905 sum 0.742 -22.281 -0.011 22.293 Atomic orbital electron populations 1.70046 1.07351 1.27156 1.51160 1.25756 0.95615 1.02504 0.94776 0.85649 0.78349 0.78960 0.78910 1.19268 1.21245 1.19757 1.21479 0.93171 0.91816 1.50858 0.92421 1.18570 0.92968 0.91459 0.93537 0.99457 1.21455 0.99165 0.95761 0.97674 1.21545 0.97498 0.95257 1.00380 1.22015 0.95319 0.98654 0.89836 1.61681 1.25683 1.02379 1.39977 1.22138 0.88009 0.77668 1.03130 1.48746 1.42800 1.18833 1.04356 1.23085 0.98003 0.90490 0.97027 1.21722 1.11117 1.04715 0.92027 1.20672 0.98170 0.92988 0.94077 1.17021 1.02773 0.94796 0.92064 1.20212 1.02417 1.01536 0.92786 1.25769 1.06117 0.98331 1.04881 1.83988 1.56327 1.20403 0.97839 1.25962 1.04359 0.98325 1.04070 1.77556 1.18050 1.13123 1.05099 1.21914 0.95305 0.86895 0.99636 0.93116 0.92605 0.94850 0.94628 0.90994 0.93528 0.90769 0.88235 0.88197 0.77638 0.80855 0.85489 0.79671 0.79132 0.92005 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.89 11.36 21.45 0.24 -53.64 16 2 C 0.01 0.68 5.30 84.66 0.45 1.13 16 3 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.53 -29.24 8.56 25.60 0.22 -29.02 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 9 C 0.05 2.71 2.26 -11.49 -0.03 2.69 16 10 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 11 C -0.10 -4.86 5.03 30.67 0.15 -4.70 16 12 C -0.11 -4.25 6.09 30.65 0.19 -4.06 16 13 C 0.07 2.24 5.30 86.33 0.46 2.69 16 14 N -0.57 -20.20 4.79 -908.73 -4.36 -24.56 16 15 C 0.30 8.36 6.17 170.81 1.05 9.41 16 16 N -0.36 -10.39 3.47 -357.71 -1.24 -11.63 16 17 C 0.06 1.29 9.90 83.48 0.83 2.11 16 18 C -0.27 -5.96 10.33 22.18 0.23 -5.73 16 19 C 0.11 3.08 7.04 42.54 0.30 3.38 16 20 C -0.05 -1.31 5.79 -21.14 -0.12 -1.43 16 21 C -0.14 -3.47 9.92 21.38 0.21 -3.26 16 22 C -0.22 -4.03 11.19 66.66 0.75 -3.29 16 23 S 0.15 2.29 23.33 -56.49 -1.32 0.98 16 24 C -0.19 -3.44 10.73 66.97 0.72 -2.72 16 25 N -0.32 -10.63 12.49 -48.15 -0.60 -11.23 16 26 C 0.09 3.61 4.68 86.32 0.40 4.01 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.06 3.05 6.16 -2.39 -0.01 3.03 16 29 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 2.19 6.29 -2.39 -0.02 2.17 16 34 H 0.10 2.82 7.99 -2.39 -0.02 2.80 16 35 H 0.10 2.09 8.11 -2.39 -0.02 2.07 16 36 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.17 2.65 7.76 -2.91 -0.02 2.63 16 38 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 39 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 40 H 0.19 2.39 7.69 -2.91 -0.02 2.37 16 41 H 0.06 2.48 8.02 -2.39 -0.02 2.46 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -69.01 355.72 1.57 -67.44 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.01 Total: 15.89 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 5.81 Total: -28.79 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -5.96 Total: -101.07 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.98 kcal Total: -69.01 1.57 -67.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.304 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds