Wall clock time and date at job start Tue Mar 31 2020 11:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00418 * 2 1 4 4 H 1.48498 * 109.47538 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46744 * 299.99824 * 3 2 1 6 6 H 1.48501 * 109.47378 * 59.99358 * 3 2 1 7 7 C 1.37881 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99606 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49765 * 60.05924 * 9 7 2 11 11 C 1.53037 * 109.52364 * 180.14200 * 9 7 2 12 12 C 1.53043 * 109.53919 * 181.33412 * 11 9 7 13 13 C 1.53192 * 109.30860 * 298.63563 * 12 11 9 14 14 N 1.46926 * 108.77820 * 54.63429 * 13 12 11 15 15 C 1.34779 * 120.63044 * 126.36870 * 14 13 12 16 16 O 1.21277 * 119.99836 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99819 * 359.97438 * 15 14 13 18 18 O 1.42904 * 109.46768 * 179.97438 * 17 15 14 19 19 C 1.35909 * 116.99496 * 179.97438 * 18 17 15 20 20 C 1.38891 * 119.97372 * 359.72719 * 19 18 17 21 21 C 1.38298 * 120.29404 * 179.76060 * 20 19 18 22 22 C 1.37934 * 120.23175 * 0.51568 * 21 20 19 23 23 C 1.39834 * 119.94050 * 359.74522 * 22 21 20 24 24 C 1.47181 * 120.14767 * 180.02562 * 23 22 21 25 25 O 1.21250 * 120.00389 * 179.97438 * 24 23 22 26 26 C 1.38393 * 119.96797 * 180.02562 * 19 18 17 27 27 C 1.46925 * 118.73914 * 306.39111 * 14 13 12 28 28 H 0.97007 * 119.99876 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46383 * 301.35021 * 11 9 7 30 30 H 1.09002 * 109.46010 * 61.32699 * 11 9 7 31 31 H 1.09001 * 109.50069 * 178.68681 * 12 11 9 32 32 H 1.09000 * 109.49902 * 58.58363 * 12 11 9 33 33 H 1.09006 * 109.58809 * 294.84764 * 13 12 11 34 34 H 1.09002 * 109.58657 * 174.42750 * 13 12 11 35 35 H 1.08996 * 109.47482 * 299.99879 * 17 15 14 36 36 H 1.09003 * 109.47124 * 60.00250 * 17 15 14 37 37 H 1.07997 * 119.85686 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.88353 * 180.25608 * 21 20 19 39 39 H 1.08004 * 120.02890 * 179.75789 * 22 21 20 40 40 H 1.08000 * 119.99786 * 359.97435 * 24 23 22 41 41 H 1.08001 * 120.11171 * 0.02562 * 26 19 18 42 42 H 1.08998 * 109.58340 * 173.39503 * 27 14 13 43 43 H 1.09003 * 109.58494 * 293.68068 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6253 -2.5580 -0.8900 11 6 2.2443 -3.6633 0.0048 12 6 1.4798 -4.9887 -0.0288 13 6 0.6010 -5.0983 1.2212 14 7 -0.2572 -3.9085 1.3019 15 6 -1.5940 -4.0328 1.4200 16 8 -2.2916 -3.0429 1.4852 17 6 -2.2220 -5.4019 1.4699 18 8 -3.6394 -5.2714 1.5968 19 6 -4.3619 -6.4210 1.6556 20 6 -3.7179 -7.6496 1.5864 21 6 -4.4462 -8.8236 1.6505 22 6 -5.8195 -8.7831 1.7730 23 6 -6.4784 -7.5515 1.8381 24 6 -7.9435 -7.5030 1.9694 25 8 -8.5121 -6.4336 2.0261 26 6 -5.7393 -6.3662 1.7780 27 6 0.3696 -2.5806 1.2508 28 1 -0.4850 0.8401 -0.0004 29 1 2.8890 -3.5938 -0.8714 30 1 2.8529 -3.6181 0.9080 31 1 2.1881 -5.8169 -0.0493 32 1 0.8520 -5.0241 -0.9191 33 1 1.2324 -5.1542 2.1080 34 1 -0.0190 -5.9923 1.1547 35 1 -1.9872 -5.9429 0.5533 36 1 -1.8298 -5.9505 2.3262 37 1 -2.6434 -7.6885 1.4855 38 1 -3.9382 -9.7753 1.6002 39 1 -6.3853 -9.7019 1.8189 40 1 -8.5122 -8.4200 2.0153 41 1 -6.2415 -5.4113 1.8266 42 1 -0.4032 -1.8134 1.2038 43 1 0.9801 -2.4303 2.1412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:13 Heat of formation + Delta-G solvation = -79.393182 kcal Electronic energy + Delta-G solvation = -25823.797572 eV Core-core repulsion = 22027.602011 eV Total energy + Delta-G solvation = -3796.195561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62695 -39.63578 -38.91179 -37.34195 -36.52273 -33.49817 -31.90827 -31.58246 -30.83996 -29.96036 -28.23612 -25.31272 -25.09315 -24.21435 -22.68289 -21.92463 -21.27692 -19.86360 -18.61229 -18.33615 -16.88426 -16.65135 -16.45671 -16.32456 -16.06658 -15.45118 -15.22194 -14.70009 -14.60534 -14.49122 -14.18897 -14.02445 -13.80500 -13.41542 -13.17038 -12.74692 -12.67371 -12.53669 -12.20279 -12.12351 -11.95426 -11.35166 -11.21329 -11.05654 -10.96493 -10.55246 -10.46173 -10.29374 -10.14315 -9.96815 -9.36113 -9.35639 -9.18280 -8.93592 -8.50809 -8.47611 -7.86307 -6.02789 -4.12163 0.31104 1.12046 2.15249 2.67128 3.04542 3.28785 3.37294 3.39819 3.50256 3.73370 4.00731 4.40271 4.42499 4.62307 4.66106 4.72593 4.86561 4.92863 5.01448 5.13417 5.14722 5.27258 5.30835 5.37926 5.54069 5.60961 5.86163 5.91619 5.99798 6.02185 6.05552 6.22031 6.31678 6.51691 6.58270 6.76430 6.90043 7.02415 7.09858 7.15305 7.22119 7.58521 7.81081 7.93596 8.12429 8.33782 8.71832 8.92354 9.54060 11.02474 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.002691 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.049397 B =10403.622308 C =11542.041503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.106 3.894 14 N -0.603 5.603 15 C 0.506 3.494 16 O -0.511 6.511 17 C 0.041 3.959 18 O -0.284 6.284 19 C 0.124 3.876 20 C -0.181 4.181 21 C -0.093 4.093 22 C -0.113 4.113 23 C -0.156 4.156 24 C 0.383 3.617 25 O -0.454 6.454 26 C -0.091 4.091 27 C 0.113 3.887 28 H 0.264 0.736 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.674 -22.551 3.843 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.017 4.017 14 N -0.338 5.338 15 C 0.291 3.709 16 O -0.386 6.386 17 C -0.038 4.038 18 O -0.196 6.196 19 C 0.077 3.923 20 C -0.200 4.200 21 C -0.111 4.111 22 C -0.131 4.131 23 C -0.157 4.157 24 C 0.240 3.760 25 O -0.326 6.326 26 C -0.110 4.110 27 C -0.006 4.006 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.125 0.875 41 H 0.161 0.839 42 H 0.142 0.858 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.586 -21.069 3.923 22.734 hybrid contribution 0.946 0.473 -0.069 1.060 sum -6.639 -20.596 3.854 21.980 Atomic orbital electron populations 1.69887 1.05750 1.26878 1.49144 1.25070 0.94890 0.99352 0.94778 0.86528 0.79996 0.83750 0.77688 1.19788 1.20977 1.20939 1.21094 0.92943 0.90017 1.51994 0.92241 1.18981 0.92606 0.92422 0.93954 0.95255 1.21630 0.98577 0.93935 1.00736 1.21957 0.98657 0.99346 0.97310 1.21696 0.93685 0.87278 0.99054 1.48463 1.04446 1.09377 1.71482 1.19778 0.82942 0.89493 0.78695 1.90776 1.60859 1.38808 1.48165 1.22698 0.79785 0.98438 1.02838 1.86247 1.18392 1.27592 1.87355 1.19031 0.91563 0.85409 0.96248 1.21573 1.00958 0.92100 1.05329 1.20905 0.93860 0.97831 0.98516 1.21239 0.94641 0.96740 1.00498 1.20741 0.96592 0.93356 1.04996 1.24091 0.88090 0.93240 0.70547 1.90561 1.72907 1.34874 1.34237 1.20734 0.90717 0.99539 1.00038 1.22368 0.98716 0.80805 0.98726 0.92590 0.92864 0.93067 0.92029 0.92056 0.91556 0.91608 0.89312 0.89449 0.84899 0.85048 0.84923 0.87460 0.83903 0.85827 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 11.39 55.43 0.63 -24.98 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -13.90 8.57 -34.44 -0.29 -14.19 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.09 5.11 -26.69 -0.14 -2.23 16 12 C -0.13 -1.97 6.08 -26.61 -0.16 -2.13 16 13 C 0.11 1.48 6.34 -3.71 -0.02 1.45 16 14 N -0.60 -11.50 2.97 -172.76 -0.51 -12.02 16 15 C 0.51 9.99 7.78 -10.98 -0.09 9.90 16 16 O -0.51 -12.87 15.91 -14.35 -0.23 -13.10 16 17 C 0.04 0.58 3.56 36.01 0.13 0.70 16 18 O -0.28 -4.59 9.67 -39.36 -0.38 -4.97 16 19 C 0.12 1.59 6.68 -39.28 -0.26 1.33 16 20 C -0.18 -1.72 9.03 -39.32 -0.36 -2.08 16 21 C -0.09 -0.68 10.02 -39.67 -0.40 -1.08 16 22 C -0.11 -0.79 9.79 -39.10 -0.38 -1.17 16 23 C -0.16 -1.48 5.87 -105.08 -0.62 -2.09 16 24 C 0.38 3.23 11.46 34.36 0.39 3.62 16 25 O -0.45 -5.91 17.16 5.58 0.10 -5.81 16 26 C -0.09 -1.15 9.54 -38.94 -0.37 -1.53 16 27 C 0.11 2.68 5.40 -3.71 -0.02 2.66 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.67 5.93 -51.93 -0.31 0.36 16 35 H 0.09 1.01 7.19 -51.93 -0.37 0.64 16 36 H 0.09 0.94 7.47 -51.93 -0.39 0.55 16 37 H 0.13 1.00 6.28 -52.49 -0.33 0.67 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 40 H 0.11 0.40 8.06 -52.49 -0.42 -0.03 16 41 H 0.14 2.00 7.65 -52.49 -0.40 1.60 16 42 H 0.12 3.48 5.12 -51.93 -0.27 3.21 16 43 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -34.90 357.60 -8.75 -43.65 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.84 Total: 0.18 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.89 Total: -4.48 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.12 Total: -37.00 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.51 Total: -23.88 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.90 -8.75 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.743 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds